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Items: 18

1.

Structural basis of substrate recognition by a polypeptide processing and secretion transporter.

Kieuvongngam V, Olinares PDB, Palillo A, Oldham ML, Chait BT, Chen J.

Elife. 2020 Jan 14;9. pii: e51492. doi: 10.7554/eLife.51492.

2.

Native Mass Spectrometry Analysis of Affinity-Captured Endogenous Yeast RNA Exosome Complexes.

Olinares PDB, Chait BT.

Methods Mol Biol. 2020;2062:357-382. doi: 10.1007/978-1-4939-9822-7_17.

PMID:
31768985
3.

Mechanisms of opening and closing of the bacterial replicative helicase.

Chase J, Catalano A, Noble AJ, Eng ET, Olinares PD, Molloy K, Pakotiprapha D, Samuels M, Chait B, des Georges A, Jeruzalmi D.

Elife. 2018 Dec 24;7. pii: e41140. doi: 10.7554/eLife.41140.

4.

Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex.

Kang JY, Olinares PD, Chen J, Campbell EA, Mustaev A, Chait BT, Gottesman ME, Darst SA.

Elife. 2017 Mar 20;6. pii: e25478. doi: 10.7554/eLife.25478.

5.

Functional Plasticity of the AgrC Receptor Histidine Kinase Required for Staphylococcal Virulence.

Wang B, Zhao A, Xie Q, Olinares PD, Chait BT, Novick RP, Muir TW.

Cell Chem Biol. 2017 Jan 19;24(1):76-86. doi: 10.1016/j.chembiol.2016.12.008. Epub 2017 Jan 5.

6.

The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators.

Orlova N, Gerding M, Ivashkiv O, Olinares PDB, Chait BT, Waldor MK, Jeruzalmi D.

Nucleic Acids Res. 2017 Apr 20;45(7):3724-3737. doi: 10.1093/nar/gkw1288.

7.

Revealing Higher Order Protein Structure Using Mass Spectrometry.

Chait BT, Cadene M, Olinares PD, Rout MP, Shi Y.

J Am Soc Mass Spectrom. 2016 Jun;27(6):952-65. doi: 10.1007/s13361-016-1385-1. Epub 2016 Apr 14.

8.

A Robust Workflow for Native Mass Spectrometric Analysis of Affinity-Isolated Endogenous Protein Assemblies.

Olinares PD, Dunn AD, Padovan JC, Fernandez-Martinez J, Rout MP, Chait BT.

Anal Chem. 2016 Mar 1;88(5):2799-807. doi: 10.1021/acs.analchem.5b04477. Epub 2016 Feb 18.

9.

Structural, functional, and genetic analyses of the actinobacterial transcription factor RbpA.

Hubin EA, Tabib-Salazar A, Humphrey LJ, Flack JE, Olinares PD, Darst SA, Campbell EA, Paget MS.

Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7171-6. doi: 10.1073/pnas.1504942112. Epub 2015 May 26.

10.

Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis.

Kim J, Olinares PD, Oh SH, Ghisaura S, Poliakov A, Ponnala L, van Wijk KJ.

Plant Physiol. 2013 May;162(1):157-79. doi: 10.1104/pp.113.215699. Epub 2013 Apr 2.

11.

Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.

Huang M, Friso G, Nishimura K, Qu X, Olinares PD, Majeran W, Sun Q, van Wijk KJ.

J Proteome Res. 2013 Jan 4;12(1):491-504. doi: 10.1021/pr300952g. Epub 2012 Dec 12.

PMID:
23198870
12.
13.

Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis.

Olinares PD, Kim J, Davis JI, van Wijk KJ.

Plant Cell. 2011 Jun;23(6):2348-61. doi: 10.1105/tpc.111.086454. Epub 2011 Jun 28.

14.

A bayesian mixture model for comparative spectral count data in shotgun proteomics.

Booth JG, Eilertson KE, Olinares PD, Yu H.

Mol Cell Proteomics. 2011 Aug;10(8):M110.007203. doi: 10.1074/mcp.M110.007203. Epub 2011 May 20.

15.

The Clp protease system; a central component of the chloroplast protease network.

Olinares PD, Kim J, van Wijk KJ.

Biochim Biophys Acta. 2011 Aug;1807(8):999-1011. doi: 10.1016/j.bbabio.2010.12.003. Epub 2010 Dec 15. Review.

16.

Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Olinares PD, Ponnala L, van Wijk KJ.

Mol Cell Proteomics. 2010 Jul;9(7):1594-615. doi: 10.1074/mcp.M000038-MCP201. Epub 2010 Apr 26.

17.

Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.

Kim J, Rudella A, Ramirez Rodriguez V, Zybailov B, Olinares PD, van Wijk KJ.

Plant Cell. 2009 Jun;21(6):1669-92. doi: 10.1105/tpc.108.063784. Epub 2009 Jun 12.

18.

PPDB, the Plant Proteomics Database at Cornell.

Sun Q, Zybailov B, Majeran W, Friso G, Olinares PD, van Wijk KJ.

Nucleic Acids Res. 2009 Jan;37(Database issue):D969-74. doi: 10.1093/nar/gkn654. Epub 2008 Oct 2.

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