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Items: 1 to 50 of 409

1.

Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits.

Kato S, Nakano S, Kouduka M, Hirai M, Suzuki K, Itoh T, Ohkuma M, Suzuki Y.

Microbes Environ. 2019 Aug 3. doi: 10.1264/jsme2.ME19021. [Epub ahead of print]

2.

Bacterial lipopolysaccharide and antimicrobial LL-37 enhance ICAM-1 expression and NF-κB p65 phosphorylation in senescent endothelial cells.

Suzuki K, Ohkuma M, Nagaoka I.

Int J Mol Med. 2019 Jul 31. doi: 10.3892/ijmm.2019.4294. [Epub ahead of print]

PMID:
31364735
3.

Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi.

Sriswasdi S, Takashima M, Manabe RI, Ohkuma M, Iwasaki W.

Commun Biol. 2019 Jul 19;2:263. doi: 10.1038/s42003-019-0515-2. eCollection 2019.

4.

Heterocephalacria mucosa sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand.

Kunthiphun S, Wattanagonniyom T, Endoh R, Takashima M, Ohkuma M, Tanasupawat S, Savarajara A.

Int J Syst Evol Microbiol. 2019 Jul 1. doi: 10.1099/ijsem.0.003562. [Epub ahead of print]

PMID:
31259676
5.

Draft Genome Sequences of Basidiomycetous Epiphytic Phylloplane Yeast Type Strains Dioszegia crocea JCM 2961 and Dioszegia aurantiaca JCM 2956.

Takashima M, Manabe RI, Ohkuma M.

Microbiol Resour Announc. 2019 Jun 27;8(26). pii: e01727-18. doi: 10.1128/MRA.01727-18.

6.

Draft Genome Sequence of Mesosutterella multiformis JCM 32464T, a Member of the Family Sutterellaceae, Isolated from Human Feces.

Ikeyama N, Ohkuma M, Sakamoto M.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00478-19. doi: 10.1128/MRA.00478-19.

7.

Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring.

Kato S, Itoh T, Yuki M, Nagamori M, Ohnishi M, Uematsu K, Suzuki K, Takashina T, Ohkuma M.

ISME J. 2019 Jun 6. doi: 10.1038/s41396-019-0447-3. [Epub ahead of print]

PMID:
31171857
8.

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales.

Takashima M, Manabe RI, Nishimura Y, Endoh R, Ohkuma M, Sriswasdi S, Sugita T, Iwasaki W.

Fungal Genet Biol. 2019 Apr 23;130:31-42. doi: 10.1016/j.fgb.2019.04.013. [Epub ahead of print]

PMID:
31026590
9.

Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127.

Nishimura Y, Shiratori T, Ishida KI, Hashimoto T, Ohkuma M, Inagaki Y.

Sci Rep. 2019 Mar 19;9(1):4850. doi: 10.1038/s41598-019-41238-6.

10.

Proposal of new combination, Cutibacterium acnes subsp. elongatum comb. nov., and emended descriptions of the genus Cutibacterium, Cutibacterium acnes subsp. acnes and Cutibacterium acnes subsp. defendens.

Dekio I, McDowell A, Sakamoto M, Tomida S, Ohkuma M.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1087-1092. doi: 10.1099/ijsem.0.003274. Epub 2019 Feb 14.

PMID:
30762517
11.

Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov.

Sakamoto M, Ikeyama N, Murakami T, Mori H, Yuki M, Ohkuma M.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1123-1129. doi: 10.1099/ijsem.0.003283. Epub 2019 Feb 14.

PMID:
30762516
12.

High-Resolution Comparison of Bacterial Conjugation Frequencies.

Shintani M, Ohkuma M, Kimbara K.

J Vis Exp. 2019 Jan 10;(143). doi: 10.3791/57812.

PMID:
30688297
13.

Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.

Ogata Y, Suda W, Ikeyama N, Hattori M, Ohkuma M, Sakamoto M.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01487-18. doi: 10.1128/MRA.01487-18. eCollection 2019 Jan.

14.

Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates.

Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H.

Int J Syst Evol Microbiol. 2019 Apr;69(4):964-969. doi: 10.1099/ijsem.0.003224. Epub 2019 Jan 10.

PMID:
30628884
15.

Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis.

Murakami T, Onouchi S, Igai K, Ohkuma M, Hongoh Y.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy238.

PMID:
30561598
16.

Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994.

Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2019 Feb;69(2):417-421. doi: 10.1099/ijsem.0.003160. Epub 2018 Dec 12.

PMID:
30540240
17.

Draft Genome Sequence of Faecalimonas umbilicata JCM 30896T, an Acetate-Producing Bacterium Isolated from Human Feces.

Sakamoto M, Ikeyama N, Yuki M, Ohkuma M.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01091-18. doi: 10.1128/MRA.01091-18. eCollection 2018 Sep.

18.

Complete Genome Sequence of Ferriphaselus amnicola Strain OYT1, a Neutrophilic, Stalk-Forming, Iron-Oxidizing Bacterium.

Kato S, Yuki M, Itoh T, Ohkuma M.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e00911-18. doi: 10.1128/MRA.00911-18. eCollection 2018 Sep.

19.

Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure.

Yanagiya K, Maejima Y, Nakata H, Tokuda M, Moriuchi R, Dohra H, Inoue K, Ohkuma M, Kimbara K, Shintani M.

Front Microbiol. 2018 Nov 6;9:2602. doi: 10.3389/fmicb.2018.02602. eCollection 2018.

20.

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.

Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Čadež N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.

Cell. 2018 Nov 29;175(6):1533-1545.e20. doi: 10.1016/j.cell.2018.10.023. Epub 2018 Nov 8.

PMID:
30415838
21.

Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces.

Sakamoto M, Ikeyama N, Kunihiro T, Iino T, Yuki M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3942-3950. doi: 10.1099/ijsem.0.003096. Epub 2018 Nov 5.

PMID:
30394865
22.

Lactococcus termiticola sp. nov., isolated from the gut of the wood-feeding higher termite Nasutitermes takasagoensis.

Noda S, Sakamoto M, Aihara C, Yuki M, Katsuhara M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3832-3836. doi: 10.1099/ijsem.0.003068. Epub 2018 Oct 15.

PMID:
30320546
23.

Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut.

Utami YD, Kuwahara H, Igai K, Murakami T, Sugaya K, Morikawa T, Nagura Y, Yuki M, Deevong P, Inoue T, Kihara K, Lo N, Yamada A, Ohkuma M, Hongoh Y.

ISME J. 2019 Feb;13(2):455-467. doi: 10.1038/s41396-018-0297-4. Epub 2018 Oct 4.

PMID:
30287885
24.

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses.

Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3512-3517. doi: 10.1099/ijsem.0.003020. Epub 2018 Sep 18.

PMID:
30226464
25.

Lipid production via simultaneous conversion of glucose and xylose by a novel yeast, Cystobasidium iriomotense.

Tanimura A, Sugita T, Endoh R, Ohkuma M, Kishino S, Ogawa J, Shima J, Takashima M.

PLoS One. 2018 Sep 12;13(9):e0202164. doi: 10.1371/journal.pone.0202164. eCollection 2018.

26.

Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium.

Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S.

Int J Syst Evol Microbiol. 2018 Oct;68(10):3333-3339. doi: 10.1099/ijsem.0.002995. Epub 2018 Aug 31.

PMID:
30168790
27.

Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton.

Kuncharoen N, Kudo T, Ohkuma M, Tanasupawat S.

Antonie Van Leeuwenhoek. 2019 Feb;112(2):253-262. doi: 10.1007/s10482-018-1152-3. Epub 2018 Aug 30.

PMID:
30167912
28.

The Influence of Pre-Analytical Factors on the Analysis of Circulating MicroRNA.

Shiotsu H, Okada K, Shibuta T, Kobayashi Y, Shirahama S, Kuroki C, Ueda S, Ohkuma M, Ikeda K, Ando Y, Matsui H, Kayamori Y, Umemura T.

Microrna. 2018;7(3):195-203. doi: 10.2174/2211536607666180709143335.

29.

Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166T, a Butyrate-Producing Bacterium, Isolated from Human Feces.

Sakamoto M, Ikeyama N, Yuki M, Ohkuma M.

Genome Announc. 2018 Jun 21;6(25). pii: e00563-18. doi: 10.1128/genomeA.00563-18.

30.

Draft Genome Sequence of Lactococcus sp. Strain NtB2 (JCM 32569), Isolated from the Gut of the Higher Termite Nasutitermes takasagoensis.

Noda S, Aihara C, Yuki M, Ohkuma M.

Genome Announc. 2018 Jun 14;6(24). pii: e00445-18. doi: 10.1128/genomeA.00445-18.

31.

Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches.

Kinjo Y, Bourguignon T, Tong KJ, Kuwahara H, Lim SJ, Yoon KB, Shigenobu S, Park YC, Nalepa CA, Hongoh Y, Ohkuma M, Lo N, Tokuda G.

Genome Biol Evol. 2018 Jun 1;10(6):1622-1630. doi: 10.1093/gbe/evy110.

32.

Mycobacterial biomaterials and resources for researchers.

Hazbón MH, Rigouts L, Schito M, Ezewudo M, Kudo T, Itoh T, Ohkuma M, Kiss K, Wu L, Ma J, Hamada M, Strong M, Salfinger M, Daley CL, Nick JA, Lee JS, Rastogi N, Couvin D, Hurtado-Ortiz R, Bizet C, Suresh A, Rodwell T, Albertini A, Lacourciere KA, Deheer-Graham A, Alexander S, Russell JE, Bradford R, Riojas MA.

Pathog Dis. 2018 Jun 1;76(4). doi: 10.1093/femspd/fty042. Review.

33.

Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces.

Sakamoto M, Iino T, Yuki M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Jun;68(6):2074-2081. doi: 10.1099/ijsem.0.002800. Epub 2018 May 10.

PMID:
29745868
34.

Standardization of surgical procedures to reduce risk of anastomotic leakage, reoperation, and surgical site infection in colorectal cancer surgery: a retrospective cohort study of 1189 patients.

Eto K, Urashima M, Kosuge M, Ohkuma M, Noaki R, Neki K, Ito D, Takeda Y, Sugano H, Yanaga K.

Int J Colorectal Dis. 2018 Jun;33(6):755-762. doi: 10.1007/s00384-018-3037-3. Epub 2018 Mar 30.

PMID:
29602975
35.

Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti.

Chiba M, Itabashi T, Hirai K, Sakamoto M, Ohkuma M, Ishige T, Kawasaki S.

Int J Syst Evol Microbiol. 2018 May;68(5):1484-1489. doi: 10.1099/ijsem.0.002694. Epub 2018 Mar 15.

PMID:
29543150
36.

Optical measurement of glutamate in slice preparations of the mouse retina.

Ohkuma M, Kaneda M, Yoshida S, Fukuda A, Miyachi E.

Neurosci Res. 2018 Dec;137:23-29. doi: 10.1016/j.neures.2018.03.001. Epub 2018 Mar 6.

PMID:
29522783
37.

Amycolatopsis oliviviridis sp. nov., a novel polylactic acid-bioplastic-degrading actinomycete isolated from paddy soil.

Penkhrue W, Sujarit K, Kudo T, Ohkuma M, Masaki K, Aizawa T, Pathom-Aree W, Khanongnuch C, Lumyong S.

Int J Syst Evol Microbiol. 2018 May;68(5):1448-1454. doi: 10.1099/ijsem.0.002682. Epub 2018 Mar 8.

PMID:
29517482
38.

Defunctioning Ileostomy Is a Key Risk Factor for Small Bowel Obstruction After Colorectal Cancer Resection.

Eto K, Kosuge M, Ohkuma M, Noaki R, Neki K, Ito D, Sugano H, Takeda Y, Yanaga K.

Anticancer Res. 2018 Mar;38(3):1789-1795.

PMID:
29491118
39.

Parolsenella catena gen. nov., sp. nov., isolated from human faeces.

Sakamoto M, Iino T, Hamada M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1165-1172. doi: 10.1099/ijsem.0.002645. Epub 2018 Feb 15.

PMID:
29458507
40.

Phylogenetic Diversity and Single-Cell Genome Analysis of "Melainabacteria", a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut.

Utami YD, Kuwahara H, Murakami T, Morikawa T, Sugaya K, Kihara K, Yuki M, Lo N, Deevong P, Hasin S, Boonriam W, Inoue T, Yamada A, Ohkuma M, Hongoh Y.

Microbes Environ. 2018 Mar 29;33(1):50-57. doi: 10.1264/jsme2.ME17137. Epub 2018 Mar 8.

41.

Host-Symbiont Cospeciation of Termite-Gut Cellulolytic Protists of the Genera Teranympha and Eucomonympha and their Treponema Endosymbionts.

Noda S, Shimizu D, Yuki M, Kitade O, Ohkuma M.

Microbes Environ. 2018 Mar 29;33(1):26-33. doi: 10.1264/jsme2.ME17096. Epub 2018 Jan 24.

42.

Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae Prototheca.

Suzuki S, Endoh R, Manabe RI, Ohkuma M, Hirakawa Y.

Sci Rep. 2018 Jan 17;8(1):940. doi: 10.1038/s41598-017-18378-8.

43.

Correction: Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions.

Nakazawa S, Haramiishi A, Fukuda K, Kanayama Y, Watanabe T, Yuki M, Ohkuma M, Takeda K, Kimbara K, Shintani M.

PLoS One. 2018 Jan 11;13(1):e0191393. doi: 10.1371/journal.pone.0191393. eCollection 2018.

44.

Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus.

Yuki M, Sakamoto M, Nishimura Y, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Feb;68(2):596-601. doi: 10.1099/ijsem.0.002549. Epub 2018 Jan 4.

PMID:
29300157
45.

In Memoriam Prof. Prof. h.c. Dr. med. Michael Földi, January 10, 1920 - October 20, 2018 "Father of Lymphology".

Piller N, Clodius L, Campisi C, Eliska O, Ohkuma M, Pissas A, Papendieck CM, Swedborg I, Ryan T, Witte MH.

Lymphology. 2018;51(4):184-192.

PMID:
31119908
46.

Comparison of Prokaryotic and Eukaryotic Communities in Soil Samples with and without Tomato Bacterial Wilt Collected from Different Fields.

Lee CG, Iida T, Uwagaki Y, Otani Y, Nakaho K, Ohkuma M.

Microbes Environ. 2017 Dec 27;32(4):376-385. doi: 10.1264/jsme2.ME17131. Epub 2017 Nov 28.

47.

Draft Genome Sequence of Tepidibacter mesophilus Strain JCM 16806T Isolated from Soil Polluted by Crude Oil in China.

Lee CG, Yuki M, Iida T, Nakaho K, Ohkuma M.

Genome Announc. 2017 Nov 22;5(47). pii: e01308-17. doi: 10.1128/genomeA.01308-17.

48.

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

Gao F, Al-Saari N, Rohul Amin AKM, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2017 Dec;40(8):516. doi: 10.1016/j.syapm.2017.10.002. No abstract available.

PMID:
29100655
49.

Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage.

Kobayashi H, Nakasato T, Sakamoto M, Ohtani Y, Terada F, Sakai K, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2017 Dec;67(12):4974-4978. doi: 10.1099/ijsem.0.002387. Epub 2017 Oct 16.

PMID:
29034861
50.

A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes.

Takashima M, Sriswasdi S, Manabe RI, Ohkuma M, Sugita T, Iwasaki W.

Yeast. 2018 Jan;35(1):99-111. doi: 10.1002/yea.3284. Epub 2017 Dec 6.

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