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Items: 1 to 50 of 79

1.

Strand-Specific Dual RNA Sequencing of Bronchial Epithelial Cells Infected with Influenza A/H3N2 Viruses Reveals Splicing of Gene Segment 6 and Novel Host-Virus Interactions.

Fabozzi G, Oler AJ, Liu P, Chen Y, Mindaye S, Dolan MA, Kenney H, Gucek M, Zhu J, Rabin RL, Subbarao K.

J Virol. 2018 Aug 16;92(17). pii: e00518-18. doi: 10.1128/JVI.00518-18. Print 2018 Sep 1.

PMID:
29976658
2.

Correction: Influenza A virus hemagglutinin glycosylation compensates for antibody escape fitness costs.

Kosik I, Ince WL, Gentles LE, Oler AJ, Kosikova M, Angel M, Magadán JG, Xie H, Brooke CB, Yewdell JW.

PLoS Pathog. 2018 Jun 20;14(6):e1007141. doi: 10.1371/journal.ppat.1007141. eCollection 2018 Jun.

3.

Aspergillosis, eosinophilic esophagitis, and allergic rhinitis in signal transducer and activator of transcription 3 haploinsufficiency.

Natarajan M, Hsu AP, Weinreich MA, Zhang Y, Niemela JE, Butman JA, Pittaluga S, Sugui J, Collar AL, Lim JK, Zangeneh T, Carr T, Oler AJ, Similuk M, Rosen LB, Desai JV, Freeman AF, Holland SM, Kwon-Chung KJ, Milner JD, Lionakis MS.

J Allergy Clin Immunol. 2018 May 24. pii: S0091-6749(18)30764-4. doi: 10.1016/j.jaci.2018.05.009. [Epub ahead of print] No abstract available.

PMID:
29803798
4.

The effect of selected components of milk and ripening time on the development of the hardness and melting properties of cheese.

Młynek K, Oler A, Zielińska K, Tkaczuk J, Zawadzka W.

Acta Sci Pol Technol Aliment. 2018 Apr-Jun;17(2):133-140. doi: 10.17306/J.AFS.0549.

PMID:
29803215
5.

Bcl11b, a novel GATA3-interacting protein, suppresses Th1 while limiting Th2 cell differentiation.

Fang D, Cui K, Hu G, Gurram RK, Zhong C, Oler AJ, Yagi R, Zhao M, Sharma S, Liu P, Sun B, Zhao K, Zhu J.

J Exp Med. 2018 May 7;215(5):1449-1462. doi: 10.1084/jem.20171127. Epub 2018 Mar 7.

PMID:
29514917
6.

Loss-of-function CARD8 mutation causes NLRP3 inflammasome activation and Crohn's disease.

Mao L, Kitani A, Similuk M, Oler AJ, Albenberg L, Kelsen J, Aktay A, Quezado M, Yao M, Montgomery-Recht K, Fuss IJ, Strober W.

J Clin Invest. 2018 May 1;128(5):1793-1806. doi: 10.1172/JCI98642. Epub 2018 Mar 26.

7.

Influenza A virus hemagglutinin glycosylation compensates for antibody escape fitness costs.

Kosik I, Ince WL, Gentles LE, Oler AJ, Kosikova M, Angel M, Magadán JG, Xie H, Brooke CB, Yewdell JW.

PLoS Pathog. 2018 Jan 18;14(1):e1006796. doi: 10.1371/journal.ppat.1006796. eCollection 2018 Jan. Erratum in: PLoS Pathog. 2018 Jun 20;14(6):e1007141.

8.

Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis.

Weber N, Liou D, Dommer J, MacMenamin P, Quiñones M, Misner I, Oler AJ, Wan J, Kim L, Coakley McCarthy M, Ezeji S, Noble K, Hurt DE.

Bioinformatics. 2018 Apr 15;34(8):1411-1413. doi: 10.1093/bioinformatics/btx617.

PMID:
29028892
9.

Recombinant Origins of Pathogenic and Nonpathogenic Mouse Gammaretroviruses with Polytropic Host Range.

Bamunusinghe D, Liu Q, Plishka R, Dolan MA, Skorski M, Oler AJ, Yedavalli VRK, Buckler-White A, Hartley JW, Kozak CA.

J Virol. 2017 Oct 13;91(21). pii: e00855-17. doi: 10.1128/JVI.00855-17. Print 2017 Nov 1.

10.

Recurrent rhinovirus infections in a child with inherited MDA5 deficiency.

Lamborn IT, Jing H, Zhang Y, Drutman SB, Abbott JK, Munir S, Bade S, Murdock HM, Santos CP, Brock LG, Masutani E, Fordjour EY, McElwee JJ, Hughes JD, Nichols DP, Belkadi A, Oler AJ, Happel CS, Matthews HF, Abel L, Collins PL, Subbarao K, Gelfand EW, Ciancanelli MJ, Casanova JL, Su HC.

J Exp Med. 2017 Jul 3;214(7):1949-1972. doi: 10.1084/jem.20161759. Epub 2017 Jun 12.

11.

Prospective study of DNA methylation at chromosome 8q24 in peripheral blood and prostate cancer risk.

Barry KH, Moore LE, Sampson JN, Koutros S, Yan L, Meyer A, Reddy M, Oler AJ, Cook MB, Fraumeni JF Jr, Yeager M, Amundadottir LT, Berndt SI.

Br J Cancer. 2017 May 23;116(11):1470-1479. doi: 10.1038/bjc.2017.104. Epub 2017 May 2.

12.

Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus.

Wollenberg KR, Desjardins CA, Zalutskaya A, Slodovnikova V, Oler AJ, Quiñones M, Abeel T, Chapman SB, Tartakovsky M, Gabrielian A, Hoffner S, Skrahin A, Birren BW, Rosenthal A, Skrahina A, Earl AM.

J Clin Microbiol. 2017 Feb;55(2):457-469. doi: 10.1128/JCM.02116-16. Epub 2016 Nov 30.

13.

Elevated basal serum tryptase identifies a multisystem disorder associated with increased TPSAB1 copy number.

Lyons JJ, Yu X, Hughes JD, Le QT, Jamil A, Bai Y, Ho N, Zhao M, Liu Y, O'Connell MP, Trivedi NN, Nelson C, DiMaggio T, Jones N, Matthews H, Lewis KL, Oler AJ, Carlson RJ, Arkwright PD, Hong C, Agama S, Wilson TM, Tucker S, Zhang Y, McElwee JJ, Pao M, Glover SC, Rothenberg ME, Hohman RJ, Stone KD, Caughey GH, Heller T, Metcalfe DD, Biesecker LG, Schwartz LB, Milner JD.

Nat Genet. 2016 Dec;48(12):1564-1569. doi: 10.1038/ng.3696. Epub 2016 Oct 17.

14.

Selective repression of SINE transcription by RNA polymerase III.

Varshney D, Vavrova-Anderson J, Oler AJ, Cairns BR, White RJ.

Mob Genet Elements. 2015 Sep 23;5(6):86-91. eCollection 2015 Nov-Dec.

15.

Sequence Diversity, Intersubgroup Relationships, and Origins of the Mouse Leukemia Gammaretroviruses of Laboratory and Wild Mice.

Bamunusinghe D, Naghashfar Z, Buckler-White A, Plishka R, Baliji S, Liu Q, Kassner J, Oler AJ, Hartley J, Kozak CA.

J Virol. 2016 Mar 28;90(8):4186-98. doi: 10.1128/JVI.03186-15. Print 2016 Apr.

16.

Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples.

Barb JJ, Oler AJ, Kim HS, Chalmers N, Wallen GR, Cashion A, Munson PJ, Ames NJ.

PLoS One. 2016 Feb 1;11(2):e0148047. doi: 10.1371/journal.pone.0148047. eCollection 2016.

17.

Identification of the Bile Acid Transporter Slco1a6 as a Candidate Gene That Broadly Affects Gene Expression in Mouse Pancreatic Islets.

Tian J, Keller MP, Oler AT, Rabaglia ME, Schueler KL, Stapleton DS, Broman AT, Zhao W, Kendziorski C, Yandell BS, Hagenbuch B, Broman KW, Attie AD.

Genetics. 2015 Nov;201(3):1253-62. doi: 10.1534/genetics.115.179432. Epub 2015 Sep 18.

18.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.

19.

Pulmonary Nontuberculous Mycobacterial Infection. A Multisystem, Multigenic Disease.

Szymanski EP, Leung JM, Fowler CJ, Haney C, Hsu AP, Chen F, Duggal P, Oler AJ, McCormack R, Podack E, Drummond RA, Lionakis MS, Browne SK, Prevots DR, Knowles M, Cutting G, Liu X, Devine SE, Fraser CM, Tettelin H, Olivier KN, Holland SM.

Am J Respir Crit Care Med. 2015 Sep 1;192(5):618-28. doi: 10.1164/rccm.201502-0387OC.

20.

SINE transcription by RNA polymerase III is suppressed by histone methylation but not by DNA methylation.

Varshney D, Vavrova-Anderson J, Oler AJ, Cowling VH, Cairns BR, White RJ.

Nat Commun. 2015 Mar 23;6:6569. doi: 10.1038/ncomms7569.

21.

Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses.

Golosova O, Henderson R, Vaskin Y, Gabrielian A, Grekhov G, Nagarajan V, Oler AJ, Quiñones M, Hurt D, Fursov M, Huyen Y.

PeerJ. 2014 Nov 4;2:e644. doi: 10.7717/peerj.644. eCollection 2014.

22.

DNA methylation levels at chromosome 8q24 in peripheral blood are associated with 8q24 cancer susceptibility loci.

Barry KH, Moore LE, Sampson J, Yan L, Meyer A, Oler AJ, Chung CC, Wang Z, Yeager M, Amundadottir L, Berndt SI.

Cancer Prev Res (Phila). 2014 Dec;7(12):1282-92. doi: 10.1158/1940-6207.CAPR-14-0132. Epub 2014 Oct 14.

23.

SORCS1 is necessary for normal insulin secretory granule biogenesis in metabolically stressed β cells.

Kebede MA, Oler AT, Gregg T, Balloon AJ, Johnson A, Mitok K, Rabaglia M, Schueler K, Stapleton D, Thorstenson C, Wrighton L, Floyd BJ, Richards O, Raines S, Eliceiri K, Seidah NG, Rhodes C, Keller MP, Coon JL, Audhya A, Attie AD.

J Clin Invest. 2014 Oct;124(10):4240-56. doi: 10.1172/JCI74072. Epub 2014 Aug 26.

24.

Endogenous retrovirus induces leukemia in a xenograft mouse model for primary myelofibrosis.

Triviai I, Ziegler M, Bergholz U, Oler AJ, Stübig T, Prassolov V, Fehse B, Kozak CA, Kröger N, Stocking C.

Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):8595-600. doi: 10.1073/pnas.1401215111. Epub 2014 May 27.

25.

Reintroducing domesticated wild mice to sociality induces adaptive transgenerational effects on MUP expression.

Nelson AC, Cauceglia JW, Merkley SD, Youngson NA, Oler AJ, Nelson RJ, Cairns BR, Whitelaw E, Potts WK.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19848-53. doi: 10.1073/pnas.1310427110. Epub 2013 Nov 18.

26.

Endogenous gammaretrovirus acquisition in Mus musculus subspecies carrying functional variants of the XPR1 virus receptor.

Bamunusinghe D, Liu Q, Lu X, Oler A, Kozak CA.

J Virol. 2013 Sep;87(17):9845-55. doi: 10.1128/JVI.01264-13. Epub 2013 Jul 3.

27.

Biochemical and hormonal characteristics of peripheral blood in bulls in relation to genotype.

Głowińska B, Oler A.

Folia Biol (Krakow). 2013;61(1-2):73-7.

PMID:
23767296
28.

The transcription factor T-bet is induced by multiple pathways and prevents an endogenous Th2 cell program during Th1 cell responses.

Zhu J, Jankovic D, Oler AJ, Wei G, Sharma S, Hu G, Guo L, Yagi R, Yamane H, Punkosdy G, Feigenbaum L, Zhao K, Paul WE.

Immunity. 2012 Oct 19;37(4):660-73. doi: 10.1016/j.immuni.2012.09.007. Epub 2012 Oct 4.

29.

Alu expression in human cell lines and their retrotranspositional potential.

Oler AJ, Traina-Dorge S, Derbes RS, Canella D, Cairns BR, Roy-Engel AM.

Mob DNA. 2012 Jun 20;3(1):11. doi: 10.1186/1759-8753-3-11.

30.

Tsc2, a positional candidate gene underlying a quantitative trait locus for hepatic steatosis.

Wang CY, Stapleton DS, Schueler KL, Rabaglia ME, Oler AT, Keller MP, Kendziorski CM, Broman KW, Yandell BS, Schadt EE, Attie AD.

J Lipid Res. 2012 Aug;53(8):1493-501. doi: 10.1194/jlr.M025239. Epub 2012 May 23.

31.

PP4 dephosphorylates Maf1 to couple multiple stress conditions to RNA polymerase III repression.

Oler AJ, Cairns BR.

EMBO J. 2012 Mar 21;31(6):1440-52. doi: 10.1038/emboj.2011.501. Epub 2012 Feb 14.

32.

Positional cloning of a type 2 diabetes quantitative trait locus; tomosyn-2, a negative regulator of insulin secretion.

Bhatnagar S, Oler AT, Rabaglia ME, Stapleton DS, Schueler KL, Truchan NA, Worzella SL, Stoehr JP, Clee SM, Yandell BS, Keller MP, Thurmond DC, Attie AD.

PLoS Genet. 2011 Oct;7(10):e1002323. doi: 10.1371/journal.pgen.1002323. Epub 2011 Oct 6.

33.

Loss of PDGF-B activity increases hepatic vascular permeability and enhances insulin sensitivity.

Raines SM, Richards OC, Schneider LR, Schueler KL, Rabaglia ME, Oler AT, Stapleton DS, Genové G, Dawson JA, Betsholtz C, Attie AD.

Am J Physiol Endocrinol Metab. 2011 Sep;301(3):E517-26. doi: 10.1152/ajpendo.00241.2011. Epub 2011 Jun 14.

34.

Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes.

Rowley JW, Oler AJ, Tolley ND, Hunter BN, Low EN, Nix DA, Yost CC, Zimmerman GA, Weyrich AS.

Blood. 2011 Oct 6;118(14):e101-11. doi: 10.1182/blood-2011-03-339705. Epub 2011 May 19. Erratum in: Blood. 2014 Jun 12;123(24):3843.

35.

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors.

Oler AJ, Alla RK, Roberts DN, Wong A, Hollenhorst PC, Chandler KJ, Cassiday PA, Nelson CA, Hagedorn CH, Graves BJ, Cairns BR.

Nat Struct Mol Biol. 2010 May;17(5):620-8. doi: 10.1038/nsmb.1801. Epub 2010 Apr 25.

36.

Obesity and genetics regulate microRNAs in islets, liver, and adipose of diabetic mice.

Zhao E, Keller MP, Rabaglia ME, Oler AT, Stapleton DS, Schueler KL, Neto EC, Moon JY, Wang P, Wang IM, Lum PY, Ivanovska I, Cleary M, Greenawalt D, Tsang J, Choi YJ, Kleinhanz R, Shang J, Zhou YP, Howard AD, Zhang BB, Kendziorski C, Thornberry NA, Yandell BS, Schadt EE, Attie AD.

Mamm Genome. 2009 Aug;20(8):476-85. doi: 10.1007/s00335-009-9217-2.

37.

A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility.

Keller MP, Choi Y, Wang P, Davis DB, Rabaglia ME, Oler AT, Stapleton DS, Argmann C, Schueler KL, Edwards S, Steinberg HA, Chaibub Neto E, Kleinhanz R, Turner S, Hellerstein MK, Schadt EE, Yandell BS, Kendziorski C, Attie AD.

Genome Res. 2008 May;18(5):706-16. doi: 10.1101/gr.074914.107. Epub 2008 Mar 17.

38.

A rapid, microplate SNP genotype assay for the leptinob allele.

Oler AT, Attie AD.

J Lipid Res. 2008 May;49(5):1126-9. doi: 10.1194/jlr.D800002-JLR200. Epub 2008 Feb 13.

39.

Regulation of ApoB secretion by the low density lipoprotein receptor requires exit from the endoplasmic reticulum and interaction with ApoE or ApoB.

Blasiole DA, Oler AT, Attie AD.

J Biol Chem. 2008 Apr 25;283(17):11374-81. doi: 10.1074/jbc.M710457200. Epub 2008 Feb 13.

40.

Abdominal obesity in BTBR male mice is associated with peripheral but not hepatic insulin resistance.

Flowers JB, Oler AT, Nadler ST, Choi Y, Schueler KL, Yandell BS, Kendziorski CM, Attie AD.

Am J Physiol Endocrinol Metab. 2007 Mar;292(3):E936-45. Epub 2006 Nov 28.

41.

Cholestasis and hypercholesterolemia in SCD1-deficient mice fed a low-fat, high-carbohydrate diet.

Flowers MT, Groen AK, Oler AT, Keller MP, Choi Y, Schueler KL, Richards OC, Lan H, Miyazaki M, Kuipers F, Kendziorski CM, Ntambi JM, Attie AD.

J Lipid Res. 2006 Dec;47(12):2668-80. Epub 2006 Sep 27.

42.

Beneficial effect of hyperbaric oxygen pretreatment on lipopolysaccharide-induced shock in rats.

Pedoto A, Nandi J, Yang ZJ, Wang J, Bosco G, Oler A, Hakim TS, Camporesi EM.

Clin Exp Pharmacol Physiol. 2003 Jul;30(7):482-8.

PMID:
12823263
43.

Role of nitric oxide in acidosis-induced intestinal injury in anesthetized rats.

Pedoto A, Nandi J, Oler A, Camporesi EM, Hakim TS, Levine RA.

J Lab Clin Med. 2001 Oct;138(4):270-6.

PMID:
11574821
44.

Comparison of early feeding pattern dynamics in female and male rats after reversible ventromedial nucleus of hypothalamus block.

Varma M, Laviano A, Meguid MM, Gleason JR, Yang ZJ, Oler A.

J Investig Med. 2000 Nov;48(6):417-26.

PMID:
11094864
45.

Hypophysial and meningeal melanocytes in the Zucker rat.

Fetissov SO, Barcza MA, Meguid MM, Oler A.

Pigment Cell Res. 1999 Oct;12(5):323-30.

PMID:
10541042
46.

Infusion of nicotine into the LHA enhances dopamine and 5-HT release and suppresses food intake.

Yang ZJ, Blaha V, Meguid MM, Oler A, Miyata G.

Pharmacol Biochem Behav. 1999 Sep;64(1):155-9.

PMID:
10495010
47.

Dietary nucleotides augment dextran sulfate sodium-induced distal colitis in rats.

Sukumar P, Loo A, Adolphe R, Nandi J, Oler A, Levine RA.

J Nutr. 1999 Jul;129(7):1377-81.

PMID:
10395601
48.
49.

Interleukin-1alpha injection into ventromedial hypothalamic nucleus of normal rats depresses food intake and increases release of dopamine and serotonin.

Yang ZJ, Blaha V, Meguid MM, Laviano A, Oler A, Zadak Z.

Pharmacol Biochem Behav. 1999 Jan;62(1):61-5.

PMID:
9972846
50.

Acidosis stimulates nitric oxide production and lung damage in rats.

Pedoto A, Caruso JE, Nandi J, Oler A, Hoffmann SP, Tassiopoulos AK, McGraw DJ, Camporesi EM, Hakim TS.

Am J Respir Crit Care Med. 1999 Feb;159(2):397-402.

PMID:
9927349

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