Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 38

1.

An intragenic duplication of TRPS1 leading to abnormal transcripts and causing trichorhinophalangeal syndrome type I.

Zepeda-Mendoza CJ, Cousin MA, Basu S, Jenkinson WG, Oliver GR, Pittock ST, Baughn LA, Klee E, Babovic-Vuksanovic D.

Cold Spring Harb Mol Case Stud. 2019 Oct 29. pii: mcs.a004655. doi: 10.1101/mcs.a004655. [Epub ahead of print]

2.

A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease.

Oliver GR, Tang X, Schultz-Rogers LE, Vidal-Folch N, Jenkinson WG, Schwab TL, Gaonkar K, Cousin MA, Nair A, Basu S, Chanana P, Oglesbee D, Klee EW.

PLoS One. 2019 Oct 2;14(10):e0223337. doi: 10.1371/journal.pone.0223337. eCollection 2019.

3.

RNA-Seq detects a SAMD12-EXT1 fusion transcript and leads to the discovery of an EXT1 deletion in a child with multiple osteochondromas.

Oliver GR, Blackburn PR, Ellingson MS, Conboy E, Pinto E Vairo F, Webley M, Thorland E, Ferber M, Van Hul E, van der Werf IM, Wuyts W, Babovic-Vuksanovic D, Klee EW.

Mol Genet Genomic Med. 2019 Mar;7(3):e00560. doi: 10.1002/mgg3.560. Epub 2019 Jan 10.

4.

Multiple isodicentric Y chromosomes in myeloid malignancies: a unique cytogenetic entity and potential therapeutic target.

Mangaonkar AA, Patnaik MM, Oliver GR, Rao KW, Kaiser-Rogers K, Davila JI, Fadra N, Wehrs RN, Elliott MA, Greipp PT, Halling KC, Van Dyke DL.

Leuk Lymphoma. 2019 Mar;60(3):821-824. doi: 10.1080/10428194.2018.1498492. Epub 2018 Aug 30. No abstract available.

PMID:
30160574
5.

Characterization of three ciliopathy pedigrees expands the phenotype associated with biallelic C2CD3 variants.

Boczek NJ, Hopp K, Benoit L, Kraft D, Cousin MA, Blackburn PR, Madsen CD, Oliver GR, Nair AA, Na J, Bianchi DW, Beek G, Harris PC, Pichurin P, Klee EW.

Eur J Hum Genet. 2018 Dec;26(12):1797-1809. doi: 10.1038/s41431-018-0222-3. Epub 2018 Aug 10.

6.

Assessing Human Genetic Variations in Glucose Transporter SLC2A10 and Their Role in Altering Structural and Functional Properties.

Zimmermann MT, Urrutia R, Cousin MA, Oliver GR, Klee EW.

Front Genet. 2018 Jul 25;9:276. doi: 10.3389/fgene.2018.00276. eCollection 2018.

7.

Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumors.

Winters JL, Davila JI, McDonald AM, Nair AA, Fadra N, Wehrs RN, Thomas BC, Balcom JR, Jin L, Wu X, Voss JS, Klee EW, Oliver GR, Graham RP, Neff JL, Rumilla KM, Aypar U, Kipp BR, Jenkins RB, Jen J, Halling KC.

J Mol Diagn. 2018 Jul;20(4):495-511. doi: 10.1016/j.jmoldx.2018.03.007. Epub 2018 Jun 19.

8.

Utility of DNA, RNA, Protein, and Functional Approaches to Solve Cryptic Immunodeficiencies.

Cousin MA, Smith MJ, Sigafoos AN, Jin JJ, Murphree MI, Boczek NJ, Blackburn PR, Oliver GR, Aleff RA, Clark KJ, Wieben ED, Joshi AY, Pichurin PN, Abraham RS, Klee EW.

J Clin Immunol. 2018 Apr;38(3):307-319. doi: 10.1007/s10875-018-0499-6. Epub 2018 Apr 18.

PMID:
29671115
9.

A cross-sectional analysis of Wits and Riedel in adults with skeletal III malocclusion: How informative are they?

Oliver GR, Grimes K, Pandis N, Fleming PS.

Orthod Craniofac Res. 2018 Apr 6. doi: 10.1111/ocr.12225. [Epub ahead of print]

PMID:
29624856
10.

Comprehensive Genomic Profiling of a Rare Thyroid Follicular Dendritic Cell Sarcoma.

Davila JI, Starr JS, Attia S, Wang C, Knudson RA, Necela BM, Sarangi V, Sun Z, Ren Y, Casler JD, Menke DM, Oliver GR, Joseph RW, Copland JA, Parker AS, Kocher JA, Thompson EA, Smallridge RC, Asmann YW.

Rare Tumors. 2017 Sep 15;9(2):6834. doi: 10.4081/rt.2017.6834. eCollection 2017 Jul 3.

11.

Functional validation reveals the novel missense V419L variant in TGFBR2 associated with Loeys-Dietz syndrome (LDS) impairs canonical TGF-β signaling.

Cousin MA, Zimmermann MT, Mathison AJ, Blackburn PR, Boczek NJ, Oliver GR, Lomberk GA, Urrutia RA, Deyle DR, Klee EW.

Cold Spring Harb Mol Case Stud. 2017 Jul 5;3(4). pii: a001727. doi: 10.1101/mcs.a001727. Print 2017 Jul.

12.

Experience with precision genomics and tumor board, indicates frequent target identification, but barriers to delivery.

Bryce AH, Egan JB, Borad MJ, Stewart AK, Nowakowski GS, Chanan-Khan A, Patnaik MM, Ansell SM, Banck MS, Robinson SI, Mansfield AS, Klee EW, Oliver GR, McCormick JB, Huneke NE, Tagtow CM, Jenkins RB, Rumilla KM, Kerr SE, Kocher JA, Beck SA, Fernandez-Zapico ME, Farrugia G, Lazaridis KN, McWilliams RR.

Oncotarget. 2017 Apr 18;8(16):27145-27154. doi: 10.18632/oncotarget.16057.

13.

Molecular modeling and molecular dynamic simulation of the effects of variants in the TGFBR2 kinase domain as a paradigm for interpretation of variants obtained by next generation sequencing.

Zimmermann MT, Urrutia R, Oliver GR, Blackburn PR, Cousin MA, Bozeck NJ, Klee EW.

PLoS One. 2017 Feb 9;12(2):e0170822. doi: 10.1371/journal.pone.0170822. eCollection 2017.

14.

Molecular Modeling and Functional Analysis of Exome Sequencing-Derived Variants of Unknown Significance Identify a Novel, Constitutively Active FGFR2 Mutant in Cholangiocarcinoma.

Egan JB, Marks DL, Hogenson TL, Vrabel AM, Sigafoos AN, Tolosa EJ, Carr RM, Safgren SL, Hesles EE, Almada LL, Romecin-Duran PA, Iguchi E, Ala'Aldeen A, Kocher JA, Oliver GR, Prodduturi N, Mead DW, Hossain A, Huneke NE, Tagtow CM, Ailawadhi S, Ansell SM, Banck MS, Bryce AH, Carballido EM, Chanan-Khan AA, Curtis KK, Resnik E, Gawryletz CD, Go RS, Halfdanarson TR, Ho TH, Joseph RW, Kapoor P, Mansfield AS, Meurice N, Nageswara Rao AA, Nowakowski GS, Pardanani A, Parikh SA, Cheville JC, Feldman AL, Ramanathan RK, Robinson SI, Tibes R, Finnes HD, McCormick JB, McWilliams RR, Jatoi A, Patnaik MM, Silva AC, Wieben ED, McAllister TM, Rumilla KM, Kerr SE, Lazaridis KN, Farrugia G, Stewart AK, Clark KJ, Kennedy EJ, Klee EW, Borad MJ, Fernandez-Zapico ME.

JCO Precis Oncol. 2017;2017. doi: 10.1200/PO.17.00018. Epub 2017 Aug 1.

15.

What I wish I'd learned at dental school.

Oliver GR, Lynch CD, Chadwick BL, Santini A, Wilson NH.

Br Dent J. 2016 Aug 26;221(4):187-94. doi: 10.1038/sj.bdj.2016.602.

PMID:
27561579
16.

"The molecule's the thing:" the promise of molecular modeling and dynamic simulations in aiding the prioritization and interpretation of genomic testing results.

Oliver GR, Zimmermann MT, Klee EW, Urrutia RA.

Version 3. F1000Res. 2016 Apr 27 [revised 2016 Jan 1];5:766. doi: 10.12688/f1000research.8600.3. eCollection 2016.

17.

The Hedgehog pathway as targetable vulnerability with 5-azacytidine in myelodysplastic syndrome and acute myeloid leukemia.

Tibes R, Al-Kali A, Oliver GR, Delman DH, Hansen N, Bhagavatula K, Mohan J, Rakhshan F, Wood T, Foran JM, Mesa RA, Bogenberger JM.

J Hematol Oncol. 2015 Oct 20;8:114. doi: 10.1186/s13045-015-0211-8.

18.

PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data.

Hart SN, Moore RM, Zimmermann MT, Oliver GR, Egan JB, Bryce AH, Kocher JA.

PeerJ. 2015 May 19;3:e970. doi: 10.7717/peerj.970. eCollection 2015.

19.

Bioinformatics for clinical next generation sequencing.

Oliver GR, Hart SN, Klee EW.

Clin Chem. 2015 Jan;61(1):124-35. doi: 10.1373/clinchem.2014.224360. Epub 2014 Dec 1. Review.

20.

PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.

Wang C, Evans JM, Bhagwate AV, Prodduturi N, Sarangi V, Middha M, Sicotte H, Vedell PT, Hart SN, Oliver GR, Kocher JP, Maurer MJ, Novak AJ, Slager SL, Cerhan JR, Asmann YW.

Bioinformatics. 2014 Sep 15;30(18):2678-80. doi: 10.1093/bioinformatics/btu363. Epub 2014 May 29.

21.

Isomeric ionic lithium isonicotinate three-dimensional networks and single-crystal-to-single-crystal rearrangements generating microporous materials.

Abrahams BF, Dharma AD, Grannas MJ, Hudson TA, Maynard-Casely HE, Oliver GR, Robson R, White KF.

Inorg Chem. 2014 May 19;53(10):4956-69. doi: 10.1021/ic403134c. Epub 2014 May 8.

PMID:
24811943
22.

Integrated genomic characterization reveals novel, therapeutically relevant drug targets in FGFR and EGFR pathways in sporadic intrahepatic cholangiocarcinoma.

Borad MJ, Champion MD, Egan JB, Liang WS, Fonseca R, Bryce AH, McCullough AE, Barrett MT, Hunt K, Patel MD, Young SW, Collins JM, Silva AC, Condjella RM, Block M, McWilliams RR, Lazaridis KN, Klee EW, Bible KC, Harris P, Oliver GR, Bhavsar JD, Nair AA, Middha S, Asmann Y, Kocher JP, Schahl K, Kipp BR, Barr Fritcher EG, Baker A, Aldrich J, Kurdoglu A, Izatt T, Christoforides A, Cherni I, Nasser S, Reiman R, Phillips L, McDonald J, Adkins J, Mastrian SD, Placek P, Watanabe AT, Lobello J, Han H, Von Hoff D, Craig DW, Stewart AK, Carpten JD.

PLoS Genet. 2014 Feb 13;10(2):e1004135. doi: 10.1371/journal.pgen.1004135. eCollection 2014 Feb.

23.

Long-range transcriptome sequencing reveals cancer cell growth regulatory chimeric mRNA.

Plebani R, Oliver GR, Trerotola M, Guerra E, Cantanelli P, Apicella L, Emerson A, Albiero A, Harkin PD, Kennedy RD, Alberti S.

Neoplasia. 2012 Nov;14(11):1087-96.

24.

Detection of tumor PIK3CA status in metastatic breast cancer using peripheral blood.

Higgins MJ, Jelovac D, Barnathan E, Blair B, Slater S, Powers P, Zorzi J, Jeter SC, Oliver GR, Fetting J, Emens L, Riley C, Stearns V, Diehl F, Angenendt P, Huang P, Cope L, Argani P, Murphy KM, Bachman KE, Greshock J, Wolff AC, Park BH.

Clin Cancer Res. 2012 Jun 15;18(12):3462-9. doi: 10.1158/1078-0432.CCR-11-2696. Epub 2012 Mar 15.

25.

Considerations for clinical read alignment and mutational profiling using next-generation sequencing.

Oliver GR.

Version 2. F1000Res. 2012 Jul 16 [revised 2012 Jan 1];1:2. doi: 10.12688/f1000research.1-2.v2. eCollection 2012.

26.

A multicenter analysis of GTX chemotherapy in patients with locally advanced and metastatic pancreatic adenocarcinoma.

De Jesus-Acosta A, Oliver GR, Blackford A, Kinsman K, Flores EI, Wilfong LS, Zheng L, Donehower RC, Cosgrove D, Laheru D, Le DT, Chung K, Diaz LA Jr.

Cancer Chemother Pharmacol. 2012 Feb;69(2):415-24. doi: 10.1007/s00280-011-1704-y. Epub 2011 Jul 29.

27.

The colorectal cancer disease-specific transcriptome may facilitate the discovery of more biologically and clinically relevant information.

Allen WL, Jithesh PV, Oliver GR, Proutski I, Longley DB, Lenz HJ, Proutski V, Harkin P, Johnston PG.

BMC Cancer. 2010 Dec 20;10:687. doi: 10.1186/1471-2407-10-687.

28.

Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues.

Grigoriadis A, Oliver GR, Tanney A, Kendrick H, Smalley MJ, Jat P, Neville AM.

BMC Genomics. 2009 Jul 17;10:324. doi: 10.1186/1471-2164-10-324.

29.

Generation of a non-small cell lung cancer transcriptome microarray.

Tanney A, Oliver GR, Farztdinov V, Kennedy RD, Mulligan JM, Fulton CE, Farragher SM, Field JK, Johnston PG, Harkin DP, Proutski V, Mulligan KA.

BMC Med Genomics. 2008 May 30;1:20. doi: 10.1186/1755-8794-1-20.

30.

Bluetongue trade issues--an Australian perspective.

Oliver GR.

Vet Ital. 2004 Oct-Dec;40(4):688-90.

31.

A smooth muscle tone-dependent stretch-activated migrating motor pattern in isolated guinea-pig distal colon.

Smith TK, Oliver GR, Hennig GW, O'Shea DM, Vanden Berghe P, Kang SH, Spencer NJ.

J Physiol. 2003 Sep 15;551(Pt 3):955-69. Epub 2003 Jul 7.

32.

Soil carbon protection in podocarp/hardwood forest, and effects of conversion to pasture and exotic pine forest.

Beets PN, Oliver GR, Clinton PW.

Environ Pollut. 2002;116 Suppl 1:S63-73.

PMID:
11833919
33.

Risk assessment under FQPA: case study with chlorpyrifos.

Clevelan CB, Oliver GR, Chen B, Mattsson J.

Neurotoxicology. 2001 Oct;22(5):699-706. Review.

PMID:
11770891
34.

Chlorpyrifos: probabilistic assessment of exposure and risk.

Oliver GR, Bolles HG, Shurdut BA.

Neurotoxicology. 2000 Feb-Apr;21(1-2):203-8. Review.

PMID:
10794401
35.

U.S. market basket study to determine residues of the insecticide chlorpyrifos.

Bolles HG, Dixon-White HE, Peterson RK, Tomerlin JR, Day EW Jr, Oliver GR.

J Agric Food Chem. 1999 May;47(5):1817-22.

PMID:
10552457
36.

Accumulation of the enterobacterial common antigen lipid II biosynthetic intermediate stimulates degP transcription in Escherichia coli.

Danese PN, Oliver GR, Barr K, Bowman GD, Rick PD, Silhavy TJ.

J Bacteriol. 1998 Nov;180(22):5875-84.

37.

Dearth of veterinary surgeons.

Oliver GR, Oliver SJ.

Vet Rec. 1987 May 30;120(22):539-40. No abstract available.

PMID:
3672826
38.

Fantasy aggression and learning in emotionally disturbed and normal children.

DAVIDS A, OLIVER GR.

J Proj Tech. 1960 Jun;24:124-8. No abstract available.

PMID:
13814318

Supplemental Content

Loading ...
Support Center