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Items: 48

1.

Asymmetrical flow field-flow fractionation in purification of an enveloped bacteriophage ϕ6.

Lampi M, Oksanen HM, Meier F, Moldenhauer E, Poranen MM, Bamford DH, Eskelin K.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Sep 15;1095:251-257. doi: 10.1016/j.jchromb.2018.07.008. Epub 2018 Jul 10.

PMID:
30098552
2.

Outcomes of growing rod surgery for severe compared with moderate early-onset scoliosis.

Helenius IJ, Oksanen HM, McClung A, Pawelek JB, Yazici M, Sponseller PD, Emans JB, Sánchez Pérez-Grueso FJ, Thompson GH, Johnston C, Shah SA, Akbarnia BA.

Bone Joint J. 2018 Jun 1;100-B(6):772-779. doi: 10.1302/0301-620X.100B6.BJJ-2017-1490.R1.

PMID:
29855249
3.

Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta.

Leigh BA, Breitbart M, Oksanen HM, Bamford DH, Dishaw LJ.

Genome Announc. 2018 May 24;6(21). pii: e00368-18. doi: 10.1128/genomeA.00368-18.

4.

Extremely halophilic pleomorphic archaeal virus HRPV9 extends the diversity of pleolipoviruses with integrases.

Atanasova NS, Demina TA, Krishnam Rajan Shanthi SNV, Oksanen HM, Bamford DH.

Res Microbiol. 2018 May 14. pii: S0923-2508(18)30060-3. doi: 10.1016/j.resmic.2018.04.004. [Epub ahead of print]

5.

Membrane-containing virus particles exhibit the mechanics of a composite material for genome protection.

Azinas S, Bano F, Torca I, Bamford DH, Schwartz GA, Esnaola J, Oksanen HM, Richter RP, Abrescia NG.

Nanoscale. 2018 Apr 26;10(16):7769-7779. doi: 10.1039/c8nr00196k.

6.

The Unexplored Diversity of Pleolipoviruses: The Surprising Case of Two Viruses with Identical Major Structural Modules.

Atanasova NS, Heiniö CH, Demina TA, Bamford DH, Oksanen HM.

Genes (Basel). 2018 Feb 28;9(3). pii: E131. doi: 10.3390/genes9030131.

7.

The first known virus isolates from Antarctic sea ice have complex infection patterns.

Luhtanen AM, Eronen-Rasimus E, Oksanen HM, Tison JL, Delille B, Dieckmann GS, Rintala JM, Bamford DH.

FEMS Microbiol Ecol. 2018 Apr 1;94(4). doi: 10.1093/femsec/fiy028.

PMID:
29481638
8.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
9.

ICTV Virus Taxonomy Profile: Pleolipoviridae.

Bamford DH, Pietilä MK, Roine E, Atanasova NS, Dienstbier A, Oksanen HM, Ictv Report Consortium.

J Gen Virol. 2017 Dec;98(12):2916-2917. doi: 10.1099/jgv.0.000972. Epub 2017 Nov 10.

10.

Halophilic viruses with varying biochemical and biophysical properties are amenable to purification with asymmetrical flow field-flow fractionation.

Eskelin K, Lampi M, Meier F, Moldenhauer E, Bamford DH, Oksanen HM.

Extremophiles. 2017 Nov;21(6):1119-1132. doi: 10.1007/s00792-017-0963-x. Epub 2017 Oct 10.

PMID:
29019077
11.

ICTV Virus Taxonomy Profile: Corticoviridae.

Oksanen HM, Ictv Report Consortium.

J Gen Virol. 2017 May;98(5):888-889. doi: 10.1099/jgv.0.000795.

12.

HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae.

Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM.

Viruses. 2017 Feb 18;9(2). pii: E32. doi: 10.3390/v9020032. Review.

13.

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.

Adriaenssens EM, Krupovic M, Knezevic P, Ackermann HW, Barylski J, Brister JR, Clokie MR, Duffy S, Dutilh BE, Edwards RA, Enault F, Jang HB, Klumpp J, Kropinski AM, Lavigne R, Poranen MM, Prangishvili D, Rumnieks J, Sullivan MB, Wittmann J, Oksanen HM, Gillis A, Kuhn JH.

Arch Virol. 2017 Apr;162(4):1153-1157. doi: 10.1007/s00705-016-3173-4. Epub 2016 Dec 31. No abstract available.

PMID:
28040838
14.

Membrane-assisted viral DNA ejection.

Santos-Pérez I, Oksanen HM, Bamford DH, Goñi FM, Reguera D, Abrescia NGA.

Biochim Biophys Acta Gen Subj. 2017 Mar;1861(3):664-672. doi: 10.1016/j.bbagen.2016.12.013. Epub 2016 Dec 16.

PMID:
27993658
15.

Asymmetric flow field flow fractionation methods for virus purification.

Eskelin K, Lampi M, Meier F, Moldenhauer E, Bamford DH, Oksanen HM.

J Chromatogr A. 2016 Oct 21;1469:108-119. doi: 10.1016/j.chroma.2016.09.055. Epub 2016 Sep 28.

PMID:
27697294
16.

Vesicle-like virion of Haloarcula hispanica pleomorphic virus 3 preserves high infectivity in saturated salt.

Demina TA, Atanasova NS, Pietilä MK, Oksanen HM, Bamford DH.

Virology. 2016 Dec;499:40-51. doi: 10.1016/j.virol.2016.09.002. Epub 2016 Sep 12.

17.

Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments.

Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM.

MBio. 2016 Jul 19;7(4). pii: e00699-16. doi: 10.1128/mBio.00699-16.

18.

Virus-host interplay in high salt environments.

Atanasova NS, Bamford DH, Oksanen HM.

Environ Microbiol Rep. 2016 Aug;8(4):431-44. doi: 10.1111/1758-2229.12385. Epub 2016 Apr 28. Review.

PMID:
26929102
19.

Monitoring Physiological Changes in Haloarchaeal Cell during Virus Release.

Svirskaitė J, Oksanen HM, Daugelavičius R, Bamford DH.

Viruses. 2016 Feb 24;8(3):59. doi: 10.3390/v8030059.

20.

K2 killer toxin-induced physiological changes in the yeast Saccharomyces cerevisiae.

Orentaite I, Poranen MM, Oksanen HM, Daugelavicius R, Bamford DH.

FEMS Yeast Res. 2016 Mar;16(2):fow003. doi: 10.1093/femsyr/fow003. Epub 2016 Jan 26.

PMID:
26818855
21.

Buried Alive: Microbes from Ancient Halite.

Jaakkola ST, Ravantti JJ, Oksanen HM, Bamford DH.

Trends Microbiol. 2016 Feb;24(2):148-160. doi: 10.1016/j.tim.2015.12.002. Epub 2016 Jan 13. Review.

PMID:
26796472
22.

The complete genome of a viable archaeum isolated from 123-million-year-old rock salt.

Jaakkola ST, Pfeiffer F, Ravantti JJ, Guo Q, Liu Y, Chen X, Ma H, Yang C, Oksanen HM, Bamford DH.

Environ Microbiol. 2016 Feb;18(2):565-79. doi: 10.1111/1462-2920.13130. Epub 2016 Jan 18.

PMID:
26628271
23.

Pleolipoviridae, a newly proposed family comprising archaeal pleomorphic viruses with single-stranded or double-stranded DNA genomes.

Pietilä MK, Roine E, Sencilo A, Bamford DH, Oksanen HM.

Arch Virol. 2016 Jan;161(1):249-56. doi: 10.1007/s00705-015-2613-x. Epub 2015 Oct 12.

PMID:
26459284
24.

Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Quemin ER, Pietilä MK, Oksanen HM, Forterre P, Rijpstra WI, Schouten S, Bamford DH, Prangishvili D, Krupovic M.

J Virol. 2015 Nov;89(22):11681-91. doi: 10.1128/JVI.02270-15. Epub 2015 Sep 9.

25.

Identification and characterization of SNJ2, the first temperate pleolipovirus integrating into the genome of the SNJ1-lysogenic archaeal strain.

Liu Y, Wang J, Liu Y, Wang Y, Zhang Z, Oksanen HM, Bamford DH, Chen X.

Mol Microbiol. 2015 Dec;98(6):1002-20. doi: 10.1111/mmi.13204. Epub 2015 Sep 25.

26.

Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins.

Gil-Carton D, Jaakkola ST, Charro D, Peralta B, Castaño-Díez D, Oksanen HM, Bamford DH, Abrescia NGA.

Structure. 2015 Oct 6;23(10):1866-1877. doi: 10.1016/j.str.2015.07.015. Epub 2015 Aug 27.

27.

Haloarchaeal virus morphotypes.

Atanasova NS, Bamford DH, Oksanen HM.

Biochimie. 2015 Nov;118:333-43. doi: 10.1016/j.biochi.2015.07.002. Epub 2015 Jul 4.

PMID:
26151345
28.

Haloviruses of archaea, bacteria, and eukaryotes.

Atanasova NS, Oksanen HM, Bamford DH.

Curr Opin Microbiol. 2015 Jun;25:40-8. doi: 10.1016/j.mib.2015.04.001. Epub 2015 Apr 28. Review.

PMID:
25932531
29.

Non-structural proteins P17 and P33 are involved in the assembly of the internal membrane-containing virus PRD1.

Karttunen J, Mäntynen S, Ihalainen TO, Bamford JK, Oksanen HM.

Virology. 2015 Aug;482:225-33. doi: 10.1016/j.virol.2015.03.049. Epub 2015 Apr 14.

30.

Archaeal viruses multiply: temporal screening in a solar saltern.

Atanasova NS, Demina TA, Buivydas A, Bamford DH, Oksanen HM.

Viruses. 2015 Apr 10;7(4):1902-26. doi: 10.3390/v7041902.

31.

Comparison of lipid-containing bacterial and archaeal viruses.

Atanasova NS, Senčilo A, Pietilä MK, Roine E, Oksanen HM, Bamford DH.

Adv Virus Res. 2015;92:1-61. doi: 10.1016/bs.aivir.2014.11.005. Epub 2015 Jan 13. Review.

PMID:
25701885
32.

A structural model of the genome packaging process in a membrane-containing double stranded DNA virus.

Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W.

PLoS Biol. 2014 Dec 16;12(12):e1002024. doi: 10.1371/journal.pbio.1002024. eCollection 2014 Dec.

33.

Halophilic archaea cultivated from surface sterilized middle-late eocene rock salt are polyploid.

Jaakkola ST, Zerulla K, Guo Q, Liu Y, Ma H, Yang C, Bamford DH, Chen X, Soppa J, Oksanen HM.

PLoS One. 2014 Oct 22;9(10):e110533. doi: 10.1371/journal.pone.0110533. eCollection 2014.

34.

Probing protein interactions in the membrane-containing virus PRD1.

Mattila S, Oksanen HM, Bamford JK.

J Gen Virol. 2015 Feb;96(Pt 2):453-62. doi: 10.1099/vir.0.069187-0. Epub 2014 Oct 14.

PMID:
25316797
35.

Archaeal viruses and bacteriophages: comparisons and contrasts.

Pietilä MK, Demina TA, Atanasova NS, Oksanen HM, Bamford DH.

Trends Microbiol. 2014 Jun;22(6):334-44. doi: 10.1016/j.tim.2014.02.007. Epub 2014 Mar 16. Review.

PMID:
24647075
36.

Subcellular localization of bacteriophage PRD1 proteins in Escherichia coli.

Karttunen J, Mäntynen S, Ihalainen TO, Lehtivuori H, Tkachenko NV, Vihinen-Ranta M, Ihalainen JA, Bamford JK, Oksanen HM.

Virus Res. 2014 Jan 22;179:44-52. doi: 10.1016/j.virusres.2013.11.015. Epub 2013 Nov 28.

PMID:
24291253
37.

Mechanism of membranous tunnelling nanotube formation in viral genome delivery.

Peralta B, Gil-Carton D, Castaño-Díez D, Bertin A, Boulogne C, Oksanen HM, Bamford DH, Abrescia NG.

PLoS Biol. 2013 Sep;11(9):e1001667. doi: 10.1371/journal.pbio.1001667. Epub 2013 Sep 24.

38.

Diverse antimicrobial interactions of halophilic archaea and bacteria extend over geographical distances and cross the domain barrier.

Atanasova NS, Pietilä MK, Oksanen HM.

Microbiologyopen. 2013 Oct;2(5):811-25. doi: 10.1002/mbo3.115. Epub 2013 Aug 8.

39.

Combined approaches to study virus structures.

Badia-Martinez D, Oksanen HM, Stuart DI, Abrescia NG.

Subcell Biochem. 2013;68:203-46. doi: 10.1007/978-94-007-6552-8_7. Review.

PMID:
23737053
40.

Snapshot of haloarchaeal tailed virus genomes.

Senčilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW.

RNA Biol. 2013 May;10(5):803-16. doi: 10.4161/rna.24045. Epub 2013 Mar 7.

41.

Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1.

Pietilä MK, Atanasova NS, Oksanen HM, Bamford DH.

Environ Microbiol. 2013 Jun;15(6):1674-86. doi: 10.1111/1462-2920.12030. Epub 2012 Nov 19.

PMID:
23163639
42.

Monolithic ion exchange chromatographic methods for virus purification.

Oksanen HM, Domanska A, Bamford DH.

Virology. 2012 Dec 20;434(2):271-7. doi: 10.1016/j.virol.2012.09.019. Epub 2012 Oct 22.

43.

Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1.

Aalto AP, Bitto D, Ravantti JJ, Bamford DH, Huiskonen JT, Oksanen HM.

Proc Natl Acad Sci U S A. 2012 May 1;109(18):7079-84. doi: 10.1073/pnas.1120174109. Epub 2012 Apr 16.

44.

Virion architecture unifies globally distributed pleolipoviruses infecting halophilic archaea.

Pietilä MK, Atanasova NS, Manole V, Liljeroos L, Butcher SJ, Oksanen HM, Bamford DH.

J Virol. 2012 May;86(9):5067-79. doi: 10.1128/JVI.06915-11. Epub 2012 Feb 22. Erratum in: J Virol. 2012 Jun;86(11):6384.

45.

Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions.

Jaakkola ST, Penttinen RK, Vilén ST, Jalasvuori M, Rönnholm G, Bamford JK, Bamford DH, Oksanen HM.

J Virol. 2012 May;86(9):4734-42. doi: 10.1128/JVI.06666-11. Epub 2012 Feb 22. Erratum in: J Virol. 2012 Jun;86(11):6383.

46.

Global network of specific virus-host interactions in hypersaline environments.

Atanasova NS, Roine E, Oren A, Bamford DH, Oksanen HM.

Environ Microbiol. 2012 Feb;14(2):426-40. doi: 10.1111/j.1462-2920.2011.02603.x. Epub 2011 Oct 17.

PMID:
22003883
47.

The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein.

Abrescia NG, Grimes JM, Oksanen HM, Bamford JK, Bamford DH, Stuart DI.

Acta Crystallogr D Biol Crystallogr. 2011 Mar;67(Pt 3):228-32. doi: 10.1107/S0907444911002277. Epub 2011 Feb 15.

PMID:
21358054
48.

Relationship between occupation and lung cancer as analyzed by age and histologic type.

Sankila RJ, Karjalainen ES, Oksanen HM, Hakulinen TR, Teppo LH.

Cancer. 1990 Apr 1;65(7):1651-6.

PMID:
2155703

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