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Items: 26

1.

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Aug 12. doi: 10.1038/s41587-019-0217-9. [Epub ahead of print]

PMID:
31406327
2.

High-coverage, long-read sequencing of Han Chinese trio reference samples.

Wang YC, Olson ND, Deikus G, Shah H, Wenger AM, Trow J, Xiao C, Sherry S, Salit ML, Zook JM, Smith M, Sebra R.

Sci Data. 2019 Jun 14;6(1):91. doi: 10.1038/s41597-019-0098-2.

3.

An open resource for accurately benchmarking small variant and reference calls.

Zook JM, McDaniel J, Olson ND, Wagner J, Parikh H, Heaton H, Irvine SA, Trigg L, Truty R, McLean CY, De La Vega FM, Xiao C, Sherry S, Salit M.

Nat Biotechnol. 2019 May;37(5):561-566. doi: 10.1038/s41587-019-0074-6. Epub 2019 Apr 1.

PMID:
30936564
4.

metagenomeFeatures: An R package for working with 16S rRNA reference databases and marker-gene survey feature data.

Olson ND, Shah N, Kancherla J, Wagner J, Paulson JN, Corrada-Bravo H.

Bioinformatics. 2019 Mar 1. pii: btz136. doi: 10.1093/bioinformatics/btz136. [Epub ahead of print]

PMID:
30821316
5.

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ.

Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5.

6.

Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water.

Kulkarni P, Olson ND, Paulson JN, Pop M, Maddox C, Claye E, Rosenberg Goldstein RE, Sharma M, Gibbs SG, Mongodin EF, Sapkota AR.

Sci Total Environ. 2018 Oct 15;639:1126-1137. doi: 10.1016/j.scitotenv.2018.05.178. Epub 2018 May 26.

PMID:
29929281
7.

Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.

Olson ND, Treangen TJ, Hill CM, Cepeda-Espinoza V, Ghurye J, Koren S, Pop M.

Brief Bioinform. 2017 Aug 7. doi: 10.1093/bib/bbx098. [Epub ahead of print]

PMID:
28968737
8.

Challenging a bioinformatic tool's ability to detect microbial contaminants using in silico whole genome sequencing data.

Olson ND, Zook JM, Morrow JB, Lin NJ.

PeerJ. 2017 Sep 12;5:e3729. doi: 10.7717/peerj.3729. eCollection 2017.

9.

Antibiotic Concentrations Decrease during Wastewater Treatment but Persist at Low Levels in Reclaimed Water.

Kulkarni P, Olson ND, Raspanti GA, Rosenberg Goldstein RE, Gibbs SG, Sapkota A, Sapkota AR.

Int J Environ Res Public Health. 2017 Jun 21;14(6). pii: E668. doi: 10.3390/ijerph14060668.

10.

Performing Skin Microbiome Research: A Method to the Madness.

Kong HH, Andersson B, Clavel T, Common JE, Jackson SA, Olson ND, Segre JA, Traidl-Hoffmann C.

J Invest Dermatol. 2017 Mar;137(3):561-568. doi: 10.1016/j.jid.2016.10.033. Epub 2017 Jan 4. Review.

11.

Evaluation of microbial qPCR workflows using engineered Saccharomyces cerevisiae.

Da Silva SM, Vang LK, Olson ND, Lund SP, Downey AS, Kelman Z, Salit ML, Lin NJ, Morrow JB.

Biomol Detect Quantif. 2016 Feb 19;7:27-33. doi: 10.1016/j.bdq.2016.01.001. eCollection 2016 Mar.

12.

International interlaboratory study comparing single organism 16S rRNA gene sequencing data: Beyond consensus sequence comparisons.

Olson ND, Lund SP, Zook JM, Rojas-Cornejo F, Beck B, Foy C, Huggett J, Whale AS, Sui Z, Baoutina A, Dobeson M, Partis L, Morrow JB.

Biomol Detect Quantif. 2015 Mar 5;3:17-24. doi: 10.1016/j.bdq.2015.01.004. eCollection 2015 Mar.

13.

Health Disparities in Drug- and Alcohol-Use Disorders: A 12-Year Longitudinal Study of Youths After Detention.

Welty LJ, Harrison AJ, Abram KM, Olson ND, Aaby DA, McCoy KP, Washburn JJ, Teplin LA.

Am J Public Health. 2016 May;106(5):872-80. doi: 10.2105/AJPH.2015.303032. Epub 2016 Mar 17.

14.

PEPR: pipelines for evaluating prokaryotic references.

Olson ND, Zook JM, Samarov DV, Jackson SA, Salit ML.

Anal Bioanal Chem. 2016 Apr;408(11):2975-83. doi: 10.1007/s00216-015-9299-5. Epub 2016 Mar 2.

15.

Best practices for evaluating single nucleotide variant calling methods for microbial genomics.

Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM.

Front Genet. 2015 Jul 7;6:235. doi: 10.3389/fgene.2015.00235. eCollection 2015. Review.

16.

Firearm homicide and other causes of death in delinquents: a 16-year prospective study.

Teplin LA, Jakubowski JA, Abram KM, Olson ND, Stokes ML, Welty LJ.

Pediatrics. 2014 Jul;134(1):63-73. doi: 10.1542/peds.2013-3966. Epub 2014 Jun 16.

17.

Diazotrophic diversity in the Caribbean coral, Montastraea cavernosa.

Olson ND, Lesser MP.

Arch Microbiol. 2013 Dec;195(12):853-9. doi: 10.1007/s00203-013-0937-z. Epub 2013 Nov 12.

PMID:
24217873
18.

DNA extract characterization process for microbial detection methods development and validation.

Olson ND, Morrow JB.

BMC Res Notes. 2012 Dec 3;5:668. doi: 10.1186/1756-0500-5-668.

19.

Impact of processing method on recovery of bacteria from wipes used in biological surface sampling.

Downey AS, Da Silva SM, Olson ND, Filliben JJ, Morrow JB.

Appl Environ Microbiol. 2012 Aug;78(16):5872-81. doi: 10.1128/AEM.00873-12. Epub 2012 Jun 15.

20.

Nitrogen fixation and nitrogen transformations in marine symbioses.

Fiore CL, Jarett JK, Olson ND, Lesser MP.

Trends Microbiol. 2010 Oct;18(10):455-63. doi: 10.1016/j.tim.2010.07.001. Epub 2010 Jul 30. Review.

PMID:
20674366
21.

Questions and reflections: the use of motivational interviewing microskills in a peer-led brief alcohol intervention for college students.

Tollison SJ, Lee CM, Neighbors C, Neil TA, Olson ND, Larimer ME.

Behav Ther. 2008 Jun;39(2):183-94. doi: 10.1016/j.beth.2007.07.001. Epub 2007 Nov 26.

22.
23.

Basement membranes and neuropathy.

Olson ND.

Muscle Nerve. 1983 Jan;6(1):77. No abstract available.

PMID:
6843588
24.

Thin muscle capillary basement membranes in myotonic dystrophy.

Olson ND, Nuttall FQ, Sinha A, Kilo C, Williamson JR.

Diabetes. 1979 Jul;28(7):686-9.

PMID:
446922
25.

Peripheral neuropathy in myotonic dystrophy. Relation to glucose intolerance.

Olson ND, Jou MF, Quast JE, Nuttall FQ.

Arch Neurol. 1978 Nov;35(11):741-5.

PMID:
718472
26.

Letter: Water intoxication and psychosis.

Olson ND, Raskind MA, Christopher TG, Nielsen J.

Ann Intern Med. 1974 Feb;80(2):279-81. No abstract available.

PMID:
4811809

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