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Items: 12

1.

Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains.

Shrivastava S, Puri V, Dilley KA, Ngouajio E, Shifflett J, Oldfield LM, Fedorova NB, Hu L, Williams T, Durbin A, Amedeo P, Rashid S, Shabman RS, Pickett BE.

Sci Rep. 2018 Oct 26;8(1):15843. doi: 10.1038/s41598-018-34147-7.

2.

Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells.

Brown DM, Hixon AM, Oldfield LM, Zhang Y, Novotny M, Wang W, Das SR, Shabman RS, Tyler KL, Scheuermann RH.

MBio. 2018 Oct 16;9(5). pii: e01954-18. doi: 10.1128/mBio.01954-18.

3.

Rapid and efficient in vitro excision of BAC sequences from herpesvirus genomes using Cre-mediated recombination.

Grzesik P, Ko N, Oldfield LM, Vashee S, Desai PJ.

J Virol Methods. 2018 Nov;261:67-70. doi: 10.1016/j.jviromet.2018.08.006. Epub 2018 Aug 6.

PMID:
30092252
4.

Sequences of Zika Virus Genomes from a Pediatric Cohort in Nicaragua.

Oldfield LM, Fedorova N, Puri V, Shrivastava S, Amedeo P, Durbin A, Rocchi I, Williams T, Shabman RS, Tan GS, Balmaseda A, Kuan G, Saborio S, Gordon A, Harris E, Pickett BE.

Genome Announc. 2018 Jun 14;6(24). pii: e00498-18. doi: 10.1128/genomeA.00498-18.

5.

Whole-Genome Sequences of Zika Virus FLR Strains after Passage in Vero or C6/36 Cells.

Moser LA, Oldfield LM, Fedorova N, Puri V, Shrivastava S, Amedeo P, Isom R, Hu L, Durbin A, Rocchi I, Williams T, Tan GS, Shabman RS, Bernard KA, Pickett BE.

Genome Announc. 2018 Jan 25;6(4). pii: e01528-17. doi: 10.1128/genomeA.01528-17.

6.

Genome-wide engineering of an infectious clone of herpes simplex virus type 1 using synthetic genomics assembly methods.

Oldfield LM, Grzesik P, Voorhies AA, Alperovich N, MacMath D, Najera CD, Chandra DS, Prasad S, Noskov VN, Montague MG, Friedman RM, Desai PJ, Vashee S.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8885-E8894. doi: 10.1073/pnas.1700534114. Epub 2017 Sep 19.

7.

The Human Microbiome and Cancer.

Rajagopala SV, Vashee S, Oldfield LM, Suzuki Y, Venter JC, Telenti A, Nelson KE.

Cancer Prev Res (Phila). 2017 Apr;10(4):226-234. doi: 10.1158/1940-6207.CAPR-16-0249. Epub 2017 Jan 17. Review.

8.

Efficient size-independent chromosome delivery from yeast to cultured cell lines.

Brown DM, Chan YA, Desai PJ, Grzesik P, Oldfield LM, Vashee S, Way JC, Silver PA, Glass JI.

Nucleic Acids Res. 2017 Apr 20;45(7):e50. doi: 10.1093/nar/gkw1252.

9.

An Unusual Phage Repressor Encoded by Mycobacteriophage BPs.

Villanueva VM, Oldfield LM, Hatfull GF.

PLoS One. 2015 Sep 2;10(9):e0137187. doi: 10.1371/journal.pone.0137187. eCollection 2015.

10.

Mutational analysis of the mycobacteriophage BPs promoter PR reveals context-dependent sequences for mycobacterial gene expression.

Oldfield LM, Hatfull GF.

J Bacteriol. 2014 Oct;196(20):3589-97. doi: 10.1128/JB.01801-14. Epub 2014 Aug 4.

11.

Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches.

Broussard GW, Oldfield LM, Villanueva VM, Lunt BL, Shine EE, Hatfull GF.

Mol Cell. 2013 Jan 24;49(2):237-48. doi: 10.1016/j.molcel.2012.11.012. Epub 2012 Dec 13.

12.

BRED: a simple and powerful tool for constructing mutant and recombinant bacteriophage genomes.

Marinelli LJ, Piuri M, Swigonová Z, Balachandran A, Oldfield LM, van Kessel JC, Hatfull GF.

PLoS One. 2008;3(12):e3957. doi: 10.1371/journal.pone.0003957. Epub 2008 Dec 17.

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