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Items: 28

1.

Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway.

Lessard F, Igelmann S, Trahan C, Huot G, Saint-Germain E, Mignacca L, Del Toro N, Lopes-Paciencia S, Le Calvé B, Montero M, Deschênes-Simard X, Bury M, Moiseeva O, Rowell MC, Zorca CE, Zenklusen D, Brakier-Gingras L, Bourdeau V, Oeffinger M, Ferbeyre G.

Nat Cell Biol. 2018 Jul;20(7):789-799. doi: 10.1038/s41556-018-0127-y. Epub 2018 Jun 25.

PMID:
29941930
2.

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism.

Scott DD, Trahan C, Zindy PJ, Aguilar LC, Delubac MY, Van Nostrand EL, Adivarahan S, Wei KE, Yeo GW, Zenklusen D, Oeffinger M.

Nucleic Acids Res. 2017 Dec 1;45(21):12509-12528. doi: 10.1093/nar/gkx963.

PMID:
29069457
3.

The RNA chaperone La promotes pre-tRNA maturation via indiscriminate binding of both native and misfolded targets.

Vakiloroayaei A, Shah NS, Oeffinger M, Bayfield MA.

Nucleic Acids Res. 2017 Nov 2;45(19):11341-11355. doi: 10.1093/nar/gkx764.

4.

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast.

Burlacu E, Lackmann F, Aguilar LC, Belikov S, Nues RV, Trahan C, Hector RD, Dominelli-Whiteley N, Cockroft SL, Wieslander L, Oeffinger M, Granneman S.

Nat Commun. 2017 Sep 28;8(1):714. doi: 10.1038/s41467-017-00761-8.

5.

DDX54 regulates transcriptome dynamics during DNA damage response.

Milek M, Imami K, Mukherjee N, Bortoli F, Zinnall U, Hazapis O, Trahan C, Oeffinger M, Heyd F, Ohler U, Selbach M, Landthaler M.

Genome Res. 2017 Aug;27(8):1344-1359. doi: 10.1101/gr.218438.116. Epub 2017 Jun 8.

6.

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors.

Reimer KA, Stark MR, Aguilar LC, Stark SR, Burke RD, Moore J, Fahlman RP, Yip CK, Kuroiwa H, Oeffinger M, Rader SD.

RNA. 2017 Jun;23(6):952-967. doi: 10.1261/rna.058487.116. Epub 2017 Mar 21.

7.

Nucleolin and nucleophosmin: nucleolar proteins with multiple functions in DNA repair.

Scott DD, Oeffinger M.

Biochem Cell Biol. 2016 Oct;94(5):419-432. Epub 2016 Jun 29. Review.

PMID:
27673355
8.

Structural biology: Moulding the ribosome.

Oeffinger M.

Nature. 2016 Sep 1;537(7618):38-40. doi: 10.1038/537038a. No abstract available.

PMID:
27582216
9.

Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae.

Bensidoun P, Raymond P, Oeffinger M, Zenklusen D.

Methods. 2016 Apr 1;98:104-114. doi: 10.1016/j.ymeth.2016.01.006. Epub 2016 Jan 16.

PMID:
26784711
10.

The nuclear basket mediates perinuclear mRNA scanning in budding yeast.

Saroufim MA, Bensidoun P, Raymond P, Rahman S, Krause MR, Oeffinger M, Zenklusen D.

J Cell Biol. 2015 Dec 21;211(6):1131-40. doi: 10.1083/jcb.201503070.

11.

Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes.

Trahan C, Oeffinger M.

Nucleic Acids Res. 2016 Feb 18;44(3):1354-69. doi: 10.1093/nar/gkv1366. Epub 2015 Dec 10.

12.

Single-Step Affinity Purification (ssAP) and Mass Spectrometry of Macromolecular Complexes in the Yeast S. cerevisiae.

Trahan C, Aguilar LC, Oeffinger M.

Methods Mol Biol. 2016;1361:265-87. doi: 10.1007/978-1-4939-3079-1_15.

PMID:
26483027
13.

Emerging properties of nuclear RNP biogenesis and export.

Oeffinger M, Montpetit B.

Curr Opin Cell Biol. 2015 Jun;34:46-53. doi: 10.1016/j.ceb.2015.04.007. Epub 2015 May 15. Review.

PMID:
25938908
14.

A robust pipeline for rapid production of versatile nanobody repertoires.

Fridy PC, Li Y, Keegan S, Thompson MK, Nudelman I, Scheid JF, Oeffinger M, Nussenzweig MC, Fenyö D, Chait BT, Rout MP.

Nat Methods. 2014 Dec;11(12):1253-60. doi: 10.1038/nmeth.3170. Epub 2014 Nov 2.

15.

Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs.

Bretes H, Rouviere JO, Leger T, Oeffinger M, Devaux F, Doye V, Palancade B.

Nucleic Acids Res. 2014 Apr;42(8):5043-58. doi: 10.1093/nar/gku124. Epub 2014 Feb 5.

16.

Two steps forward--one step back: advances in affinity purification mass spectrometry of macromolecular complexes.

Oeffinger M.

Proteomics. 2012 May;12(10):1591-608. doi: 10.1002/pmic.201100509. Review.

PMID:
22592981
17.

To the pore and through the pore: a story of mRNA export kinetics.

Oeffinger M, Zenklusen D.

Biochim Biophys Acta. 2012 Jun;1819(6):494-506. doi: 10.1016/j.bbagrm.2012.02.011. Epub 2012 Feb 22. Review.

18.

Joining the interface: a site for Nmd3 association on 60S ribosome subunits.

Oeffinger M.

J Cell Biol. 2010 Jun 28;189(7):1071-3. doi: 10.1083/jcb.201006033. Review.

19.

Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA.

Oeffinger M, Zenklusen D, Ferguson A, Wei KE, El Hage A, Tollervey D, Chait BT, Singer RH, Rout MP.

Mol Cell. 2009 Dec 11;36(5):768-81. doi: 10.1016/j.molcel.2009.11.011.

20.

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.

Zhang J, Harnpicharnchai P, Jakovljevic J, Tang L, Guo Y, Oeffinger M, Rout MP, Hiley SL, Hughes T, Woolford JL Jr.

Genes Dev. 2007 Oct 15;21(20):2580-92.

21.

Comprehensive analysis of diverse ribonucleoprotein complexes.

Oeffinger M, Wei KE, Rogers R, DeGrasse JA, Chait BT, Aitchison JD, Rout MP.

Nat Methods. 2007 Nov;4(11):951-6. Epub 2007 Oct 7.

PMID:
17922018
22.

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis.

Oeffinger M, Fatica A, Rout MP, Tollervey D.

Nucleic Acids Res. 2007;35(4):1354-66. Epub 2007 Feb 1.

23.

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions.

Tackett AJ, DeGrasse JA, Sekedat MD, Oeffinger M, Rout MP, Chait BT.

J Proteome Res. 2005 Sep-Oct;4(5):1752-6.

PMID:
16212429
24.

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits.

Oeffinger M, Dlakic M, Tollervey D.

Genes Dev. 2004 Jan 15;18(2):196-209. Epub 2004 Jan 16.

25.
26.

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits.

Fatica A, Oeffinger M, Tollervey D, Bozzoni I.

RNA. 2003 Dec;9(12):1431-6.

27.

Nob1p is required for cleavage of the 3' end of 18S rRNA.

Fatica A, Oeffinger M, Dlakić M, Tollervey D.

Mol Cell Biol. 2003 Mar;23(5):1798-807.

28.

Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis.

Oeffinger M, Leung A, Lamond A, Tollervey D.

RNA. 2002 May;8(5):626-36. Erratum in: RNA 2002 Jun;8(6):851. Lueng Anthony [corrected to Leung Anthony].

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