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Items: 29

1.

Efficient Production and Identification of CRISPR/Cas9-generated Gene Knockouts in the Model System Danio rerio.

Sorlien EL, Witucki MA, Ogas J.

J Vis Exp. 2018 Aug 28;(138). doi: 10.3791/56969.

2.

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis.

Carter B, Bishop B, Ho KK, Huang R, Jia W, Zhang H, Pascuzzi PE, Deal RB, Ogas J.

Plant Cell. 2018 Jun;30(6):1337-1352. doi: 10.1105/tpc.17.00867. Epub 2018 May 25.

3.

The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci.

Yang R, Zheng Z, Chen Q, Yang L, Huang H, Miki D, Wu W, Zeng L, Liu J, Zhou JX, Ogas J, Zhu JK, He XJ, Zhang H.

Genome Biol. 2017 May 31;18(1):103. doi: 10.1186/s13059-017-1226-y.

4.

Gibberellin Signaling Requires Chromatin Remodeler PICKLE to Promote Vegetative Growth and Phase Transitions.

Park J, Oh DH, Dassanayake M, Nguyen KT, Ogas J, Choi G, Sun TP.

Plant Physiol. 2017 Feb;173(2):1463-1474. doi: 10.1104/pp.16.01471. Epub 2017 Jan 5.

5.

Perturbation of H3K27me3-Associated Epigenetic Processes Increases Agrobacterium-Mediated Transformation.

Iwakawa H, Carter BC, Bishop BC, Ogas J, Gelvin SB.

Mol Plant Microbe Interact. 2017 Jan;30(1):35-44. doi: 10.1094/MPMI-12-16-0250-R. Epub 2017 Jan 13.

6.

Cross-Talk Between Sporophyte and Gametophyte Generations Is Promoted by CHD3 Chromatin Remodelers in Arabidopsis thaliana.

Carter B, Henderson JT, Svedin E, Fiers M, McCarthy K, Smith A, Guo C, Bishop B, Zhang H, Riksen T, Shockley A, Dilkes BP, Boutilier K, Ogas J.

Genetics. 2016 Jun;203(2):817-29. doi: 10.1534/genetics.115.180141. Epub 2016 Apr 13.

7.

The chromatin remodeler chd5 is necessary for proper head development during embryogenesis of Danio rerio.

Bishop B, Ho KK, Tyler K, Smith A, Bonilla S, Leung YF, Ogas J.

Biochim Biophys Acta. 2015 Aug;1849(8):1040-50. doi: 10.1016/j.bbagrm.2015.06.006. Epub 2015 Jun 17.

8.

Immediate chromatin immunoprecipitation and on-bead quantitative PCR analysis: a versatile and rapid ChIP procedure.

Harmeyer KM, South PF, Bishop B, Ogas J, Briggs SD.

Nucleic Acids Res. 2015 Mar 31;43(6):e38. doi: 10.1093/nar/gku1347. Epub 2014 Dec 24.

9.

PICKLE is a CHD subfamily II ATP-dependent chromatin remodeling factor.

Ho KK, Zhang H, Golden BL, Ogas J.

Biochim Biophys Acta. 2013 Feb;1829(2):199-210. doi: 10.1016/j.bbagrm.2012.10.011. Epub 2012 Nov 2.

10.

The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27.

Zhang H, Bishop B, Ringenberg W, Muir WM, Ogas J.

Plant Physiol. 2012 May;159(1):418-32. doi: 10.1104/pp.112.194878. Epub 2012 Mar 27.

11.

A mixture model approach for the analysis of small exploratory microarray experiments.

Muir WM, Rosa GJ, Pittendrigh BR, Xu S, Rider SD, Fountain M, Ogas J.

Comput Stat Data Anal. 2009 Mar 15;53(5):1566-1576.

12.

An epigenetic perspective on developmental regulation of seed genes.

Zhang H, Ogas J.

Mol Plant. 2009 Jul;2(4):610-627. doi: 10.1093/mp/ssp027. Epub 2009 May 11. Review.

13.

The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27.

Zhang H, Rider SD Jr, Henderson JT, Fountain M, Chuang K, Kandachar V, Simons A, Edenberg HJ, Romero-Severson J, Muir WM, Ogas J.

J Biol Chem. 2008 Aug 15;283(33):22637-48. doi: 10.1074/jbc.M802129200. Epub 2008 Jun 6.

15.

PICKLE acts during germination to repress expression of embryonic traits.

Li HC, Chuang K, Henderson JT, Rider SD Jr, Bai Y, Zhang H, Fountain M, Gerber J, Ogas J.

Plant J. 2005 Dec;44(6):1010-22.

17.

Light induces phenylpropanoid metabolism in Arabidopsis roots.

Hemm MR, Rider SD, Ogas J, Murry DJ, Chapple C.

Plant J. 2004 Jun;38(5):765-78.

18.

Metabolic profiling of the Arabidopsis pkl mutant reveals selective derepression of embryonic traits.

Rider SD Jr, Hemm MR, Hostetler HA, Li HC, Chapple C, Ogas J.

Planta. 2004 Jul;219(3):489-99. Epub 2004 Apr 15.

19.

PICKLE acts throughout the plant to repress expression of embryonic traits and may play a role in gibberellin-dependent responses.

Henderson JT, Li HC, Rider SD, Mordhorst AP, Romero-Severson J, Cheng JC, Robey J, Sung ZR, de Vries SC, Ogas J.

Plant Physiol. 2004 Mar;134(3):995-1005. Epub 2004 Feb 12.

20.

Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis.

Dean Rider S Jr, Henderson JT, Jerome RE, Edenberg HJ, Romero-Severson J, Ogas J.

Plant J. 2003 Jul;35(1):33-43.

21.

Gibberellins

Ogas J.

Curr Biol. 2000 Jan 27;10(2):R48. No abstract available.

22.

PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis.

Ogas J, Kaufmann S, Henderson J, Somerville C.

Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):13839-44.

23.

Dissecting the gibberellin response pathway.

Ogas J.

Curr Biol. 1998 Feb 26;8(5):R165-7. Review.

24.
25.

Cellular differentiation regulated by gibberellin in the Arabidopsis thaliana pickle mutant.

Ogas J, Cheng JC, Sung ZR, Somerville C.

Science. 1997 Jul 4;277(5322):91-4.

26.

The PCL2 (ORFD)-PHO85 cyclin-dependent kinase complex: a cell cycle regulator in yeast.

Measday V, Moore L, Ogas J, Tyers M, Andrews B.

Science. 1994 Nov 25;266(5189):1391-5.

PMID:
7973731
27.

Cell cycle control by a complex of the cyclin HCS26 (PCL1) and the kinase PHO85.

Espinoza FH, Ogas J, Herskowitz I, Morgan DO.

Science. 1994 Nov 25;266(5189):1388-91.

PMID:
7973730
29.

Regulators of synthesis and activity of the G1 cyclins of budding yeast.

Herskowitz I, Ogas J, Andrews BJ, Chang F.

Cold Spring Harb Symp Quant Biol. 1991;56:33-40. Review. No abstract available.

PMID:
1840254

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