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Items: 1 to 50 of 61

1.

A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens.

Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P.

MBio. 2016 Sep 27;7(5). pii: e01501-16. doi: 10.1128/mBio.01501-16.

2.

The Phylogeny of Bacillus cereus sensu lato.

Okinaka RT, Keim P.

Microbiol Spectr. 2016 Feb;4(1). doi: 10.1128/microbiolspec.TBS-0012-2012.

PMID:
26999390
3.

Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates.

Spring-Pearson SM, Stone JK, Doyle A, Allender CJ, Okinaka RT, Mayo M, Broomall SM, Hill JM, Karavis MA, Hubbard KS, Insalaco JM, McNew LA, Rosenzweig CN, Gibbons HS, Currie BJ, Wagner DM, Keim P, Tuanyok A.

PLoS One. 2015 Oct 20;10(10):e0140274. doi: 10.1371/journal.pone.0140274. eCollection 2015.

4.

Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain.

Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, Foster JT, Pearson T, Turnbull P, Keim P.

Genome Announc. 2014 Sep 18;2(5). pii: e00853-14. doi: 10.1128/genomeA.00853-14.

5.

Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes.

Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, Abazashvili N, Kekelidze M, Tsanava S, Imnadze P, Ganz HH, Getz WM, Pearson O, Gajer P, Eppinger M, Ravel J, Wagner DM, Okinaka RT, Schupp JM, Keim P, Pearson T.

PLoS One. 2014 Jul 21;9(7):e102651. doi: 10.1371/journal.pone.0102651. eCollection 2014.

6.

Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe.

Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, Vipond R, Foster JT, Bergman NH, Burans J, Pearson T, Brooks T, Keim P.

Emerg Infect Dis. 2012 Aug;18(8):1307-13. doi: 10.3201/eid1808.111343.

7.

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics.

Okinaka RT, Price EP, Wolken SR, Gruendike JM, Chung WK, Pearson T, Xie G, Munk C, Hill KK, Challacombe J, Ivins BE, Schupp JM, Beckstrom-Sternberg SM, Friedlander A, Keim P.

BMC Genomics. 2011 Sep 30;12:477. doi: 10.1186/1471-2164-12-477.

8.

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.

Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P.

BMC Biol. 2009 Nov 18;7:78. doi: 10.1186/1741-7007-7-78.

9.

The genome and variation of Bacillus anthracis.

Keim P, Gruendike JM, Klevytska AM, Schupp JM, Challacombe J, Okinaka R.

Mol Aspects Med. 2009 Dec;30(6):397-405. doi: 10.1016/j.mam.2009.08.005. Epub 2009 Sep 1. Review.

10.

Phylogenetic understanding of clonal populations in an era of whole genome sequencing.

Pearson T, Okinaka RT, Foster JT, Keim P.

Infect Genet Evol. 2009 Sep;9(5):1010-9. doi: 10.1016/j.meegid.2009.05.014. Epub 2009 May 27. Review.

PMID:
19477301
11.

Bacillus anthracis in China and its relationship to worldwide lineages.

Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, Keim P.

BMC Microbiol. 2009 Apr 15;9:71. doi: 10.1186/1471-2180-9-71.

12.

Pre-Columbian origins for North American anthrax.

Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Chung WK, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, Keim P.

PLoS One. 2009;4(3):e4813. doi: 10.1371/journal.pone.0004813. Epub 2009 Mar 13. Erratum in: PLoS One.2009;4(5):10.1371/annotation/9e8af820-8037-4f98-86b3-6581e16c2ae6. Jiang, Lingxia [added]; Gajer, Pawel [added]; Trim, Carla P [corrected to Trim, Carla B].

13.

Texas isolates closely related to Bacillus anthracis Ames.

Kenefic LJ, Pearson T, Okinaka RT, Chung WK, Max T, Trim CP, Beaudry JA, Schupp JM, Van Ert MN, Marston CK, Gutierrez K, Swinford AK, Hoffmaster AR, Keim P.

Emerg Infect Dis. 2008 Sep;14(9):1494-6. doi: 10.3201/eid1409.080076. No abstract available. Erratum in: Emerg Infect Dis. 2008 Nov;14(11):1825. Trim, Carla P [added]; Beaudry, Jodi A [added]; Schupp, James M [added].

14.

Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax).

Keim P, Pearson T, Okinaka R.

Anal Chem. 2008 Jul 1;80(13):4791-9. Review. No abstract available.

PMID:
18609763
15.

Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue.

Okinaka RT, Henrie M, Hill KK, Lowery KS, Van Ert M, Pearson T, Schupp J, Kenefic L, Beaudry J, Hofstadler SA, Jackson PJ, Keim P.

Emerg Infect Dis. 2008 Apr;14(4):653-6. doi: 10.3201/eid1404.070984.

16.

Differentiation of Clostridium botulinum serotype A strains by multiple-locus variable-number tandem-repeat analysis.

Macdonald TE, Helma CH, Ticknor LO, Jackson PJ, Okinaka RT, Smith LA, Smith TJ, Hill KK.

Appl Environ Microbiol. 2008 Feb;74(3):875-82. Epub 2007 Dec 14.

17.

Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades.

Foster JT, Okinaka RT, Svensson R, Shaw K, De BK, Robison RA, Probert WS, Kenefic LJ, Brown WD, Keim P.

J Clin Microbiol. 2008 Jan;46(1):296-301. Epub 2007 Nov 21. Erratum in: J Clin Microbiol. 2008 Jul;46(7):2474.

18.

Evaluating Burkholderia pseudomallei Bip proteins as vaccines and Bip antibodies as detection agents.

Druar C, Yu F, Barnes JL, Okinaka RT, Chantratita N, Beg S, Stratilo CW, Olive AJ, Soltes G, Russell ML, Limmathurotsakul D, Norton RE, Ni SX, Picking WD, Jackson PJ, Stewart DI, Tsvetnitsky V, Picking WL, Cherwonogrodzky JW, Ketheesan N, Peacock SJ, Wiersma EJ.

FEMS Immunol Med Microbiol. 2008 Jan;52(1):78-87. Epub 2007 Nov 11.

19.

Global genetic population structure of Bacillus anthracis.

Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, Coker PR, Smith KL, Wang B, Kenefic LJ, Fraser-Liggett CM, Wagner DM, Keim P.

PLoS One. 2007 May 23;2(5):e461.

20.

The complete genome sequence of Bacillus thuringiensis Al Hakam.

Challacombe JF, Altherr MR, Xie G, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, Glavina T, Goodwin LA, Green LD, Han CS, Hill KK, Hitchcock P, Jackson PJ, Keim P, Kewalramani AR, Longmire J, Lucas S, Malfatti S, Martinez D, McMurry K, Meincke LJ, Misra M, Moseman BL, Mundt M, Munk AC, Okinaka RT, Parson-Quintana B, Reilly LP, Richardson P, Robinson DL, Saunders E, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Ticknor LO, Wills PL, Gilna P, Brettin TS.

J Bacteriol. 2007 May;189(9):3680-1. Epub 2007 Mar 2.

21.

Anthrax, but not Bacillus anthracis?

Okinaka R, Pearson T, Keim P.

PLoS Pathog. 2006 Nov;2(11):e122. No abstract available.

22.

Genetic diversity among Botulinum Neurotoxin-producing clostridial strains.

Hill KK, Smith TJ, Helma CH, Ticknor LO, Foley BT, Svensson RT, Brown JL, Johnson EA, Smith LA, Okinaka RT, Jackson PJ, Marks JD.

J Bacteriol. 2007 Feb;189(3):818-32. Epub 2006 Nov 17.

23.

Characterization of Bacillus cereus isolates associated with fatal pneumonias: strains are closely related to Bacillus anthracis and harbor B. anthracis virulence genes.

Hoffmaster AR, Hill KK, Gee JE, Marston CK, De BK, Popovic T, Sue D, Wilkins PP, Avashia SB, Drumgoole R, Helma CH, Ticknor LO, Okinaka RT, Jackson PJ.

J Clin Microbiol. 2006 Sep;44(9):3352-60.

24.

Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis.

Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, Glavina T, Goodwin LA, Green LD, Hill KK, Hitchcock P, Jackson PJ, Keim P, Kewalramani AR, Longmire J, Lucas S, Malfatti S, McMurry K, Meincke LJ, Misra M, Moseman BL, Mundt M, Munk AC, Okinaka RT, Parson-Quintana B, Reilly LP, Richardson P, Robinson DL, Rubin E, Saunders E, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Ticknor LO, Wills PL, Brettin TS, Gilna P.

J Bacteriol. 2006 May;188(9):3382-90. Erratum in: J Bacteriol. 2006 Nov;188(21):7711. Brown, Nancy [added]; Green, Lance D [added].

25.

Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei.

U'Ren JM, Van Ert MN, Schupp JM, Easterday WR, Simonson TS, Okinaka RT, Pearson T, Keim P.

J Clin Microbiol. 2005 Nov;43(11):5771-4.

26.

Detection of diverse new Francisella-like bacteria in environmental samples.

Barns SM, Grow CC, Okinaka RT, Keim P, Kuske CR.

Appl Environ Microbiol. 2005 Sep;71(9):5494-500.

27.

Virulence signatures: microarray-based approaches to discovery and analysis.

Pannucci J, Cai H, Pardington PE, Williams E, Okinaka RT, Kuske CR, Cary RB.

Biosens Bioelectron. 2004 Nov 1;20(4):706-18.

PMID:
15522585
28.

Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates.

Hill KK, Ticknor LO, Okinaka RT, Asay M, Blair H, Bliss KA, Laker M, Pardington PE, Richardson AP, Tonks M, Beecher DJ, Kemp JD, Kolstø AB, Wong AC, Keim P, Jackson PJ.

Appl Environ Microbiol. 2004 Feb;70(2):1068-80.

29.

DNA sequence conservation between the Bacillus anthracis pXO2 plasmid and genomic sequence from closely related bacteria.

Pannucci J, Okinaka RT, Williams E, Sabin R, Ticknor LO, Kuske CR.

BMC Genomics. 2002 Dec 9;3(1):34. Epub 2002 Dec 9.

30.

Bacillus anthracis pXO1 plasmid sequence conservation among closely related bacterial species.

Pannucci J, Okinaka RT, Sabin R, Kuske CR.

J Bacteriol. 2002 Jan;184(1):134-41.

31.
32.

Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis.

Keim P, Price LB, Klevytska AM, Smith KL, Schupp JM, Okinaka R, Jackson PJ, Hugh-Jones ME.

J Bacteriol. 2000 May;182(10):2928-36.

33.

Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes.

Okinaka RT, Cloud K, Hampton O, Hoffmaster AR, Hill KK, Keim P, Koehler TM, Lamke G, Kumano S, Mahillon J, Manter D, Martinez Y, Ricke D, Svensson R, Jackson PJ.

J Bacteriol. 1999 Oct;181(20):6509-15.

34.

Sequence, assembly and analysis of pX01 and pX02.

Okinaka R, Cloud K, Hampton O, Hoffmaster A, Hill K, Keim P, Koehler T, Lamke G, Kumano S, Manter D, Martinez Y, Ricke D, Svensson R, Jackson P.

J Appl Microbiol. 1999 Aug;87(2):261-2.

35.

Molecular diversity in Bacillus anthracis.

Keim P, Klevytska AM, Price LB, Schupp JM, Zinser G, Smith KL, Hugh-Jones ME, Okinaka R, Hill KK, Jackson PJ.

J Appl Microbiol. 1999 Aug;87(2):215-7.

36.

Heritable genetic alterations in a xeroderma pigmentosum group G/Cockayne syndrome pedigree.

Okinaka RT, Perez-Castro AV, Sena A, Laubscher K, Strniste GF, Park MS, Hernandez R, MacInnes MA, Kraemer KH.

Mutat Res. 1997 Nov;385(2):107-14.

PMID:
9447232
37.

Alpha particle mutagenesis of human lymphoblastoid cell lines.

Amundson SA, Chen DJ, Okinaka RT.

Int J Radiat Biol. 1996 Aug;70(2):219-26.

PMID:
8794851
38.

Genomic structure and chromosomal assignment of the mouse Ku70 gene.

Takiguchi Y, Kurimasa A, Chen F, Pardington PE, Kuriyama T, Okinaka RT, Moyzis R, Chen DJ.

Genomics. 1996 Jul 1;35(1):129-35.

PMID:
8661113
39.
40.

Non-radioactive mismatch analysis to detect small mutations in human hypoxanthine-guanine phosphoribosyl transferase cDNA.

Tsuboi K, Nose T, Okinaka RT, Chen DJ.

Jpn J Med Sci Biol. 1995 Aug;48(4):163-75.

PMID:
8569042
41.

Use of denaturing gradient gel electrophoresis to identify mutant sequences in the beta-glucocerebrosidase gene.

Laubscher KH, Glew RH, Lee RE, Okinaka RT.

Hum Mutat. 1994;3(4):411-5. No abstract available.

PMID:
8081401
42.

Analysis of large X-ray-induced mutant populations by denaturing gradient gel electrophoresis.

Okinaka RT, Anzick SL, Oller A, Thilly WG.

Radiat Res. 1993 Aug;135(2):212-21.

PMID:
8367592
43.
44.

2-Nitrofluoren-9-one: a unique mutagen formed in the photo-oxidation of 2-aminofluorene.

Strniste GF, Nickols JW, Okinaka RT, Whaley TW.

Carcinogenesis. 1986 Mar;7(3):499-502.

PMID:
3948334
45.

1-Nitropyrene: a mutagenic product induced by the action of near ultraviolet light on 1-aminopyrene.

Okinaka RT, Nickols JW, Whaley TW, Strniste GF.

Mutat Res. 1986 Feb;173(2):93-8.

PMID:
3511370
47.

Phototransformation of 2-aminofluorene into N-oxidized mutagens.

Okinaka RT, Nickols JW, Whaley TW, Strniste GF.

Carcinogenesis. 1984 Dec;5(12):1741-3.

PMID:
6499127
48.

Light activation of a complex mixture: effects of UV excision repair on the modulation of genotoxic and molecular events in Chinese hamster cells.

Okinaka RT, Bingham JM, MacInnes MA, Strniste GF.

Photochem Photobiol. 1984 Mar;39(3):353-8. No abstract available.

PMID:
6718514
49.

Genotoxicity induced in cultured Chinese hamster cells exposed to natural or synthetic crude oils and near ultraviolet light.

Strniste GF, Bingham JM, Okinaka RT, Chen DJ.

Toxicol Lett. 1982 Oct;13(3-4):163-7.

PMID:
7147260
50.

Genotoxic effects of sunlight-activated waste water in cultured mammalian cells.

Strniste GF, Chen DJ, Okinaka RT.

J Natl Cancer Inst. 1982 Jul;69(1):199-203.

PMID:
6954312

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