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Items: 20

1.

Improved reference genome of Aedes aegypti informs arbovirus vector control.

Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, Campbell CL, Chan S, Cox E, Evans BR, Fansiri T, Filipović I, Fontaine A, Gloria-Soria A, Hall R, Joardar VS, Jones AK, Kay RGG, Kodali VK, Lee J, Lycett GJ, Mitchell SN, Muehling J, Murphy MR, Omer AD, Partridge FA, Peluso P, Aiden AP, Ramasamy V, Rašić G, Roy S, Saavedra-Rodriguez K, Sharan S, Sharma A, Smith ML, Turner J, Weakley AM, Zhao Z, Akbari OS, Black WC 4th, Cao H, Darby AC, Hill CA, Johnston JS, Murphy TD, Raikhel AS, Sattelle DB, Sharakhov IV, White BJ, Zhao L, Aiden EL, Mann RS, Lambrechts L, Powell JR, Sharakhova MV, Tu Z, Robertson HM, McBride CS, Hastie AR, Korlach J, Neafsey DE, Phillippy AM, Vosshall LB.

Nature. 2018 Nov;563(7732):501-507. doi: 10.1038/s41586-018-0692-z. Epub 2018 Nov 14.

PMID:
30429615
2.

Cohesin Loss Eliminates All Loop Domains.

Rao SSP, Huang SC, Glenn St Hilaire B, Engreitz JM, Perez EM, Kieffer-Kwon KR, Sanborn AL, Johnstone SE, Bascom GD, Bochkov ID, Huang X, Shamim MS, Shin J, Turner D, Ye Z, Omer AD, Robinson JT, Schlick T, Bernstein BE, Casellas R, Lander ES, Aiden EL.

Cell. 2017 Oct 5;171(2):305-320.e24. doi: 10.1016/j.cell.2017.09.026.

3.

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.

Dudchenko O, Batra SS, Omer AD, Nyquist SK, Hoeger M, Durand NC, Shamim MS, Machol I, Lander ES, Aiden AP, Aiden EL.

Science. 2017 Apr 7;356(6333):92-95. doi: 10.1126/science.aal3327. Epub 2017 Mar 23.

4.

Elucidating the mechanism of fluorinated extender unit loading for improved production of fluorine-containing polyketides.

Ad O, Thuronyi BW, Chang MC.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E660-E668. doi: 10.1073/pnas.1614196114. Epub 2017 Jan 17.

5.

Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3', 3'-cGAMP).

Hallberg ZF, Wang XC, Wright TA, Nan B, Ad O, Yeo J, Hammond MC.

Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):1790-5. doi: 10.1073/pnas.1515287113. Epub 2016 Feb 2.

6.

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL.

Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8.

7.

Regiospecific formation of cobamide isomers is directed by CobT.

Crofts TS, Hazra AB, Tran JL, Sokolovskaya OM, Osadchiy V, Ad O, Pelton J, Bauer S, Taga ME.

Biochemistry. 2014 Dec 16;53(49):7805-15. doi: 10.1021/bi501147d. Epub 2014 Dec 5.

PMID:
25412146
8.

Oxidative quenching of quinone methide adducts reveals transient products of reversible alkylation in duplex DNA.

McCrane MP, Hutchinson MA, Ad O, Rokita SE.

Chem Res Toxicol. 2014 Jul 21;27(7):1282-93. doi: 10.1021/tx500152d. Epub 2014 Jun 16.

PMID:
24896651
9.

Unusual acetylation-dependent reaction cascade in the biosynthesis of the pyrroloindole drug physostigmine.

Liu J, Ng T, Rui Z, Ad O, Zhang W.

Angew Chem Int Ed Engl. 2014 Jan 3;53(1):136-9. doi: 10.1002/anie.201308069. Epub 2013 Nov 13.

PMID:
24227628
10.

The chicken or the egg: microRNA-mediated regulation of mRNA translation or mRNA stability.

Omer AD, Janas MM, Novina CD.

Mol Cell. 2009 Sep 24;35(6):739-40. doi: 10.1016/j.molcel.2009.09.003.

11.

Probing the structure and function of an archaeal C/D-box methylation guide sRNA.

Omer AD, Zago M, Chang A, Dennis PP.

RNA. 2006 Sep;12(9):1708-20. Epub 2006 Jul 21.

12.

The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus.

Zago MA, Dennis PP, Omer AD.

Mol Microbiol. 2005 Mar;55(6):1812-28.

13.

RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea.

Ziesche SM, Omer AD, Dennis PP.

Mol Microbiol. 2004 Nov;54(4):980-93.

14.

RNA-modifying machines in archaea.

Omer AD, Ziesche S, Decatur WA, Fournier MJ, Dennis PP.

Mol Microbiol. 2003 May;48(3):617-29. Review.

15.

In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex.

Omer AD, Ziesche S, Ebhardt H, Dennis PP.

Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5289-94.

16.
17.

Biology and management of grape phylloxera.

Granett J, Walker MA, Kocsis L, Omer AD.

Annu Rev Entomol. 2001;46:387-412. Review.

PMID:
11112174
18.

Genome sequence of Halobacterium species NRC-1.

Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung KW, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12176-81.

19.

Jasmonic acid induced resistance in grapevines to a root and leaf feeder.

Omer AD, Thaler JS, Granett J, Karban R.

J Econ Entomol. 2000 Jun;93(3):840-5.

PMID:
10902339
20.

Homologs of small nucleolar RNAs in Archaea.

Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP.

Science. 2000 Apr 21;288(5465):517-22.

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