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Items: 46

1.

Characterization of spliced leader trans-splicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer.

Matsuo M, Katahata A, Satoh S, Matsuzaki M, Nomura M, Ishida KI, Inagaki Y, Obokata J.

PLoS One. 2018 Jul 19;13(7):e0200961. doi: 10.1371/journal.pone.0200961. eCollection 2018.

2.

The mutation nrpb1-A325V in the largest subunit of RNA polymerase II suppresses compromised growth of Arabidopsis plants deficient in a function of the general transcription factor IIF.

Babiychuk E, Hoang KT, Vandepoele K, Van De Slijke E, Geelen D, De Jaeger G, Obokata J, Kushnir S.

Plant J. 2017 Feb;89(4):730-745. doi: 10.1111/tpj.13417. Epub 2017 Feb 10.

3.

Evolution of Green Plants Accompanied Changes in Light-Harvesting Systems.

Kunugi M, Satoh S, Ihara K, Shibata K, Yamagishi Y, Kogame K, Obokata J, Takabayashi A, Tanaka A.

Plant Cell Physiol. 2016 Jun;57(6):1231-43. doi: 10.1093/pcp/pcw071. Epub 2016 Apr 6.

PMID:
27057002
4.

High REDOX RESPONSIVE TRANSCRIPTION FACTOR1 Levels Result in Accumulation of Reactive Oxygen Species in Arabidopsis thaliana Shoots and Roots.

Matsuo M, Johnson JM, Hieno A, Tokizawa M, Nomoto M, Tada Y, Godfrey R, Obokata J, Sherameti I, Yamamoto YY, Böhmer FD, Oelmüller R.

Mol Plant. 2015 Aug;8(8):1253-73. doi: 10.1016/j.molp.2015.03.011. Epub 2015 Apr 13.

5.

ppdb: plant promoter database version 3.0.

Hieno A, Naznin HA, Hyakumachi M, Sakurai T, Tokizawa M, Koyama H, Sato N, Nishiyama T, Hasebe M, Zimmer AD, Lang D, Reski R, Rensing SA, Obokata J, Yamamoto YY.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1188-92. doi: 10.1093/nar/gkt1027. Epub 2013 Nov 4.

6.

Pentatricopeptide repeat proteins involved in plant organellar RNA editing.

Yagi Y, Tachikawa M, Noguchi H, Satoh S, Obokata J, Nakamura T.

RNA Biol. 2013;10(9):1419-25. doi: 10.4161/rna.24908. Epub 2013 May 3.

7.

Characteristics of core promoter types with respect to gene structure and expression in Arabidopsis thaliana.

Yamamoto YY, Yoshioka Y, Hyakumachi M, Obokata J.

DNA Res. 2011 Oct;18(5):333-42. doi: 10.1093/dnares/dsr020. Epub 2011 Jul 10.

8.

Transcriptome analysis of respiration-responsive genes in Chlamydomonas reinhardtii: mitochondrial retrograde signaling coordinates the genes for cell proliferation with energy-producing metabolism.

Matsuo M, Hachisu R, Tabata S, Fukuzawa H, Obokata J.

Plant Cell Physiol. 2011 Feb;52(2):333-43. doi: 10.1093/pcp/pcq192. Epub 2010 Dec 11.

PMID:
21149298
9.

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis.

Yamamoto YY, Yoshitsugu T, Sakurai T, Seki M, Shinozaki K, Obokata J.

Plant J. 2009 Oct;60(2):350-62. doi: 10.1111/j.1365-313X.2009.03958.x. Epub 2009 Jun 29.

10.

Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches.

Takabayashi A, Ishikawa N, Obayashi T, Ishida S, Obokata J, Endo T, Sato F.

Plant J. 2009 Jan;57(2):207-19. doi: 10.1111/j.1365-313X.2008.03680.x. Epub 2008 Oct 25.

11.

Two RNA editing sites with cis-acting elements of moderate sequence identity are recognized by an identical site-recognition protein in tobacco chloroplasts.

Kobayashi Y, Matsuo M, Sakamoto K, Wakasugi T, Yamada K, Obokata J.

Nucleic Acids Res. 2008 Jan;36(1):311-8. Epub 2007 Nov 21.

12.

ppdb: a plant promoter database.

Yamamoto YY, Obokata J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D977-81. Epub 2007 Oct 18.

13.

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis.

Yamamoto YY, Ichida H, Abe T, Suzuki Y, Sugano S, Obokata J.

Nucleic Acids Res. 2007;35(18):6219-26. Epub 2007 Sep 12.

14.

Identification of plant promoter constituents by analysis of local distribution of short sequences.

Yamamoto YY, Ichida H, Matsui M, Obokata J, Sakurai T, Satou M, Seki M, Shinozaki K, Abe T.

BMC Genomics. 2007 Mar 8;8:67.

15.

Remote control of photosynthetic genes by the mitochondrial respiratory chain.

Matsuo M, Obokata J.

Plant J. 2006 Sep;47(6):873-82. Epub 2006 Aug 15. Erratum in: Plant J. 2006 Nov;48(4):645.

16.

In vitro selection of translational regulatory elements.

Nagao I, Obokata J.

Anal Biochem. 2006 Jul 1;354(1):1-7. Epub 2006 May 2.

PMID:
16707091
17.

[Posttranscriptional regulation and translation in chloroplasts].

Miyamoto T, Obokata J, Sugiura M.

Tanpakushitsu Kakusan Koso. 2005 Nov;50(14 Suppl):1853-6. Review. Japanese. No abstract available.

PMID:
16318337
18.

[Transfer of the chloroplast DNA to the nucleus].

Obokata J.

Tanpakushitsu Kakusan Koso. 2005 Nov;50(14 Suppl):1843-4. Review. Japanese. No abstract available.

PMID:
16318333
19.
20.

In vitro RNA editing systems from higher plant chloroplasts.

Hirose T, Miyamoto T, Obokata J, Sugiura M.

Methods Mol Biol. 2004;265:333-44.

PMID:
15103082
21.

A site-specific factor interacts directly with its cognate RNA editing site in chloroplast transcripts.

Miyamoto T, Obokata J, Sugiura M.

Proc Natl Acad Sci U S A. 2004 Jan 6;101(1):48-52. Epub 2003 Dec 23.

22.

Array-based analysis on tobacco plastid transcripts: preparation of a genomic microarray containing all genes and all intergenic regions.

Nakamura T, Furuhashi Y, Hasegawa K, Hashimoto H, Watanabe K, Obokata J, Sugita M, Sugiura M.

Plant Cell Physiol. 2003 Aug;44(8):861-7.

PMID:
12941879
25.

Polyribosome loading of spinach mRNAs for photosystem I subunits is controlled by photosynthetic electron transport.

Sherameti I, Nakamura M, Yamamoto YY, Pfannschmidt T, Obokata J, Oelmüller R.

Plant J. 2002 Dec;32(5):631-9.

29.

Light-responsive elements of the tobacco PSI-D gene are located both upstream and within the transcribed region.

Yamamoto YY, Kondo Y, Kato A, Tsuji H, Obokata J.

Plant J. 1997 Aug;12(2):255-65.

30.
31.

Cloning of a nuclear-encoded photosystem I gene, psaEb, in Nicotiana sylvestris.

Kubota T, Yamamoto YY, Obokata J.

Plant Physiol. 1995 Jul;108(3):1297-8. No abstract available.

32.

5'-leader of a photosystem I gene in Nicotiana sylvestris, psaDb, contains a translational enhancer.

Yamamoto YY, Tsuji H, Obokata J.

J Biol Chem. 1995 May 26;270(21):12466-70.

33.

Organization of the psaH gene family of photosystem I in Nicotiana sylvestris.

Nakamura M, Obokata J.

Plant Cell Physiol. 1994 Mar;35(2):297-302.

PMID:
8069492
34.

Microheterogeneity of PSI-E subunit of photosystem I in Nicotiana sylvestris.

Obokata J, Mikami K, Yamamoto Y, Hayashida N.

Plant Cell Physiol. 1994 Mar;35(2):203-9.

PMID:
8069490
35.

Structure and expression of a nuclear gene for the PSI-D subunit of photosystem I in Nicotiana sylvestris.

Yamamoto Y, Tsuji H, Obokata J.

Plant Mol Biol. 1993 Sep;22(6):985-94.

PMID:
8400141
36.

Molecular heterogeneity of photosystem I. psaD, psaE, psaF, psaH, and psaL are all present in isoforms in Nicotiana spp.

Obokata J, Mikami K, Hayashida N, Nakamura M, Sugiura M.

Plant Physiol. 1993 Aug;102(4):1259-67.

37.

Nucleotide sequence of cDNA clones encoding PSI-D2 protein of photosystem I in Nicotiana sylvestris.

Yamamoto Y, Tsuji H, Hayashida N, Inoue K, Obokata J.

Plant Mol Biol. 1991 Dec;17(6):1251-4. No abstract available.

PMID:
1932698
38.

Nucleotide sequence of a cDNA clone encoding a putative glycine-rich protein of 19.7 kDa in Nicotiana sylvestris.

Obokata J, Ohme M, Hayashida N.

Plant Mol Biol. 1991 Oct;17(4):953-5. No abstract available.

PMID:
1912512
39.

[Transformation of E. coli with polyethylene glycol].

Yamamoto Y, Obokata J.

Seikagaku. 1990 Dec;62(12):1513-4. Japanese. No abstract available.

PMID:
2086692
40.

Polymorphism of a photosystem I subunit caused by alloploidy in Nicotiana.

Obokata J, Mikami K, Hayashida N, Sugiura M.

Plant Physiol. 1990 Jan;92(1):273-5.

41.

Rapid splicing and stepwise processing of a transcript from the psbB operon in tobacco chloroplasts: determination of the intron sites in petB and petD.

Tanaka M, Obokata J, Chunwongse J, Shinozaki K, Sugiura M.

Mol Gen Genet. 1987 Oct;209(3):427-31.

PMID:
17193705
42.

[Preparation of etioplasts].

Obokata J.

Tanpakushitsu Kakusan Koso. 1987 Jul;(30 Suppl):86-91. Japanese. No abstract available.

PMID:
3509304
44.

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M.

EMBO J. 1986 Sep;5(9):2043-2049.

46.

The 5' part of the gene for ribosomal protein S12 is located 30 kbp downstream from its 3' part in tobacco chloroplast genome.

Torazawa K, Hayashida N, Obokata J, Shinozaki K, Sugiura M.

Nucleic Acids Res. 1986 Apr 11;14(7):3143. No abstract available.

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