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Items: 1 to 50 of 424

1.

Reclassification of Clostridium diolis Biebl and Spröer 2003 as a later heterotypic synonym of Clostridium beijerinckii Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001.

Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2020 Feb 18. doi: 10.1099/ijsem.0.004059. [Epub ahead of print]

PMID:
32068529
2.

Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male.

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W.

Microbiol Resour Announc. 2020 Feb 13;9(7). pii: e01543-19. doi: 10.1128/MRA.01543-19.

3.

Clinical factors affecting the distal margin in rectal cancer surgery.

Kosuge M, Eto K, Sasaki S, Sugano H, Yatabe S, Takeda Y, Ito D, Ohkuma M, Yanaga K.

Surg Today. 2020 Jan 23. doi: 10.1007/s00595-020-01959-y. [Epub ahead of print]

PMID:
31974754
4.

Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.

Itoh T, Miura T, Sakai HD, Kato S, Ohkuma M, Takashina T.

Int J Syst Evol Microbiol. 2020 Jan 20. doi: 10.1099/ijsem.0.003981. [Epub ahead of print]

PMID:
31958046
5.

Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan.

Maejima Y, Iino T, Muraguchi Y, Fukuda K, Ohkuma M, Suzuki T, Moriuchi R, Dohra H, Kimbara K, Shintani M.

Curr Microbiol. 2020 Feb;77(2):306-312. doi: 10.1007/s00284-019-01823-4. Epub 2019 Dec 2.

PMID:
31792570
6.

Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring.

Iino T, Kawai S, Yuki M, Dekio I, Ohkuma M, Haruta S.

Int J Syst Evol Microbiol. 2019 Nov 28. doi: 10.1099/ijsem.0.003888. [Epub ahead of print]

PMID:
31778354
7.

Microbispora catharanthi sp. nov., a novel endophytic actinomycete isolated from the root of Catharanthus roseus.

Klykleung N, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Pittayakhajonwut P, Tanasupawat S.

Int J Syst Evol Microbiol. 2019 Nov 15. doi: 10.1099/ijsem.0.003858. [Epub ahead of print]

PMID:
31730033
8.

Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics.

Kato S, Hirai M, Ohkuma M, Suzuki K.

PLoS One. 2019 Nov 8;14(11):e0224888. doi: 10.1371/journal.pone.0224888. eCollection 2019.

9.

Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan.

Maejima Y, Iino T, Muraguchi Y, Ohkuma M, Kimbara K, Shintani M.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2108-2113. doi: 10.1099/ijsem.0.003447.

PMID:
31663498
10.

Dialister hominis sp. nov., isolated from human faeces.

Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Iino T, Ohkuma M.

Int J Syst Evol Microbiol. 2020 Jan;70(1):589-595. doi: 10.1099/ijsem.0.003797.

PMID:
31661048
11.

Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.

Sakamoto M, Ikeyama N, Ogata Y, Suda W, Iino T, Hattori M, Ohkuma M.

Int J Syst Evol Microbiol. 2020 Jan;70(1):473-480. doi: 10.1099/ijsem.0.003778.

PMID:
31633480
12.

Streptomyces bauhiniae sp. nov., isolated from tree bark of Bauhinia variegata Linn. in Thailand.

Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Kuncharoen N, Phongsopitanun W, Tanasupawat S.

Int J Syst Evol Microbiol. 2020 Jan;70(1):228-233. doi: 10.1099/ijsem.0.003743.

PMID:
31592758
13.

Identification of the Risk Factors for Recurrence of Stage III Colorectal Cancer.

Neki K, Eto K, Kosuge M, Ohkuma M, Ito D, Takeda Y, Yatabe S, Sugano H, Yanaga K.

Anticancer Res. 2019 Oct;39(10):5721-5724. doi: 10.21873/anticanres.13772.

PMID:
31570473
14.

Draft Genome Sequence of Novel Metschnikowia sp. Strain JCM 33374, a Nectar Yeast Isolated from a Bumblebee.

Hirao AS, Imai R, Endoh R, Ohkuma M, Degawa Y.

Microbiol Resour Announc. 2019 Sep 12;8(37). pii: e00704-19. doi: 10.1128/MRA.00704-19.

15.

Nonomuraea phyllanthi sp. nov., an endophytic actinomycete isolated from the leaf of Phyllanthus amarus.

Klykleung N, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Pittayakhajonwut P, Tanasupawat S.

Arch Microbiol. 2020 Jan;202(1):55-61. doi: 10.1007/s00203-019-01717-w. Epub 2019 Aug 28.

PMID:
31463600
16.

Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits.

Kato S, Nakano S, Kouduka M, Hirai M, Suzuki K, Itoh T, Ohkuma M, Suzuki Y.

Microbes Environ. 2019 Sep 25;34(3):293-303. doi: 10.1264/jsme2.ME19021. Epub 2019 Aug 3.

17.

Bacterial lipopolysaccharide and antimicrobial LL-37 enhance ICAM-1 expression and NF-κB p65 phosphorylation in senescent endothelial cells.

Suzuki K, Ohkuma M, Nagaoka I.

Int J Mol Med. 2019 Oct;44(4):1187-1196. doi: 10.3892/ijmm.2019.4294. Epub 2019 Jul 31.

18.

Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi.

Sriswasdi S, Takashima M, Manabe RI, Ohkuma M, Iwasaki W.

Commun Biol. 2019 Jul 19;2:263. doi: 10.1038/s42003-019-0515-2. eCollection 2019.

19.

Heterocephalacria mucosa sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand.

Kunthiphun S, Wattanagonniyom T, Endoh R, Takashima M, Ohkuma M, Tanasupawat S, Savarajara A.

Int J Syst Evol Microbiol. 2019 Sep;69(9):2823-2827. doi: 10.1099/ijsem.0.003562.

PMID:
31259676
20.

Draft Genome Sequences of Basidiomycetous Epiphytic Phylloplane Yeast Type Strains Dioszegia crocea JCM 2961 and Dioszegia aurantiaca JCM 2956.

Takashima M, Manabe RI, Ohkuma M.

Microbiol Resour Announc. 2019 Jun 27;8(26). pii: e01727-18. doi: 10.1128/MRA.01727-18.

21.

Draft Genome Sequence of Mesosutterella multiformis JCM 32464T, a Member of the Family Sutterellaceae, Isolated from Human Feces.

Ikeyama N, Ohkuma M, Sakamoto M.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00478-19. doi: 10.1128/MRA.00478-19.

22.

Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring.

Kato S, Itoh T, Yuki M, Nagamori M, Ohnishi M, Uematsu K, Suzuki K, Takashina T, Ohkuma M.

ISME J. 2019 Oct;13(10):2465-2474. doi: 10.1038/s41396-019-0447-3. Epub 2019 Jun 6.

PMID:
31171857
23.

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales.

Takashima M, Manabe RI, Nishimura Y, Endoh R, Ohkuma M, Sriswasdi S, Sugita T, Iwasaki W.

Fungal Genet Biol. 2019 Sep;130:31-42. doi: 10.1016/j.fgb.2019.04.013. Epub 2019 Apr 23.

PMID:
31026590
24.

Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127.

Nishimura Y, Shiratori T, Ishida KI, Hashimoto T, Ohkuma M, Inagaki Y.

Sci Rep. 2019 Mar 19;9(1):4850. doi: 10.1038/s41598-019-41238-6.

25.

Proposal of new combination, Cutibacterium acnes subsp. elongatum comb. nov., and emended descriptions of the genus Cutibacterium, Cutibacterium acnes subsp. acnes and Cutibacterium acnes subsp. defendens.

Dekio I, McDowell A, Sakamoto M, Tomida S, Ohkuma M.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1087-1092. doi: 10.1099/ijsem.0.003274. Epub 2019 Feb 14.

PMID:
30762517
26.

Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov.

Sakamoto M, Ikeyama N, Murakami T, Mori H, Yuki M, Ohkuma M.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1123-1129. doi: 10.1099/ijsem.0.003283. Epub 2019 Feb 14.

PMID:
30762516
27.

High-Resolution Comparison of Bacterial Conjugation Frequencies.

Shintani M, Ohkuma M, Kimbara K.

J Vis Exp. 2019 Jan 10;(143). doi: 10.3791/57812.

PMID:
30688297
28.

Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.

Ogata Y, Suda W, Ikeyama N, Hattori M, Ohkuma M, Sakamoto M.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01487-18. doi: 10.1128/MRA.01487-18. eCollection 2019 Jan.

29.

Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates.

Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H.

Int J Syst Evol Microbiol. 2019 Apr;69(4):964-969. doi: 10.1099/ijsem.0.003224. Epub 2019 Jan 10.

PMID:
30628884
30.

Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis.

Murakami T, Onouchi S, Igai K, Ohkuma M, Hongoh Y.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy238.

PMID:
30561598
31.

Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994.

Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2019 Feb;69(2):417-421. doi: 10.1099/ijsem.0.003160. Epub 2018 Dec 12.

PMID:
30540240
32.

Draft Genome Sequence of Faecalimonas umbilicata JCM 30896T, an Acetate-Producing Bacterium Isolated from Human Feces.

Sakamoto M, Ikeyama N, Yuki M, Ohkuma M.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01091-18. doi: 10.1128/MRA.01091-18. eCollection 2018 Sep.

33.

Complete Genome Sequence of Ferriphaselus amnicola Strain OYT1, a Neutrophilic, Stalk-Forming, Iron-Oxidizing Bacterium.

Kato S, Yuki M, Itoh T, Ohkuma M.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e00911-18. doi: 10.1128/MRA.00911-18. eCollection 2018 Sep.

34.

Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure.

Yanagiya K, Maejima Y, Nakata H, Tokuda M, Moriuchi R, Dohra H, Inoue K, Ohkuma M, Kimbara K, Shintani M.

Front Microbiol. 2018 Nov 6;9:2602. doi: 10.3389/fmicb.2018.02602. eCollection 2018.

35.

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.

Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Čadež N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.

Cell. 2018 Nov 29;175(6):1533-1545.e20. doi: 10.1016/j.cell.2018.10.023. Epub 2018 Nov 8.

36.

Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces.

Sakamoto M, Ikeyama N, Kunihiro T, Iino T, Yuki M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3942-3950. doi: 10.1099/ijsem.0.003096. Epub 2018 Nov 5.

PMID:
30394865
37.

Lactococcus termiticola sp. nov., isolated from the gut of the wood-feeding higher termite Nasutitermes takasagoensis.

Noda S, Sakamoto M, Aihara C, Yuki M, Katsuhara M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3832-3836. doi: 10.1099/ijsem.0.003068. Epub 2018 Oct 15.

PMID:
30320546
38.

Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut.

Utami YD, Kuwahara H, Igai K, Murakami T, Sugaya K, Morikawa T, Nagura Y, Yuki M, Deevong P, Inoue T, Kihara K, Lo N, Yamada A, Ohkuma M, Hongoh Y.

ISME J. 2019 Feb;13(2):455-467. doi: 10.1038/s41396-018-0297-4. Epub 2018 Oct 4.

39.

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses.

Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3512-3517. doi: 10.1099/ijsem.0.003020. Epub 2018 Sep 18.

PMID:
30226464
40.

Lipid production via simultaneous conversion of glucose and xylose by a novel yeast, Cystobasidium iriomotense.

Tanimura A, Sugita T, Endoh R, Ohkuma M, Kishino S, Ogawa J, Shima J, Takashima M.

PLoS One. 2018 Sep 12;13(9):e0202164. doi: 10.1371/journal.pone.0202164. eCollection 2018.

41.

Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium.

Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S.

Int J Syst Evol Microbiol. 2018 Oct;68(10):3333-3339. doi: 10.1099/ijsem.0.002995. Epub 2018 Aug 31.

PMID:
30168790
42.

Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton.

Kuncharoen N, Kudo T, Ohkuma M, Tanasupawat S.

Antonie Van Leeuwenhoek. 2019 Feb;112(2):253-262. doi: 10.1007/s10482-018-1152-3. Epub 2018 Aug 30.

PMID:
30167912
43.

The Influence of Pre-Analytical Factors on the Analysis of Circulating MicroRNA.

Shiotsu H, Okada K, Shibuta T, Kobayashi Y, Shirahama S, Kuroki C, Ueda S, Ohkuma M, Ikeda K, Ando Y, Matsui H, Kayamori Y, Umemura T.

Microrna. 2018;7(3):195-203. doi: 10.2174/2211536607666180709143335.

44.

Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166T, a Butyrate-Producing Bacterium, Isolated from Human Feces.

Sakamoto M, Ikeyama N, Yuki M, Ohkuma M.

Genome Announc. 2018 Jun 21;6(25). pii: e00563-18. doi: 10.1128/genomeA.00563-18.

45.

Draft Genome Sequence of Lactococcus sp. Strain NtB2 (JCM 32569), Isolated from the Gut of the Higher Termite Nasutitermes takasagoensis.

Noda S, Aihara C, Yuki M, Ohkuma M.

Genome Announc. 2018 Jun 14;6(24). pii: e00445-18. doi: 10.1128/genomeA.00445-18.

46.

Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches.

Kinjo Y, Bourguignon T, Tong KJ, Kuwahara H, Lim SJ, Yoon KB, Shigenobu S, Park YC, Nalepa CA, Hongoh Y, Ohkuma M, Lo N, Tokuda G.

Genome Biol Evol. 2018 Jun 1;10(6):1622-1630. doi: 10.1093/gbe/evy110.

47.

Mycobacterial biomaterials and resources for researchers.

Hazbón MH, Rigouts L, Schito M, Ezewudo M, Kudo T, Itoh T, Ohkuma M, Kiss K, Wu L, Ma J, Hamada M, Strong M, Salfinger M, Daley CL, Nick JA, Lee JS, Rastogi N, Couvin D, Hurtado-Ortiz R, Bizet C, Suresh A, Rodwell T, Albertini A, Lacourciere KA, Deheer-Graham A, Alexander S, Russell JE, Bradford R, Riojas MA.

Pathog Dis. 2018 Jun 1;76(4). doi: 10.1093/femspd/fty042. Review.

48.

Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces.

Sakamoto M, Iino T, Yuki M, Ohkuma M.

Int J Syst Evol Microbiol. 2018 Jun;68(6):2074-2081. doi: 10.1099/ijsem.0.002800. Epub 2018 May 10.

PMID:
29745868
49.

Standardization of surgical procedures to reduce risk of anastomotic leakage, reoperation, and surgical site infection in colorectal cancer surgery: a retrospective cohort study of 1189 patients.

Eto K, Urashima M, Kosuge M, Ohkuma M, Noaki R, Neki K, Ito D, Takeda Y, Sugano H, Yanaga K.

Int J Colorectal Dis. 2018 Jun;33(6):755-762. doi: 10.1007/s00384-018-3037-3. Epub 2018 Mar 30.

PMID:
29602975
50.

Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti.

Chiba M, Itabashi T, Hirai K, Sakamoto M, Ohkuma M, Ishige T, Kawasaki S.

Int J Syst Evol Microbiol. 2018 May;68(5):1484-1489. doi: 10.1099/ijsem.0.002694. Epub 2018 Mar 15.

PMID:
29543150

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