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Improved reference genome of Aedes aegypti informs arbovirus vector control.

Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, Campbell CL, Chan S, Cox E, Evans BR, Fansiri T, Filipović I, Fontaine A, Gloria-Soria A, Hall R, Joardar VS, Jones AK, Kay RGG, Kodali VK, Lee J, Lycett GJ, Mitchell SN, Muehling J, Murphy MR, Omer AD, Partridge FA, Peluso P, Aiden AP, Ramasamy V, Rašić G, Roy S, Saavedra-Rodriguez K, Sharan S, Sharma A, Smith ML, Turner J, Weakley AM, Zhao Z, Akbari OS, Black WC 4th, Cao H, Darby AC, Hill CA, Johnston JS, Murphy TD, Raikhel AS, Sattelle DB, Sharakhov IV, White BJ, Zhao L, Aiden EL, Mann RS, Lambrechts L, Powell JR, Sharakhova MV, Tu Z, Robertson HM, McBride CS, Hastie AR, Korlach J, Neafsey DE, Phillippy AM, Vosshall LB.

Nature. 2018 Nov 14. doi: 10.1038/s41586-018-0692-z. [Epub ahead of print]


Efficient adsorption of diclofenac sodium from aqueous solutions using magnetic amine-functionalized chitosan.

Liang XX, Omer AM, Hu ZH, Wang YG, Yu D, Ouyang XK.

Chemosphere. 2018 Nov 5;217:270-278. doi: 10.1016/j.chemosphere.2018.11.023. [Epub ahead of print]


Detection of common biogenic amines in fermented sausage produced in Turkey.

Ekici K, Omer AK.

Data Brief. 2018 Aug 29;20:1360-1362. doi: 10.1016/j.dib.2018.08.089. eCollection 2018 Oct.


Fabrication of tetraethylenepentamine functionalized alginate beads for adsorptive removal of Cr (VI) from aqueous solutions.

Omer AM, Khalifa RE, Hu Z, Zhang H, Liu C, Ouyang XK.

Int J Biol Macromol. 2018 Sep 17. pii: S0141-8130(18)32354-7. doi: 10.1016/j.ijbiomac.2018.09.097. [Epub ahead of print]


Mediastinal extension of a pancreatic pseudocyst.

Omer A, Engelman E, McClain J.

Radiol Case Rep. 2018 Sep 14;13(6):1192-1194. doi: 10.1016/j.radcr.2018.08.016. eCollection 2018 Dec.


Preparation, physicochemical characterization and antimicrobial activities of novel two phenolic chitosan Schiff base derivatives.

Hassan MA, Omer AM, Abbas E, Baset WMA, Tamer TM.

Sci Rep. 2018 Jul 30;8(1):11416. doi: 10.1038/s41598-018-29650-w.


Human induced pluripotent stem cell-derived glial cells and neural progenitors display divergent responses to Zika and dengue infections.

Muffat J, Li Y, Omer A, Durbin A, Bosch I, Bakiasi G, Richards E, Meyer A, Gehrke L, Jaenisch R.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7117-7122. doi: 10.1073/pnas.1719266115. Epub 2018 Jun 18.


Chitosan/hyaluronan/edaravone membranes for anti-inflammatory wound dressing: In vitro and in vivo evaluation studies.

Tamer TM, Valachová K, Hassan MA, Omer AM, El-Shafeey M, Mohy Eldin MS, Šoltés L.

Mater Sci Eng C Mater Biol Appl. 2018 Sep 1;90:227-235. doi: 10.1016/j.msec.2018.04.053. Epub 2018 Apr 19.


The AMPK agonist 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), but not metformin, prevents inflammation-associated cachectic muscle wasting.

Hall DT, Griss T, Ma JF, Sanchez BJ, Sadek J, Tremblay AMK, Mubaid S, Omer A, Ford RJ, Bedard N, Pause A, Wing SS, Di Marco S, Steinberg GR, Jones RG, Gallouzi IE.

EMBO Mol Med. 2018 Jul;10(7). pii: e8307. doi: 10.15252/emmm.201708307.


MitoQ Loaded Chitosan-Hyaluronan Composite Membranes for Wound Healing.

Tamer TM, Collins MN, Valachová K, Hassan MA, Omer AM, Mohy-Eldin MS, Švík K, Jurčík R, Ondruška Ľ, Biró C, Albadarin AB, Šoltés L.

Materials (Basel). 2018 Apr 7;11(4). pii: E569. doi: 10.3390/ma11040569.


Stress granules counteract senescence by sequestration of PAI-1.

Omer A, Patel D, Lian XJ, Sadek J, Di Marco S, Pause A, Gorospe M, Gallouzi IE.

EMBO Rep. 2018 May;19(5). pii: e44722. doi: 10.15252/embr.201744722. Epub 2018 Mar 28.


Influence of interferon-gamma Receptor 1 gene polymorphisms on the susceptibility to pulmonary tuberculosis among sudanese population.

Ali AH, Omer AA, Saeed NS, Mansour EE, Elhassan MM.

Int J Mycobacteriol. 2018 Jan-Mar;7(1):26-31. doi: 10.4103/ijmy.ijmy_206_17.


Carbohydrate Maldigestion and Malabsorption.

Omer A, Quigley EMM.

Clin Gastroenterol Hepatol. 2018 Aug;16(8):1197-1199. doi: 10.1016/j.cgh.2018.01.048. Epub 2018 Feb 6. No abstract available.


High Catalytic Efficiency of Nanostructured β-CoMoO₄ in the Reduction of the Ortho-, Meta- and Para-Nitrophenol Isomers.

Al-Wadaani F, Omer A, Abboudi M, Oudghiri Hassani H, Rakass S, Messali M, Benaissa M.

Molecules. 2018 Feb 9;23(2). pii: E364. doi: 10.3390/molecules23020364.


The Missing Link: A Case of Absent Pituitary Infundibulum and Ectopic Neurohypophysis in a Pediatric Patient with Heterotaxy Syndrome.

Omer A, Haddad D, Pisinski L, Krauthamer AV.

J Radiol Case Rep. 2017 Sep 30;11(9):28-34. doi: 10.3941/jrcr.v11i9.3046. eCollection 2017 Sep.


Attitudes of patients with psychiatric illness toward traditional healing.

Omer AA, Mufaddel AA.

Int J Soc Psychiatry. 2018 Mar;64(2):107-111. doi: 10.1177/0020764017748987. Epub 2017 Dec 19.


Fabrication of carboxylated cellulose nanocrystal/sodium alginate hydrogel beads for adsorption of Pb(II) from aqueous solution.

Hu ZH, Omer AM, Ouyang XK, Yu D.

Int J Biol Macromol. 2018 Mar;108:149-157. doi: 10.1016/j.ijbiomac.2017.11.171. Epub 2017 Dec 1.


An update on prucalopride in the treatment of chronic constipation.

Omer A, Quigley EMM.

Therap Adv Gastroenterol. 2017 Nov;10(11):877-887. doi: 10.1177/1756283X17734809. Epub 2017 Oct 16. Review.


Cohesin Loss Eliminates All Loop Domains.

Rao SSP, Huang SC, Glenn St Hilaire B, Engreitz JM, Perez EM, Kieffer-Kwon KR, Sanborn AL, Johnstone SE, Bascom GD, Bochkov ID, Huang X, Shamim MS, Shin J, Turner D, Ye Z, Omer AD, Robinson JT, Schlick T, Bernstein BE, Casellas R, Lander ES, Aiden EL.

Cell. 2017 Oct 5;171(2):305-320.e24. doi: 10.1016/j.cell.2017.09.026.


Fabrication of novel surface-imprinted magnetic graphene oxide-grafted cellulose nanocrystals for selective extraction and fast adsorption of fluoroquinolones from water.

Wang N, Wang YF, Omer AM, Ouyang XK.

Anal Bioanal Chem. 2017 Nov;409(28):6643-6653. doi: 10.1007/s00216-017-0619-9. Epub 2017 Sep 22.


Fabrication of ofloxacin imprinted polymer on the surface of magnetic carboxylated cellulose nanocrystals for highly selective adsorption of fluoroquinolones from water.

Hu ZH, Wang YF, Omer AM, Ouyang XK.

Int J Biol Macromol. 2018 Feb;107(Pt A):453-462. doi: 10.1016/j.ijbiomac.2017.09.009. Epub 2017 Sep 8.


Adsorptive removal of cationic methylene blue dye using carboxymethyl cellulose/k-carrageenan/activated montmorillonite composite beads: Isotherm and kinetic studies.

Liu C, Omer AM, Ouyang XK.

Int J Biol Macromol. 2018 Jan;106:823-833. doi: 10.1016/j.ijbiomac.2017.08.084. Epub 2017 Aug 20.


Molecular cloning and characterization of protein disulfide isomerase of Brugia malayi, a human lymphatic filarial parasite.

Verma P, Doharey PK, Yadav S, Omer A, Singh P, Saxena JK.

EXCLI J. 2017 Jun 1;16:824-839. doi: 10.17179/excli2017-214. eCollection 2017.


Antibacterial and antioxidative activity of O-amine functionalized chitosan.

Tamer TM, Hassan MA, Omer AM, Valachová K, Eldin MSM, Collins MN, Šoltés L.

Carbohydr Polym. 2017 Aug 1;169:441-450. doi: 10.1016/j.carbpol.2017.04.027. Epub 2017 Apr 21.


Adsorption of Pb(II) from fish sauce using carboxylated cellulose nanocrystal: Isotherm, kinetics, and thermodynamic studies.

Wang N, Jin RN, Omer AM, Ouyang XK.

Int J Biol Macromol. 2017 Sep;102:232-240. doi: 10.1016/j.ijbiomac.2017.03.150. Epub 2017 Apr 7.


De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.

Dudchenko O, Batra SS, Omer AD, Nyquist SK, Hoeger M, Durand NC, Shamim MS, Machol I, Lander ES, Aiden AP, Aiden EL.

Science. 2017 Apr 7;356(6333):92-95. doi: 10.1126/science.aal3327. Epub 2017 Mar 23.


Utility of cytokine, adhesion molecule and acute phase proteins in early diagnosis of neonatal sepsis.

Fattah MA, Omer AF, Asaif S, Manlulu R, Karar T, Ahmed A, Aljada A, Saleh AM, Qureshi S, Nasr A.

J Nat Sci Biol Med. 2017 Jan-Jun;8(1):32-39. doi: 10.4103/0976-9668.198362.


Cheminformatics studies to analyze the therapeutic potential of phytochemicals from Rhazya stricta.

Obaid AY, Voleti S, Bora RS, Hajrah NH, Omer AMS, Sabir JSM, Saini KS.

Chem Cent J. 2017 Jan 30;11:11. doi: 10.1186/s13065-017-0240-1. eCollection 2017.


Z-score growth reference data for Saudi preschool children.

El Mouzan MI, Shaffi A, Salloum AA, Alqurashi MM, Herbish AA, Omer AA.

Ann Saudi Med. 2017 Jan-Feb;37(1):10-15. doi: 10.5144/0256-4947.2017.10.


Induction of Expansion and Folding in Human Cerebral Organoids.

Li Y, Muffat J, Omer A, Bosch I, Lancaster MA, Sur M, Gehrke L, Knoblich JA, Jaenisch R.

Cell Stem Cell. 2017 Mar 2;20(3):385-396.e3. doi: 10.1016/j.stem.2016.11.017. Epub 2016 Dec 29.


Regulatory Considerations for the Approval of Drugs Against Histomoniasis (Blackhead Disease) in Turkeys, Chickens, and Game Birds in the United States.

Regmi PR, Shaw AL, Hungerford LL, Messenheimer JR, Zhou T, Pillai P, Omer A, Gilbert JM.

Avian Dis. 2016 Dec;60(4):725-730. Review.


Insulin Autoimmune Syndrome: a rare cause of postprandial hypoglycemia.

Sahni P, Trivedi N, Omer A.

Endocrinol Diabetes Metab Case Rep. 2016;2016. pii: 16-0064. Epub 2016 Oct 11.


Adrenal incidentalomas: are they being worked up appropriately?

Sahni P, Trivedi A, Omer A, Trivedi N.

J Community Hosp Intern Med Perspect. 2016 Oct 26;6(5):32913. doi: 10.3402/jchimp.v6.32913. eCollection 2016.


Efficient derivation of microglia-like cells from human pluripotent stem cells.

Muffat J, Li Y, Yuan B, Mitalipova M, Omer A, Corcoran S, Bakiasi G, Tsai LH, Aubourg P, Ransohoff RM, Jaenisch R.

Nat Med. 2016 Nov;22(11):1358-1367. doi: 10.1038/nm.4189. Epub 2016 Sep 26.


Removal of methylparaben from synthetic aqueous solutions using polyacrylonitrile beads: kinetic and equilibrium studies.

Forte M, Mita L, Perrone R, Rossi S, Argirò M, Mita DG, Guida M, Portaccio M, Godievargova T, Ivanov Y, Tamer MT, Omer AM, Mohy Eldin MS.

Environ Sci Pollut Res Int. 2017 Jan;24(2):1270-1282. doi: 10.1007/s11356-016-7846-z. Epub 2016 Oct 22.


Growth reference for Saudi school-age children and adolescents: LMS parameters and percentiles.

El Mouzan M, Salloum AA, Omer AA, Alqurashi M, Herbish AA.

Ann Saudi Med. 2016 Jul-Aug;36(4):265-8. doi: 10.5144/0256-4947.2016.265.


Development of amphoteric alginate/aminated chitosan coated microbeads for oral protein delivery.

Omer AM, Tamer TM, Hassan MA, Rychter P, Mohy Eldin MS, Koseva N.

Int J Biol Macromol. 2016 Nov;92:362-370. doi: 10.1016/j.ijbiomac.2016.07.019. Epub 2016 Jul 5.


Teratodermoid mimicking cholecystitis.

Iftikhar H, Idu S, Omer A.

Clin Case Rep. 2016 Apr 6;4(5):494-8. doi: 10.1002/ccr3.554. eCollection 2016 May.


Late Acute Graft-versus-Host Disease after Allogeneic Hematopoietic Stem Cell Transplantation.

Omer AK, Weisdorf DJ, Lazaryan A, Shanley R, Blazar BR, MacMillan ML, Brunstein C, Bejanyan N, Arora M.

Biol Blood Marrow Transplant. 2016 May;22(5):879-83. doi: 10.1016/j.bbmt.2015.12.020. Epub 2015 Dec 29.


Leptomeningeal carcinomatosis from oesophageal cancer, presenting as meningitis.

Ahmed M, Begum T, Omer AR, Khan IA.

BMJ Case Rep. 2016 Jan 6;2016. pii: bcr2015210974. doi: 10.1136/bcr-2015-210974.


Explicit Drug Re-positioning: Predicting Novel Drug-Target Interactions of the Shelved Molecules with QM/MM Based Approaches.

Omer A, Suryanarayanan V, Selvaraj C, Singh SK, Singh P.

Adv Protein Chem Struct Biol. 2015;100:89-112. doi: 10.1016/bs.apcsb.2015.07.001. Review.


Structural identification of putative USPs in Catharanthus roseus.

Bahieldin A, Atef A, Shokry AM, Al-Karim S, Al Attas SG, Gadallah NO, Edris S, Al-Kordy MA, Omer AM, Sabir JS, Ramadan AM, Al-Hajar AS, Makki RM, Hassan SM, El-Domyati FM.

C R Biol. 2015 Oct;338(10):643-9. doi: 10.1016/j.crvi.2015.07.008. Epub 2015 Aug 28.


Quaternization enhances the transgene expression efficacy of aminoglycoside-derived polymers.

Miryala B, Feng Y, Omer A, Potta T, Rege K.

Int J Pharm. 2015 Jul 15;489(1-2):18-29. doi: 10.1016/j.ijpharm.2015.04.026. Epub 2015 Apr 15.


Saraca indica bark extract shows in vitro antioxidant, antibreast cancer activity and does not exhibit toxicological effects.

Yadav NK, Saini KS, Hossain Z, Omer A, Sharma C, Gayen JR, Singh P, Arya KR, Singh RK.

Oxid Med Cell Longev. 2015;2015:205360. doi: 10.1155/2015/205360. Epub 2015 Mar 16.


Alternative methods in toxicology: CFU assays application, limitation and future prospective.

Yadav NK, Shukla P, Omer A, Singh P, Singh RK.

Drug Chem Toxicol. 2016;39(1):1-12. doi: 10.3109/01480545.2014.994217. Epub 2015 Feb 13. Review.


A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL.

Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8.


Autoimmune hepatitis with multiple sclerosis and graves disease: coincidence or association?

Nadhem ON, Janabi MA, Omer AR, Wan B.

Case Rep Gastroenterol. 2014 Oct 8;8(2):319-23. doi: 10.1159/000368551. eCollection 2014 Sep.


Molecular insights of protein contour recognition with ligand pharmacophoric sites through combinatorial library design and MD simulation in validating HTLV-1 PR inhibitors.

Selvaraj C, Omer A, Singh P, Singh SK.

Mol Biosyst. 2015 Jan;11(1):178-89. doi: 10.1039/c4mb00486h. Epub 2014 Oct 22.


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