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Items: 15

1.

Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Mar 26;10(1):1451. doi: 10.1038/s41467-019-09423-3.

2.

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network.

Bouma-Gregson K, Olm MR, Probst AJ, Anantharaman K, Power ME, Banfield JF.

ISME J. 2019 Jun;13(6):1618-1634. doi: 10.1038/s41396-019-0374-3. Epub 2019 Feb 26.

3.

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF.

Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1.

4.

Megaphages infect Prevotella and variants are widespread in gut microbiomes.

Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF.

Nat Microbiol. 2019 Apr;4(4):693-700. doi: 10.1038/s41564-018-0338-9. Epub 2019 Jan 28.

5.

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Jan 28;10(1):463. doi: 10.1038/s41467-018-08246-y. Erratum in: Nat Commun. 2019 Mar 26;10(1):1451.

6.

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.

Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, Morowitz MJ, Banfield JF.

Microbiome. 2018 Jun 20;6(1):112. doi: 10.1186/s40168-018-0493-5.

7.

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles.

Brown CT, Xiong W, Olm MR, Thomas BC, Baker R, Firek B, Morowitz MJ, Hettich RL, Banfield JF.

MBio. 2018 Apr 10;9(2). pii: e00441-18. doi: 10.1128/mBio.00441-18.

8.

Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome.

Rahman SF, Olm MR, Morowitz MJ, Banfield JF.

mSystems. 2018 Jan 9;3(1). pii: e00123-17. doi: 10.1128/mSystems.00123-17. eCollection 2018 Jan-Feb.

9.

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF.

Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w.

10.

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.

Olm MR, Brown CT, Brooks B, Banfield JF.

ISME J. 2017 Dec;11(12):2864-2868. doi: 10.1038/ismej.2017.126. Epub 2017 Jul 25.

11.

The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis.

Olm MR, Butterfield CN, Copeland A, Boles TC, Thomas BC, Banfield JF.

MBio. 2017 Feb 21;8(1). pii: e01969-16. doi: 10.1128/mBio.01969-16.

12.

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield JF.

Genome Res. 2017 Apr;27(4):601-612. doi: 10.1101/gr.213256.116. Epub 2017 Jan 10.

13.

Measurement of bacterial replication rates in microbial communities.

Brown CT, Olm MR, Thomas BC, Banfield JF.

Nat Biotechnol. 2016 Dec;34(12):1256-1263. doi: 10.1038/nbt.3704. Epub 2016 Nov 7.

14.

Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems.

Dedrick RM, Mavrich TN, Ng WL, Cervantes Reyes JC, Olm MR, Rush RE, Jacobs-Sera D, Russell DA, Hatfull GF.

Mol Microbiol. 2016 Aug;101(4):625-44. doi: 10.1111/mmi.13414. Epub 2016 Jun 10.

15.

Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.

Pope WH, Anders KR, Baird M, Bowman CA, Boyle MM, Broussard GW, Chow T, Clase KL, Cooper S, Cornely KA, DeJong RJ, Delesalle VA, Deng L, Dunbar D, Edgington NP, Ferreira CM, Weston Hafer K, Hartzog GA, Hatherill JR, Hughes LE, Ipapo K, Krukonis GP, Meier CG, Monti DL, Olm MR, Page ST, Peebles CL, Rinehart CA, Rubin MR, Russell DA, Sanders ER, Schoer M, Shaffer CD, Wherley J, Vazquez E, Yuan H, Zhang D, Cresawn SG, Jacobs-Sera D, Hendrix RW, Hatfull GF.

J Virol. 2014 Mar;88(5):2461-80. doi: 10.1128/JVI.03363-13. Epub 2013 Dec 11.

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