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Items: 1 to 50 of 62

1.

Genomic epidemiology of Iranian Bordetella pertussis: 50 years after the implementation of whole cell vaccine.

Safarchi A, Octavia S, Nikbin VS, Lotfi MN, Zahraei SM, Tay CY, Lamichhane B, Shahcheraghi F, Lan R.

Emerg Microbes Infect. 2019;8(1):1416-1427. doi: 10.1080/22221751.2019.1665479.

2.

Klebsiella pneumoniae and Klebsiella quasipneumoniae define the population structure of blaKPC-2Klebsiella: a 5 year retrospective genomic study in Singapore.

Octavia S, Kalisvar M, Venkatachalam I, Ng OT, Xu W, Sridatta PSR, Ong YF, Wang L, Chua A, Cheng B, Lin RTP, Teo JWP.

J Antimicrob Chemother. 2019 Nov 1;74(11):3205-3210. doi: 10.1093/jac/dkz332.

PMID:
31504571
3.

Pertactin-Negative and Filamentous Hemagglutinin-Negative Bordetella pertussis, Australia, 2013-2017.

Xu Z, Octavia S, Luu LDW, Payne M, Timms V, Tay CY, Keil AD, Sintchenko V, Guiso N, Lan R.

Emerg Infect Dis. 2019 Jun;25(6):1196-1199. doi: 10.3201/eid2506.180240.

4.

Challenge of drug resistance in Pseudomonas aeruginosa: clonal spread of NDM-1-positive ST-308 within a tertiary hospital.

Chew KL, Octavia S, Ng OT, Marimuthu K, Venkatachalam I, Cheng B, Lin RTP, Teo JWP.

J Antimicrob Chemother. 2019 Aug 1;74(8):2220-2224. doi: 10.1093/jac/dkz169.

PMID:
31081022
5.

In vivo development of amoxicillin and ceftriaxone resistance in Salmonella enterica serovar Typhi.

Tan GSE, Octavia S, Teo JWP, Ang MLT, La MV, Lin RTP, Choudhury S, Ang BSP.

Clin Microbiol Infect. 2019 Aug;25(8):1045-1047. doi: 10.1016/j.cmi.2019.03.015. Epub 2019 Mar 23. No abstract available.

PMID:
30914348
6.

Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China.

Xu Z, Wang Z, Luan Y, Li Y, Liu X, Peng X, Octavia S, Payne M, Lan R.

Emerg Microbes Infect. 2019;8(1):461-470. doi: 10.1080/22221751.2019.1587315.

7.

Whole-genome sequencing of the rare Salmonella enterica serovar Anfo isolated from food handlers.

Octavia S, Zulaina S, Seet SK, Tien WS, Thu M, Ooi PL, Cui L, Lin RTP.

J Med Microbiol. 2019 Mar;68(3):429-431. doi: 10.1099/jmm.0.000934. Epub 2019 Jan 30.

PMID:
30698521
8.

Delay in effective therapy in anidulafungin-resistant Candida tropicalis fungaemia: Potential for rapid prediction of antifungal resistance with whole-genome-sequencing.

Chew KL, Octavia S, Lin RTP, Yan GZ, Teo JWP.

J Glob Antimicrob Resist. 2019 Mar;16:105-107. doi: 10.1016/j.jgar.2018.12.010. Epub 2018 Dec 21.

PMID:
30583013
9.

Comparison of the Whole Cell Proteome and Secretome of Epidemic Bordetella pertussis Strains From the 2008-2012 Australian Epidemic Under Sulfate-Modulating Conditions.

Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Front Microbiol. 2018 Nov 27;9:2851. doi: 10.3389/fmicb.2018.02851. eCollection 2018.

10.

Detection of OXA-carbapenemase-producing Enterobacteriaceae with chromID CARBA SMART screening plate.

Lee SY, Octavia S, Chew KL.

Pathology. 2019 Jan;51(1):108-110. doi: 10.1016/j.pathol.2018.08.017. Epub 2018 Nov 16. No abstract available.

PMID:
30454880
11.

Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae.

Greig DR, Schaefer U, Octavia S, Hunter E, Chattaway MA, Dallman TJ, Jenkins C.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00831-18. doi: 10.1128/JCM.00831-18. Print 2018 Nov.

12.

Aztreonam-Avibactam Combination Restores Susceptibility of Aztreonam in Dual-Carbapenemase-Producing Enterobacteriaceae.

Chew KL, Tay MKL, Cheng B, Lin RTP, Octavia S, Teo JWP.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00414-18. doi: 10.1128/AAC.00414-18. Print 2018 Aug. No abstract available.

13.

Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn's disease.

Liu F, Ma R, Tay CYA, Octavia S, Lan R, Chung HKL, Riordan SM, Grimm MC, Leong RW, Tanaka MM, Connor S, Zhang L.

Emerg Microbes Infect. 2018 Apr 11;7(1):64. doi: 10.1038/s41426-018-0065-6.

14.

Retrospective genome-wide comparisons of Salmonella enterica serovar Enteritidis from suspected outbreaks in Singapore.

Octavia S, Ang MLT, La MV, Zulaina S, Saat ZAAS, Tien WS, Han HK, Ooi PL, Cui L, Lin RTP.

Infect Genet Evol. 2018 Jul;61:229-233. doi: 10.1016/j.meegid.2018.04.004. Epub 2018 Apr 4.

PMID:
29625239
15.

Proteomic Adaptation of Australian Epidemic Bordetella pertussis.

Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Proteomics. 2018 Apr;18(8):e1700237. doi: 10.1002/pmic.201700237.

PMID:
29464899
16.

mcr-3 and mcr-4 Variants in Carbapenemase-Producing Clinical Enterobacteriaceae Do Not Confer Phenotypic Polymyxin Resistance.

Teo JWP, Kalisvar M, Venkatachalam I, Ng OT, Lin RTP, Octavia S.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01562-17. doi: 10.1128/JCM.01562-17. Print 2018 Mar. No abstract available.

17.

Shiga Toxin-Producing Escherichia coli O157 Shedding Dynamics in an Australian Beef Herd.

Ahlstrom C, Muellner P, Lammers G, Jones M, Octavia S, Lan R, Heller J.

Front Vet Sci. 2017 Nov 27;4:200. doi: 10.3389/fvets.2017.00200. eCollection 2017.

18.

Evaluation of an in-house developed multiplex real-time PCR for the detection of IMP, OXA-23, GES carbapenemases and the transmissible colistin-resistant mcr gene on the BD MAX™ open system.

Teo JW, Octavia S, Cheng JW, Lin RT.

Diagn Microbiol Infect Dis. 2018 Jan;90(1):67-69. doi: 10.1016/j.diagmicrobio.2017.09.010. Epub 2017 Oct 4. No abstract available.

PMID:
29132936
19.

Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles.

Fu S, Hiley L, Octavia S, Tanaka MM, Sintchenko V, Lan R.

Sci Rep. 2017 Aug 29;7(1):9733. doi: 10.1038/s41598-017-06079-1.

20.

Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection.

Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R.

Infect Genet Evol. 2017 Jul;51:17-20. doi: 10.1016/j.meegid.2017.03.004. Epub 2017 Mar 7.

PMID:
28279807
21.

Characterisation of the Bordetella pertussis secretome under different media.

Luu LDW, Octavia S, Zhong L, Raftery M, Sintchenko V, Lan R.

J Proteomics. 2017 Mar 31;158:43-51. doi: 10.1016/j.jprot.2017.02.010. Epub 2017 Feb 24.

PMID:
28242451
22.

Erratum: Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity.

Chung HK, Tay A, Octavia S, Chen J, Liu F, Ma R, Lan R, Riordan SM, Grimm MC, Zhang L.

Sci Rep. 2017 Feb 16;7:41113. doi: 10.1038/srep41113. No abstract available.

23.

Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study.

Jones M, Octavia S, Lammers G, Heller J, Lan R.

Environ Microbiol. 2017 May;19(5):1836-1844. doi: 10.1111/1462-2920.13679. Epub 2017 Feb 22.

PMID:
28127846
24.

Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium.

Fu S, Octavia S, Wang Q, Tanaka MM, Tay CY, Sintchenko V, Lan R.

Front Microbiol. 2016 Dec 26;7:2002. doi: 10.3389/fmicb.2016.02002. eCollection 2016.

25.

Whole-genome sequencing and comparative genomic analysis of Bordetella pertussis isolates from the 2007-2008 epidemic in Israel.

Octavia S, Wu SZ, Kaur S, Valinsky L, Marva E, Moran-Gilad J, Lan R.

J Infect. 2017 Feb;74(2):204-207. doi: 10.1016/j.jinf.2016.11.012. Epub 2016 Nov 30. No abstract available.

PMID:
27914992
26.

Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity.

Chung HK, Tay A, Octavia S, Chen J, Liu F, Ma R, Lan R, Riordan SM, Grimm MC, Zhang L.

Sci Rep. 2016 Dec 2;6:38442. doi: 10.1038/srep38442. Erratum in: Sci Rep. 2017 Feb 16;7:41113.

27.

SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes.

Chan CHS, Octavia S, Sintchenko V, Lan R.

Comput Biol Chem. 2016 Dec;65:178-184. doi: 10.1016/j.compbiolchem.2016.09.004. Epub 2016 Sep 9.

PMID:
27647159
28.

Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014.

Phillips A, Sotomayor C, Wang Q, Holmes N, Furlong C, Ward K, Howard P, Octavia S, Lan R, Sintchenko V.

BMC Microbiol. 2016 Sep 15;16:211. doi: 10.1186/s12866-016-0831-3.

29.

Better colonisation of newly emerged Bordetella pertussis in the co-infection mouse model study.

Safarchi A, Octavia S, Luu LD, Tay CY, Sintchenko V, Wood N, Marshall H, McIntyre P, Lan R.

Vaccine. 2016 Jul 25;34(34):3967-71. doi: 10.1016/j.vaccine.2016.06.052. Epub 2016 Jun 23.

PMID:
27346304
30.

US Gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China.

Luo Y, Octavia S, Jin D, Ye J, Miao Z, Jiang T, Xia S, Lan R.

J Infect. 2016 May;72(5):564-72. doi: 10.1016/j.jinf.2016.02.005. Epub 2016 Feb 23.

PMID:
26920786
31.

Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic.

Safarchi A, Octavia S, Wu SZ, Kaur S, Sintchenko V, Gilbert GL, Wood N, McIntyre P, Marshall H, Keil AD, Lan R.

J Infect. 2016 Apr;72(4):468-77. doi: 10.1016/j.jinf.2016.01.005. Epub 2016 Jan 27.

PMID:
26826518
32.

The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis.

Clarke M, McIntyre PB, Blyth CC, Wood N, Octavia S, Sintchenko V, Giles L, Quinn H, Hill V, Hanly G, Lan R, Marshall HS.

J Infect. 2016 Feb;72(2):171-8. doi: 10.1016/j.jinf.2015.11.004. Epub 2015 Dec 8.

PMID:
26675318
33.

Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model.

Safarchi A, Octavia S, Luu LD, Tay CY, Sintchenko V, Wood N, Marshall H, McIntyre P, Lan R.

Vaccine. 2015 Nov 17;33(46):6277-81. doi: 10.1016/j.vaccine.2015.09.064. Epub 2015 Oct 2.

PMID:
26432908
34.

Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage.

Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Nov;53(11):3507-14. doi: 10.1128/JCM.01733-15. Epub 2015 Aug 26.

35.

Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

Fu S, Octavia S, Tanaka MM, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Aug;53(8):2530-8. doi: 10.1128/JCM.03407-14. Epub 2015 May 27.

36.

Delineation of genetic relatedness and population structure of oral and enteric Campylobacter concisus strains by analysis of housekeeping genes.

Mahendran V, Octavia S, Demirbas OF, Sabrina S, Ma R, Lan R, Riordan SM, Grimm MC, Zhang L.

Microbiology. 2015 Aug;161(8):1600-12. doi: 10.1099/mic.0.000112. Epub 2015 May 22.

PMID:
26002953
37.

Characterization of a large novel phage-like plasmid in Salmonella enterica serovar Typhimurium.

Octavia S, Sara J, Lan R.

FEMS Microbiol Lett. 2015 Apr;362(8):fnv044. doi: 10.1093/femsle/fnv044. Epub 2015 Mar 20.

PMID:
25795590
38.

Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model.

Fung CC, Octavia S, Mooney AM, Lan R.

FEMS Microbiol Lett. 2015 Jan;362(3):1-5. doi: 10.1093/femsle/fnu045. Epub 2014 Dec 4.

39.

Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak.

Octavia S, Wang Q, Tanaka MM, Kaur S, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Apr;53(4):1063-71. doi: 10.1128/JCM.03235-14. Epub 2015 Jan 21.

40.

Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB).

Lam C, Octavia S, Sintchenko V, Gilbert GL, Lan R.

BMC Res Notes. 2014 Oct 15;7:727. doi: 10.1186/1756-0500-7-727.

41.

Global population structure and evolution of Bordetella pertussis and their relationship with vaccination.

Bart MJ, Harris SR, Advani A, Arakawa Y, Bottero D, Bouchez V, Cassiday PK, Chiang CS, Dalby T, Fry NK, Gaillard ME, van Gent M, Guiso N, Hallander HO, Harvill ET, He Q, van der Heide HG, Heuvelman K, Hozbor DF, Kamachi K, Karataev GI, Lan R, Lutyńska A, Maharjan RP, Mertsola J, Miyamura T, Octavia S, Preston A, Quail MA, Sintchenko V, Stefanelli P, Tondella ML, Tsang RS, Xu Y, Yao SM, Zhang S, Parkhill J, Mooi FR.

MBio. 2014 Apr 22;5(2):e01074. doi: 10.1128/mBio.01074-14.

42.

Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia.

Lam C, Octavia S, Ricafort L, Sintchenko V, Gilbert GL, Wood N, McIntyre P, Marshall H, Guiso N, Keil AD, Lawrence A, Robson J, Hogg G, Lan R.

Emerg Infect Dis. 2014 Apr;20(4):626-33. doi: 10.3201/eid2004.131478.

43.

Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka.

Dissanayake DR, Octavia S, Lan R.

Vet Microbiol. 2014 Jan 31;168(2-4):403-12. doi: 10.1016/j.vetmic.2013.11.028. Epub 2013 Dec 11.

PMID:
24388626
44.

Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types.

Pang S, Octavia S, Feng L, Liu B, Reeves PR, Lan R, Wang L.

BMC Genomics. 2013 Oct 20;14:718. doi: 10.1186/1471-2164-14-718.

45.

The prevalence and polymorphisms of zonula occluden toxin gene in multiple Campylobacter concisus strains isolated from saliva of patients with inflammatory bowel disease and controls.

Mahendran V, Tan YS, Riordan SM, Grimm MC, Day AS, Lemberg DA, Octavia S, Lan R, Zhang L.

PLoS One. 2013 Sep 23;8(9):e75525. doi: 10.1371/journal.pone.0075525. eCollection 2013.

46.

Population structure and evolution of non-O1/non-O139 Vibrio cholerae by multilocus sequence typing.

Octavia S, Salim A, Kurniawan J, Lam C, Leung Q, Ahsan S, Reeves PR, Nair GB, Lan R.

PLoS One. 2013 Jun 11;8(6):e65342. doi: 10.1371/journal.pone.0065342. Print 2013.

47.

Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China.

Luo Y, Ye J, Jin D, Ding G, Zhang Z, Mei L, Octavia S, Lan R.

BMC Microbiol. 2013 Mar 4;13:52. doi: 10.1186/1471-2180-13-52.

48.

Investigation of the enteric pathogenic potential of oral Campylobacter concisus strains isolated from patients with inflammatory bowel disease.

Ismail Y, Mahendran V, Octavia S, Day AS, Riordan SM, Grimm MC, Lan R, Lemberg D, Tran TA, Zhang L.

PLoS One. 2012;7(5):e38217. doi: 10.1371/journal.pone.0038217. Epub 2012 May 30.

49.

Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae.

Lam C, Octavia S, Reeves PR, Lan R.

BMC Microbiol. 2012 May 24;12:82. doi: 10.1186/1471-2180-12-82.

50.

Newly emerging clones of Bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010.

Octavia S, Sintchenko V, Gilbert GL, Lawrence A, Keil AD, Hogg G, Lan R.

J Infect Dis. 2012 Apr 15;205(8):1220-4. doi: 10.1093/infdis/jis178. Epub 2012 Mar 13.

PMID:
22416243

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