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Items: 1 to 50 of 74

1.

Medaka Population Genome Structure and Demographic History Described via Genotyping-by-Sequencing.

Katsumura T, Oda S, Mitani H, Oota H.

G3 (Bethesda). 2019 Jan 9;9(1):217-228. doi: 10.1534/g3.118.200779.

2.

A new targeted capture method using bacterial artificial chromosome (BAC) libraries as baits for sequencing relatively large genes.

Koganebuchi K, Gakuhari T, Takeshima H, Sato K, Fujii K, Kumabe T, Kasagi S, Sato T, Tajima A, Shibata H, Ogawa M, Oota H.

PLoS One. 2018 Jul 12;13(7):e0200170. doi: 10.1371/journal.pone.0200170. eCollection 2018.

3.

The prehistoric peopling of Southeast Asia.

McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, Moreno-Mayar JV, van Driem G, Gram Wilken U, Seguin-Orlando A, de la Fuente Castro C, Wasef S, Shoocongdej R, Souksavatdy V, Sayavongkhamdy T, Saidin MM, Allentoft ME, Sato T, Malaspinas AS, Aghakhanian FA, Korneliussen T, Prohaska A, Margaryan A, de Barros Damgaard P, Kaewsutthi S, Lertrit P, Nguyen TMH, Hung HC, Minh Tran T, Nghia Truong H, Nguyen GH, Shahidan S, Wiradnyana K, Matsumae H, Shigehara N, Yoneda M, Ishida H, Masuyama T, Yamada Y, Tajima A, Shibata H, Toyoda A, Hanihara T, Nakagome S, Deviese T, Bacon AM, Duringer P, Ponche JL, Shackelford L, Patole-Edoumba E, Nguyen AT, Bellina-Pryce B, Galipaud JC, Kinaston R, Buckley H, Pottier C, Rasmussen S, Higham T, Foley RA, Lahr MM, Orlando L, Sikora M, Phipps ME, Oota H, Higham C, Lambert DM, Willerslev E.

Science. 2018 Jul 6;361(6397):88-92. doi: 10.1126/science.aat3628.

PMID:
29976827
4.

Abnormal nuclear morphology is independent of longevity in a zmpste24-deficient fish model of Hutchinson-Gilford progeria syndrome (HGPS).

Tonoyama Y, Shinya M, Toyoda A, Kitano T, Oga A, Nishimaki T, Katsumura T, Oota H, Wan MT, Yip BWP, Helen MOL, Chisada S, Deguchi T, Au DWT, Naruse K, Kamei Y, Taniguchi Y.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jul;209:54-62. doi: 10.1016/j.cbpc.2018.03.006. Epub 2018 Mar 19.

5.

Experimental evidence reveals the UCP1 genotype changes the oxygen consumption attributed to non-shivering thermogenesis in humans.

Nishimura T, Katsumura T, Motoi M, Oota H, Watanuki S.

Sci Rep. 2017 Jul 17;7(1):5570. doi: 10.1038/s41598-017-05766-3.

6.

An ancestral haplotype of the human PERIOD2 gene associates with reduced sensitivity to light-induced melatonin suppression.

Akiyama T, Katsumura T, Nakagome S, Lee SI, Joh K, Soejima H, Fujimoto K, Kimura R, Ishida H, Hanihara T, Yasukouchi A, Satta Y, Higuchi S, Oota H.

PLoS One. 2017 Jun 26;12(6):e0178373. doi: 10.1371/journal.pone.0178373. eCollection 2017.

7.

Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.

Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H.

Hum Genet. 2017 Apr;136(4):387-397. doi: 10.1007/s00439-017-1764-0. Epub 2017 Feb 14.

PMID:
28197769
8.

An Approach to Elucidate NBS1 Function in DNA Repair Using Frequent Nonsynonymous Polymorphism in Wild Medaka (Oryzias latipes) Populations.

Igarashi K, Kobayashi J, Katsumura T, Urushihara Y, Hida K, Watanabe-Asaka T, Oota H, Oda S, Mitani H.

PLoS One. 2017 Jan 20;12(1):e0170006. doi: 10.1371/journal.pone.0170006. eCollection 2017.

9.

The allele frequency of ALDH2*Glu504Lys and ADH1B*Arg47His for the Ryukyu islanders and their history of expansion among East Asians.

Koganebuchi K, Haneji K, Toma T, Joh K, Soejima H, Fujimoto K, Ishida H, Ogawa M, Hanihara T, Harada S, Kawamura S, Oota H.

Am J Hum Biol. 2017 Mar;29(2). doi: 10.1002/ajhb.22933. Epub 2016 Nov 1.

PMID:
27801545
10.

A comparative study on the regulatory region of the PERIOD1 gene among diurnal/nocturnal primates.

Katsumura T, Fukuyo Y, Kawamura S, Oota H.

J Physiol Anthropol. 2016 Sep 28;35(1):21.

11.

In vivo 3D analysis of systemic effects after local heavy-ion beam irradiation in an animal model.

Nagata K, Hashimoto C, Watanabe-Asaka T, Itoh K, Yasuda T, Ohta K, Oonishi H, Igarashi K, Suzuki M, Funayama T, Kobayashi Y, Nishimaki T, Katsumura T, Oota H, Ogawa M, Oga A, Ikemoto K, Itoh H, Kutsuna N, Oda S, Mitani H.

Sci Rep. 2016 Jun 27;6:28691. doi: 10.1038/srep28691.

12.

Transgenic medaka that overexpress growth hormone have a skin color that does not indicate the activation or inhibition of somatolactin-α signal.

Komine R, Nishimaki T, Kimura T, Oota H, Naruse K, Homma N, Fukamachi S.

Gene. 2016 Jun 10;584(1):38-46. doi: 10.1016/j.gene.2016.02.046. Epub 2016 Mar 3.

PMID:
26945627
13.

Meiotic recombination counteracts male-biased mutation (male-driven evolution).

Mawaribuchi S, Ito M, Ogata M, Oota H, Katsumura T, Takamatsu N, Miura I.

Proc Biol Sci. 2016 Jan 27;283(1823). pii: 20152691. doi: 10.1098/rspb.2015.2691.

14.

Biochemical Characterization of Medaka (Oryzias latipes) Transglutaminases, OlTGK1 and OlTGK2, as Orthologues of Human Keratinocyte-Type Transglutaminase.

Kikuta A, Furukawa E, Ogawa R, Suganuma N, Saitoh M, Nishimaki T, Katsumura T, Oota H, Kawamoto T, Tatsukawa H, Hashimoto H, Hitomi K.

PLoS One. 2015 Dec 29;10(12):e0144194. doi: 10.1371/journal.pone.0144194. eCollection 2015.

15.

A case of MUC5AC-positive intraductal neoplasm of the pancreas classified as an intraductal tubulopapillary neoplasm?

Muraki T, Uehara T, Sano K, Oota H, Yoshizawa A, Asaka S, Tateishi A, Otsuki T, Shingu K, Matoba H, Kobayashi S, Ichimata S, Watanabe T, Itou T, Tanaka E.

Pathol Res Pract. 2015 Dec;211(12):1034-9. doi: 10.1016/j.prp.2015.10.009. Epub 2015 Oct 30.

PMID:
26586167
16.

Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data.

Nakagome S, Sato T, Ishida H, Hanihara T, Yamaguchi T, Kimura R, Mano S, Oota H; Asian DNA Repository Consortium.

Mol Biol Evol. 2015 Jun;32(6):1533-43. doi: 10.1093/molbev/msv045. Epub 2015 Mar 10.

PMID:
25758010
17.

Natural allelic variations of xenobiotic-metabolizing enzymes affect sexual dimorphism in Oryzias latipes.

Katsumura T, Oda S, Nakagome S, Hanihara T, Kataoka H, Mitani H, Kawamura S, Oota H.

Proc Biol Sci. 2014 Dec 22;281(1797). pii: 20142259. doi: 10.1098/rspb.2014.2259.

18.

Genome-wide SNP analysis reveals population structure and demographic history of the ryukyu islanders in the southern part of the Japanese archipelago.

Sato T, Nakagome S, Watanabe C, Yamaguchi K, Kawaguchi A, Koganebuchi K, Haneji K, Yamaguchi T, Hanihara T, Yamamoto K, Ishida H, Mano S, Kimura R, Oota H.

Mol Biol Evol. 2014 Nov;31(11):2929-40. doi: 10.1093/molbev/msu230. Epub 2014 Aug 1.

PMID:
25086001
19.

Human genetic research, race, ethnicity and the labeling of populations: recommendations based on an interdisciplinary workshop in Japan.

Takezawa Y, Kato K, Oota H, Caulfield T, Fujimoto A, Honda S, Kamatani N, Kawamura S, Kawashima K, Kimura R, Matsumae H, Saito A, Savage PE, Seguchi N, Shimizu K, Terao S, Yamaguchi-Kabata Y, Yasukouchi A, Yoneda M, Tokunaga K.

BMC Med Ethics. 2014 Apr 23;15:33. doi: 10.1186/1472-6939-15-33.

20.

Color Vision Variation as Evidenced by Hybrid L/M Opsin Genes in Wild Populations of Trichromatic Alouatta New World Monkeys.

Matsushita Y, Oota H, Welker BJ, Pavelka MS, Kawamura S.

Int J Primatol. 2014;35:71-87. Epub 2013 Aug 23.

21.

Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers.

Said HS, Suda W, Nakagome S, Chinen H, Oshima K, Kim S, Kimura R, Iraha A, Ishida H, Fujita J, Mano S, Morita H, Dohi T, Oota H, Hattori M.

DNA Res. 2014 Feb;21(1):15-25. doi: 10.1093/dnares/dst037. Epub 2013 Sep 7.

22.

[Antibacterial susceptibility surveillance of Haemophilus influenzae isolated from pediatric patients in Gifu and Aichi prefectures (2009-2010)].

Takakura M, Fukuda Y, Nomura N, Mitsuyama J, Yamaoka K, Asano Y, Sawamura H, Katsuragawa K, Hashido H, Matsukawa Y, Matsubara S, Oota H, Watanabe K, Yamagishi Y, Mikamo H; Working Group of Tokai Anti-biogram Study Group.

Jpn J Antibiot. 2012 Oct;65(5):305-21. Japanese.

PMID:
23383433
23.

The history of human populations in the Japanese Archipelago inferred from genome-wide SNP data with a special reference to the Ainu and the Ryukyuan populations.

Japanese Archipelago Human Population Genetics Consortium, Jinam T, Nishida N, Hirai M, Kawamura S, Oota H, Umetsu K, Kimura R, Ohashi J, Tajima A, Yamamoto T, Tanabe H, Mano S, Suto Y, Kaname T, Naritomi K, Yanagi K, Niikawa N, Omoto K, Tokunaga K, Saitou N.

J Hum Genet. 2012 Dec;57(12):787-95. doi: 10.1038/jhg.2012.114. Epub 2012 Nov 8.

PMID:
23135232
24.

Generation of monoclonal antibodies against the Galβ1-4Gal epitope: a key tool in studies of species-specific glycans expressed in fish, amphibians and birds.

Suzuki N, Nawa D, Tateno H, Yasuda T, Oda S, Mitani H, Nishimaki T, Katsumura T, Oota H, Hanihara T, Oga A, Hirabayashi J, Yamamoto K.

Glycobiology. 2013 Jan;23(1):91-105. doi: 10.1093/glycob/cws129. Epub 2012 Sep 3.

PMID:
22948803
25.

Effects of an Asian-specific nonsynonymous EDAR variant on multiple dental traits.

Park JH, Yamaguchi T, Watanabe C, Kawaguchi A, Haneji K, Takeda M, Kim YI, Tomoyasu Y, Watanabe M, Oota H, Hanihara T, Ishida H, Maki K, Park SB, Kimura R.

J Hum Genet. 2012 Aug;57(8):508-14. doi: 10.1038/jhg.2012.60. Epub 2012 May 31.

PMID:
22648185
26.

Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.

Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H.

Mol Biol Evol. 2012 Jun;29(6):1569-85. doi: 10.1093/molbev/mss006. Epub 2012 Jan 12.

27.

Gene conversion and purifying selection shape nucleotide variation in gibbon L/M opsin genes.

Hiwatashi T, Mikami A, Katsumura T, Suryobroto B, Perwitasari-Farajallah D, Malaivijitnond S, Siriaroonrat B, Oota H, Goto S, Kawamura S.

BMC Evol Biol. 2011 Oct 22;11:312. doi: 10.1186/1471-2148-11-312.

28.

Population-specific susceptibility to Crohn's disease and ulcerative colitis; dominant and recessive relative risks in the Japanese population.

Nakagome S, Takeyama Y, Mano S, Sakisaka S, Matsui T, Kawamura S, Oota H.

Ann Hum Genet. 2010 Mar;74(2):126-36. doi: 10.1111/j.1469-1809.2010.00567.x.

29.

A genetic analysis of the Sakishima islanders reveals no relationship with Taiwan aborigines but shared ancestry with Ainu and main-island Japanese.

Matsukusa H, Oota H, Haneji K, Toma T, Kawamura S, Ishida H.

Am J Phys Anthropol. 2010 Jun;142(2):211-23. doi: 10.1002/ajpa.21212.

PMID:
20091849
30.

An explicit signature of balancing selection for color-vision variation in new world monkeys.

Hiwatashi T, Okabe Y, Tsutsui T, Hiramatsu C, Melin AD, Oota H, Schaffner CM, Aureli F, Fedigan LM, Innan H, Kawamura S.

Mol Biol Evol. 2010 Feb;27(2):453-64. doi: 10.1093/molbev/msp262. Epub 2009 Oct 27.

PMID:
19861643
31.

A common variation in EDAR is a genetic determinant of shovel-shaped incisors.

Kimura R, Yamaguchi T, Takeda M, Kondo O, Toma T, Haneji K, Hanihara T, Matsukusa H, Kawamura S, Maki K, Osawa M, Ishida H, Oota H.

Am J Hum Genet. 2009 Oct;85(4):528-35. doi: 10.1016/j.ajhg.2009.09.006.

32.

Medaka: a promising model animal for comparative population genomics.

Matsumoto Y, Oota H, Asaoka Y, Nishina H, Watanabe K, Bujnicki JM, Oda S, Kawamura S, Mitani H.

BMC Res Notes. 2009 May 10;2:88. doi: 10.1186/1756-0500-2-88.

33.

Genetic differentiation among local populations of medaka fish (Oryzias latipes) evaluated through grid- and deme-based sampling.

Katsumura T, Oda S, Mano S, Suguro N, Watanabe K, Mitani H, Oota H, Kawamura S.

Gene. 2009 Aug 15;443(1-2):170-7. doi: 10.1016/j.gene.2009.04.017. Epub 2009 May 3.

PMID:
19397956
34.

Origin and dispersal of atypical aldehyde dehydrogenase ALDH2487Lys.

Luo HR, Wu GS, Pakstis AJ, Tong L, Oota H, Kidd KK, Zhang YP.

Gene. 2009 Apr 15;435(1-2):96-103. doi: 10.1016/j.gene.2008.12.021. Epub 2009 Jan 29.

PMID:
19393179
35.

[A case of splenic inflammatory pseudotumor].

Ishikawa T, Ushiki T, Togashi T, Watanabe K, Seki K, Oota H, Yoshida T, Kamimura T, Musha N, Tsubono T, Sakai Y, Takeda K, Ishihara N.

Nihon Shokakibyo Gakkai Zasshi. 2007 Mar;104(3):407-12. Japanese.

PMID:
17337879
36.

Evidence of positive selection on a class I ADH locus.

Han Y, Gu S, Oota H, Osier MV, Pakstis AJ, Speed WC, Kidd JR, Kidd KK.

Am J Hum Genet. 2007 Mar;80(3):441-56. Epub 2007 Jan 30.

37.

Conservative evolution in duplicated genes of the primate Class I ADH cluster.

Oota H, Dunn CW, Speed WC, Pakstis AJ, Palmatier MA, Kidd JR, Kidd KK.

Gene. 2007 May 1;392(1-2):64-76. Epub 2006 Nov 23.

PMID:
17204375
38.

Considerable haplotype diversity within the 23kb encompassing the ADH7 gene.

Han Y, Oota H, Osier MV, Pakstis AJ, Speed WC, Odunsi A, Okonofua F, Kajuna SL, Karoma NJ, Kungulilo S, Grigorenko E, Zhukova OV, Bonne-Tamir B, Lu RB, Parnas J, Schulz LO, Kidd JR, Kidd KK.

Alcohol Clin Exp Res. 2005 Dec;29(12):2091-100.

PMID:
16385178
39.

Recent origin and cultural reversion of a hunter-gatherer group.

Oota H, Pakendorf B, Weiss G, von Haeseler A, Pookajorn S, Settheetham-Ishida W, Tiwawech D, Ishida T, Stoneking M.

PLoS Biol. 2005 Mar;3(3):e71. Epub 2005 Feb 22.

40.
41.

The evolution and population genetics of the ALDH2 locus: random genetic drift, selection, and low levels of recombination.

Oota H, Pakstis AJ, Bonne-Tamir B, Goldman D, Grigorenko E, Kajuna SL, Karoma NJ, Kungulilo S, Lu RB, Odunsi K, Okonofua F, Zhukova OV, Kidd JR, Kidd KK.

Ann Hum Genet. 2004 Mar;68(Pt 2):93-109.

PMID:
15008789
42.

[A case of advanced gastric cancer with liver and intra-abdominal lymph node metastasis treated by hypertensive selective chemotherapy with pharmacokinetic modulating chemotherapy].

Ishikawa T, Nomura K, Baba Y, Hayashi S, Oota H, Yoshida T, Kamimura T.

Gan To Kagaku Ryoho. 2003 Aug;30(8):1151-5. Japanese.

PMID:
12938272
43.

Complex vertebral malformation in a stillborn Holstein calf in Japan.

Nagahata H, Oota H, Nitanai A, Oikawa S, Higuchi H, Nakade T, Kurosawa T, Morita M, Ogawa H.

J Vet Med Sci. 2002 Dec;64(12):1107-12.

44.

Extreme mtDNA homogeneity in continental Asian populations.

Oota H, Kitano T, Jin F, Yuasa I, Wang L, Ueda S, Saitou N, Stoneking M.

Am J Phys Anthropol. 2002 Jun;118(2):146-53.

PMID:
12012367
45.

A case of muscular hamartoma of the breast.

Takeuchi M, Kashiki Y, Shibuya C, Yamamoto S, Kitamura F, Nagao Y, Oota H, Yoshimi N.

Breast Cancer. 2001;8(3):243-5.

PMID:
11668248
46.

Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence.

Oota H, Settheetham-Ishida W, Tiwawech D, Ishida T, Stoneking M.

Nat Genet. 2001 Sep;29(1):20-1.

PMID:
11528385
47.

Genetic study of the Paleolithic and Neolithic Southeast Asians.

Oota H, Kurosaki K, Pookajorn S, Ishida T, Ueda S.

Hum Biol. 2001 Apr;73(2):225-31.

PMID:
11446426
48.

Genetic structure of a 2,500-year-old human population in China and its spatiotemporal changes.

Wang L, Oota H, Saitou N, Jin F, Matsushita T, Ueda S.

Mol Biol Evol. 2000 Sep;17(9):1396-400.

PMID:
10958855
49.

Chronic graft-versus-host disease in children and adolescents after bone marrow transplantation from HLA-matched donors.

Yumura-Yagi K, Inoue M, Sakata N, Okamura T, Yasui M, Nakano T, Nomura K, Nakano T, Park DY, Endo C, Nishiuchi R, Sawada A, Matsuda Y, Oota H, Yoshimoto T, Kawa-Ha K.

Int J Hematol. 2000 Apr;71(3):278-82.

PMID:
10846836
50.

[A case of branch duct type mucin producing pancreatic cancer in which endoscopic ultrasonography was useful in determining operative procedure].

Okaniwa S, Oota H, Oyama T, Takamatsu M, Hisa T, Tomori A, Yamada S, Ookubo H.

Nihon Shokakibyo Gakkai Zasshi. 1999 Jan;96(1):59-63. Japanese. No abstract available.

PMID:
10047695

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