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Items: 1 to 50 of 55

1.

Performing DNA nanotechnology operations on a zebrafish.

Yang J, Meng Z, Liu Q, Shimada Y, Olsthoorn RCL, Spaink HP, Herrmann A, Kros A.

Chem Sci. 2018 Jul 20;9(36):7271-7276. doi: 10.1039/c8sc01771a. eCollection 2018 Sep 28.

2.

Zero-Depth Interfacial Nanopore Capillaries.

Arjmandi-Tash H, Bellunato A, Wen C, Olsthoorn RC, Scheicher RH, Zhang SL, Schneider GF.

Adv Mater. 2018 Mar;30(9). doi: 10.1002/adma.201703602. Epub 2018 Jan 26.

PMID:
29372574
3.

Mechanism and structural diversity of exoribonuclease-resistant RNA structures in flaviviral RNAs.

MacFadden A, O'Donoghue Z, Silva PAGC, Chapman EG, Olsthoorn RC, Sterken MG, Pijlman GP, Bredenbeek PJ, Kieft JS.

Nat Commun. 2018 Jan 9;9(1):119. doi: 10.1038/s41467-017-02604-y.

4.

Membrane Fusion Mediated Intracellular Delivery of Lipid Bilayer Coated Mesoporous Silica Nanoparticles.

Yang J, Tu J, Lamers GEM, Olsthoorn RCL, Kros A.

Adv Healthc Mater. 2017 Oct;6(20). doi: 10.1002/adhm.201700759. Epub 2017 Sep 25.

PMID:
28945015
5.

A compensatory mutagenesis study of a conserved hairpin in the M gene segment of influenza A virus shows its role in virus replication.

Spronken MI, van de Sandt CE, de Jongh EP, Vuong O, van der Vliet S, Bestebroer TM, Olsthoorn RCL, Rimmelzwaan GF, Fouchier RAM, Gultyaev AP.

RNA Biol. 2017 Nov 2;14(11):1606-1616. doi: 10.1080/15476286.2017.1338243. Epub 2017 Jul 21.

6.

Mechanical unfolding kinetics of the SRV-1 gag-pro mRNA pseudoknot: possible implications for -1 ribosomal frameshifting stimulation.

Zhong Z, Yang L, Zhang H, Shi J, Vandana JJ, Lam DT, Olsthoorn RC, Lu L, Chen G.

Sci Rep. 2016 Dec 21;6:39549. doi: 10.1038/srep39549.

7.

Subtype-specific structural constraints in the evolution of influenza A virus hemagglutinin genes.

Gultyaev AP, Spronken MI, Richard M, Schrauwen EJ, Olsthoorn RC, Fouchier RA.

Sci Rep. 2016 Dec 14;6:38892. doi: 10.1038/srep38892.

8.

Drug Delivery via Cell Membrane Fusion Using Lipopeptide Modified Liposomes.

Yang J, Bahreman A, Daudey G, Bussmann J, Olsthoorn RC, Kros A.

ACS Cent Sci. 2016 Sep 28;2(9):621-630. Epub 2016 Aug 22.

9.

Application of Coiled Coil Peptides in Liposomal Anticancer Drug Delivery Using a Zebrafish Xenograft Model.

Yang J, Shimada Y, Olsthoorn RC, Snaar-Jagalska BE, Spaink HP, Kros A.

ACS Nano. 2016 Aug 23;10(8):7428-35. doi: 10.1021/acsnano.6b01410. Epub 2016 Aug 11.

10.

Monitoring ribosomal frameshifting as a platform to screen anti-riboswitch drug candidates.

Yu CH, Olsthoorn RC.

Methods Enzymol. 2015;550:385-93. doi: 10.1016/bs.mie.2014.10.041. Epub 2014 Dec 29.

PMID:
25605396
11.

RNA structural constraints in the evolution of the influenza A virus genome NP segment.

Gultyaev AP, Tsyganov-Bodounov A, Spronken MI, van der Kooij S, Fouchier RA, Olsthoorn RC.

RNA Biol. 2014;11(7):942-52. doi: 10.4161/rna.29730. Epub 2014 Jul 23.

12.

Role of the Pepino mosaic virus 3'-untranslated region elements in negative-strand RNA synthesis in vitro.

Osman TA, Olsthoorn RC, Livieratos IC.

Virus Res. 2014 Sep 22;190:110-7. doi: 10.1016/j.virusres.2014.06.018. Epub 2014 Jul 19.

PMID:
25051146
13.

G-quadruplexes within prion mRNA: the missing link in prion disease?

Olsthoorn RC.

Nucleic Acids Res. 2014 Aug;42(14):9327-33. doi: 10.1093/nar/gku559. Epub 2014 Jul 16.

14.
15.

Tospovirus ambisense genomic RNA segments use almost complete repertoire of stable tetraloops in the intergenic region.

Clabbers MT, Olsthoorn RC, Gultyaev AP.

Bioinformatics. 2014 Jul 1;30(13):1800-4. doi: 10.1093/bioinformatics/btu122. Epub 2014 Mar 3.

PMID:
24590440
16.

Stimulation of ribosomal frameshifting by RNA G-quadruplex structures.

Yu CH, Teulade-Fichou MP, Olsthoorn RC.

Nucleic Acids Res. 2014 Feb;42(3):1887-92. doi: 10.1093/nar/gkt1022. Epub 2013 Oct 30.

17.

Structural and thermodynamic signatures that define pseudotriloop RNA hairpins.

van der Werf R, Wijmenga SS, Heus HA, Olsthoorn RC.

RNA. 2013 Dec;19(12):1833-9. doi: 10.1261/rna.039636.113. Epub 2013 Oct 24.

18.

Exploiting preQ(1) riboswitches to regulate ribosomal frameshifting.

Yu CH, Luo J, Iwata-Reuyl D, Olsthoorn RC.

ACS Chem Biol. 2013 Apr 19;8(4):733-40. doi: 10.1021/cb300629b. Epub 2013 Jan 25.

PMID:
23327288
19.

In vitro template-dependent synthesis of Pepino mosaic virus positive- and negative-strand RNA by its RNA-dependent RNA polymerase.

Osman TA, Olsthoorn RC, Livieratos IC.

Virus Res. 2012 Aug;167(2):267-72. doi: 10.1016/j.virusres.2012.05.008. Epub 2012 May 19.

PMID:
22617023
20.

Single-walled carbon nanotubes as scaffolds to concentrate DNA for the study of DNA-protein interactions.

Liu Z, Galli F, Waterreus WJ, Meulenbroek E, Koning RI, Lamers GE, Olsthoorn RC, Pannu N, Oosterkamp TH, Koster AJ, Dame RT, Abrahams JP.

Chemphyschem. 2012 Apr 23;13(6):1569-75. doi: 10.1002/cphc.201100896. Epub 2012 Mar 7.

PMID:
22407519
21.

The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter.

Skov J, Gaudin M, Podbevsek P, Olsthoorn RC, Petersen M.

RNA. 2012 May;18(5):992-1000. doi: 10.1261/rna.029918.111. Epub 2012 Mar 5.

22.

Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting.

Yu CH, Noteborn MH, Pleij CW, Olsthoorn RC.

Nucleic Acids Res. 2011 Nov 1;39(20):8952-9. doi: 10.1093/nar/gkr579. Epub 2011 Jul 29.

23.

Upstream start codon in segment 4 of North American H2 avian influenza A viruses.

Girard G, Gultyaev AP, Olsthoorn RC.

Infect Genet Evol. 2011 Mar;11(2):489-95. doi: 10.1016/j.meegid.2010.12.014. Epub 2011 Jan 11.

24.

Influenza virus RNA structure: unique and common features.

Gultyaev AP, Fouchier RA, Olsthoorn RC.

Int Rev Immunol. 2010 Dec;29(6):533-56. doi: 10.3109/08830185.2010.507828. Epub 2010 Oct 5. Review.

PMID:
20923332
25.

Stimulation of ribosomal frameshifting by antisense LNA.

Yu CH, Noteborn MH, Olsthoorn RC.

Nucleic Acids Res. 2010 Dec;38(22):8277-83. doi: 10.1093/nar/gkq650. Epub 2010 Aug 6.

26.

Functional analysis of the SRV-1 RNA frameshifting pseudoknot.

Olsthoorn RC, Reumerman R, Hilbers CW, Pleij CW, Heus HA.

Nucleic Acids Res. 2010 Nov;38(21):7665-72. doi: 10.1093/nar/gkq629. Epub 2010 Jul 17.

27.

Group-specific structural features of the 5'-proximal sequences of coronavirus genomic RNAs.

Chen SC, Olsthoorn RC.

Virology. 2010 May 25;401(1):29-41. doi: 10.1016/j.virol.2010.02.007. Epub 2010 Mar 4.

28.

A family of non-classical pseudoknots in influenza A and B viruses.

Gultyaev AP, Olsthoorn RC.

RNA Biol. 2010 Mar-Apr;7(2):125-9. Epub 2010 Mar 25.

PMID:
20200490
29.

In vitro and in vivo studies of the RNA conformational switch in Alfalfa mosaic virus.

Chen SC, Olsthoorn RC.

J Virol. 2010 Feb;84(3):1423-9. doi: 10.1128/JVI.01443-09. Epub 2009 Nov 18.

30.

Structural homology between bamboo mosaic virus and its satellite RNAs in the 5'untranslated region.

Chen SC, Desprez A, Olsthoorn RC.

J Gen Virol. 2010 Mar;91(Pt 3):782-7. doi: 10.1099/vir.0.015941-0. Epub 2009 Nov 11.

PMID:
19906937
31.

New structure model for the packaging signal in the genome of group IIa coronaviruses.

Chen SC, van den Born E, van den Worm SH, Pleij CW, Snijder EJ, Olsthoorn RC.

J Virol. 2007 Jun;81(12):6771-4. Epub 2007 Apr 11.

32.

An RNA conformational shift in recent H5N1 influenza A viruses.

Gultyaev AP, Heus HA, Olsthoorn RC.

Bioinformatics. 2007 Feb 1;23(3):272-6. Epub 2006 Nov 7.

PMID:
17090581
33.

Idiosyncratic behaviour of tRNA-like structures in translation of plant viral RNA genomes.

Rudinger-Thirion J, Olsthoorn RC, Giegé R, Barends S.

J Mol Biol. 2006 Feb 3;355(5):873-8. Epub 2005 Nov 28.

PMID:
16337653
34.

Novel application of sRNA: stimulation of ribosomal frameshifting.

Olsthoorn RC, Laurs M, Sohet F, Hilbers CW, Heus HA, Pleij CW.

RNA. 2004 Nov;10(11):1702-3.

35.

Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite genome and conserved 3'-terminal structures among members of the genus Crinivirus.

Livieratos IC, Eliasco E, Müller G, Olsthoorn RC, Salazar LF, Pleij CW, Coutts RH.

J Gen Virol. 2004 Jul;85(Pt 7):2065-75.

PMID:
15218192
36.
37.

A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions.

Haasnoot PC, Bol JF, Olsthoorn RC.

Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12596-600. Epub 2003 Oct 20.

38.

RNA recombination in brome mosaic virus: effects of strand-specific stem-loop inserts.

Olsthoorn RC, Bruyere A, Dzianott A, Bujarski JJ.

J Virol. 2002 Dec;76(24):12654-62.

40.

In vivo generation of hybrids between different species of RNA phages.

van Meerten D, Groeneveld H, Miller DM, Marechal GB, Tsareva NV, Olsthoorn RC, de la Peña M, van Duin J.

J Gen Virol. 2002 May;83(Pt 5):1223-35.

PMID:
11961278
42.

Kissing interaction between 3' noncoding and coding sequences is essential for porcine arterivirus RNA replication.

Verheije MH, Olsthoorn RC, Kroese MV, Rottier PJ, Meulenberg JJ.

J Virol. 2002 Feb;76(3):1521-6.

43.

Translation of a nonpolyadenylated viral RNA is enhanced by binding of viral coat protein or polyadenylation of the RNA.

Neeleman L, Olsthoorn RC, Linthorst HJ, Bol JF.

Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14286-91. Epub 2001 Nov 20.

45.

Peptide display on live MS2 phage: restrictions at the RNA genome level.

van Meerten D, Olsthoorn RC, van Duin J, Verhaert RM.

J Gen Virol. 2001 Jul;82(Pt 7):1797-805.

PMID:
11413393
46.

Recognition of cis-acting sequences in RNA 3 of Prunus necrotic ringspot virus by the replicase of Alfalfa mosaic virus.

Aparicio F, Sánchez-Navarro JA, Olsthoorn RC, Pallás V, Bol JF.

J Gen Virol. 2001 Apr;82(Pt 4):947-51.

PMID:
11257202
47.
48.

A conformational switch at the 3' end of a plant virus RNA regulates viral replication.

Olsthoorn RC, Mertens S, Brederode FT, Bol JF.

EMBO J. 1999 Sep 1;18(17):4856-64.

49.

Sense and nonsense DNA.

Olsthoorn RC, Van Duin J.

Trends Biochem Sci. 1998 Apr;23(4):125. No abstract available.

PMID:
9584611
50.

Rescue of the RNA phage genome from RNase III cleavage.

Klovins J, van Duin J, Olsthoorn RC.

Nucleic Acids Res. 1997 Nov 1;25(21):4201-8.

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