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Items: 17

1.

De novo design of self-assembling helical protein filaments.

Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, De Yoreo J, Jacobs-Wagner C, Kollman J, Baker D.

Science. 2018 Nov 9;362(6415):705-709. doi: 10.1126/science.aau3775.

PMID:
30409885
2.

De novo design of a non-local β-sheet protein with high stability and accuracy.

Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D.

Nat Struct Mol Biol. 2018 Nov;25(11):1028-1034. doi: 10.1038/s41594-018-0141-6. Epub 2018 Oct 29.

PMID:
30374087
3.

Principles for designing proteins with cavities formed by curved β sheets.

Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D.

Science. 2017 Jan 13;355(6321):201-206. doi: 10.1126/science.aah7389.

4.

Computational design of a homotrimeric metalloprotein with a trisbipyridyl core.

Mills JH, Sheffler W, Ener ME, Almhjell PJ, Oberdorfer G, Pereira JH, Parmeggiani F, Sankaran B, Zwart PH, Baker D.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15012-15017. doi: 10.1073/pnas.1600188113. Epub 2016 Dec 8.

5.

Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.

Daniel B, Wallner S, Steiner B, Oberdorfer G, Kumar P, van der Graaff E, Roitsch T, Sensen CW, Gruber K, Macheroux P.

PLoS One. 2016 Jun 8;11(6):e0156892. doi: 10.1371/journal.pone.0156892. eCollection 2016.

6.

De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.

Boyken SE, Chen Z, Groves B, Langan RA, Oberdorfer G, Ford A, Gilmore JM, Xu C, DiMaio F, Pereira JH, Sankaran B, Seelig G, Zwart PH, Baker D.

Science. 2016 May 6;352(6286):680-7. doi: 10.1126/science.aad8865. Erratum in: Science. 2016 May 20;352(6288). pii: aag1318. doi: 10.1126/science.aag1318.

7.

The crystal structure of D-threonine aldolase from Alcaligenes xylosoxidans provides insight into a metal ion assisted PLP-dependent mechanism.

Uhl MK, Oberdorfer G, Steinkellner G, Riegler-Berket L, Mink D, van Assema F, Schürmann M, Gruber K.

PLoS One. 2015 Apr 17;10(4):e0124056. doi: 10.1371/journal.pone.0124056. eCollection 2015.

8.

High thermodynamic stability of parametrically designed helical bundles.

Huang PS, Oberdorfer G, Xu C, Pei XY, Nannenga BL, Rogers JM, DiMaio F, Gonen T, Luisi B, Baker D.

Science. 2014 Oct 24;346(6208):481-485. doi: 10.1126/science.1257481.

9.

Engineering V-type nerve agents detoxifying enzymes using computationally focused libraries.

Cherny I, Greisen P Jr, Ashani Y, Khare SD, Oberdorfer G, Leader H, Baker D, Tawfik DS.

ACS Chem Biol. 2013 Nov 15;8(11):2394-403. doi: 10.1021/cb4004892. Epub 2013 Oct 4.

PMID:
24041203
10.

Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis.

Ribitsch D, Yebra AO, Zitzenbacher S, Wu J, Nowitsch S, Steinkellner G, Greimel K, Doliska A, Oberdorfer G, Gruber CC, Gruber K, Schwab H, Stana-Kleinschek K, Acero EH, Guebitz GM.

Biomacromolecules. 2013 Jun 10;14(6):1769-76. doi: 10.1021/bm400140u. Epub 2013 May 29.

PMID:
23718548
11.

The structure of glycerol trinitrate reductase NerA from Agrobacterium radiobacter reveals the molecular reason for nitro- and ene-reductase activity in OYE homologues.

Oberdorfer G, Binter A, Wallner S, Durchschein K, Hall M, Faber K, Macheroux P, Gruber K.

Chembiochem. 2013 May 10;14(7):836-45. doi: 10.1002/cbic.201300136. Epub 2013 Apr 18.

12.

Vascular bioactivation of nitroglycerin by aldehyde dehydrogenase-2: reaction intermediates revealed by crystallography and mass spectrometry.

Lang BS, Gorren AC, Oberdorfer G, Wenzl MV, Furdui CM, Poole LB, Mayer B, Gruber K.

J Biol Chem. 2012 Nov 2;287(45):38124-34. doi: 10.1074/jbc.M112.371716. Epub 2012 Sep 17.

13.

Structural and functional characterization of NikO, an enolpyruvyl transferase essential in nikkomycin biosynthesis.

Oberdorfer G, Binter A, Ginj C, Macheroux P, Gruber K.

J Biol Chem. 2012 Sep 7;287(37):31427-36. doi: 10.1074/jbc.M112.352096. Epub 2012 Jul 18.

14.

Characterization of the PLP-dependent aminotransferase NikK from Streptomyces tendae and its putative role in nikkomycin biosynthesis.

Binter A, Oberdorfer G, Hofzumahaus S, Nerstheimer S, Altenbacher G, Gruber K, Macheroux P.

FEBS J. 2011 Nov;278(21):4122-35. doi: 10.1111/j.1742-4658.2011.08319.x. Epub 2011 Sep 28.

15.

Improved molecular replacement by density- and energy-guided protein structure optimization.

DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D.

Nature. 2011 May 26;473(7348):540-3. doi: 10.1038/nature09964. Epub 2011 May 1.

16.

Epoxide-hydrolase-initiated hydrolysis/rearrangement cascade of a methylene-interrupted bis-epoxide yields chiral THF moieties without involvement of a "cyclase".

Ueberbacher BT, Oberdorfer G, Gruber K, Faber K.

Chembiochem. 2009 Jul 6;10(10):1697-704. doi: 10.1002/cbic.200900176.

PMID:
19496106
17.

An algorithm for the deconvolution of mass spectroscopic patterns in isotope labeling studies. Evaluation for the hydrogen-deuterium exchange reaction in ketones.

Gruber CC, Oberdorfer G, Voss CV, Kremsner JM, Kappe CO, Kroutil W.

J Org Chem. 2007 Jul 20;72(15):5778-83. Epub 2007 Jun 20.

PMID:
17580907

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