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Items: 12

1.

Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource.

Nanan KK, Ocheltree C, Sturgill D, Mandler MD, Prigge M, Varma G, Oberdoerffer S.

Nucleic Acids Res. 2017 Dec 15;45(22):12780-12797. doi: 10.1093/nar/gkx900.

2.

Profiling Cytidine Acetylation with Specific Affinity and Reactivity.

Sinclair WR, Arango D, Shrimp JH, Zengeya TT, Thomas JM, Montgomery DC, Fox SD, Andresson T, Oberdoerffer S, Meier JL.

ACS Chem Biol. 2017 Dec 15;12(12):2922-2926. doi: 10.1021/acschembio.7b00734. Epub 2017 Oct 17.

PMID:
29039931
3.

Epigenomics meets splicing through the TETs and CTCF.

Marina RJ, Oberdoerffer S.

Cell Cycle. 2016 Jun 2;15(11):1397-9. doi: 10.1080/15384101.2016.1171650. Epub 2016 Apr 22. No abstract available.

4.

TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing.

Marina RJ, Sturgill D, Bailly MA, Thenoz M, Varma G, Prigge MF, Nanan KK, Shukla S, Haque N, Oberdoerffer S.

EMBO J. 2016 Feb 1;35(3):335-55. doi: 10.15252/embj.201593235. Epub 2015 Dec 28.

5.

Chromatin and splicing.

Haque N, Oberdoerffer S.

Methods Mol Biol. 2014;1126:97-113. doi: 10.1007/978-1-62703-980-2_7.

PMID:
24549658
6.

Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells.

Benson MJ, Aijö T, Chang X, Gagnon J, Pape UJ, Anantharaman V, Aravind L, Pursiheimo JP, Oberdoerffer S, Liu XS, Lahesmaa R, Lähdesmäki H, Rao A.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16252-7. doi: 10.1073/pnas.1214414109. Epub 2012 Sep 18.

7.

A conserved role for intragenic DNA methylation in alternative pre-mRNA splicing.

Oberdoerffer S.

Transcription. 2012 May-Jun;3(3):106-9. doi: 10.4161/trns.19816.

8.

Co-transcriptional regulation of alternative pre-mRNA splicing.

Shukla S, Oberdoerffer S.

Biochim Biophys Acta. 2012 Jul;1819(7):673-83. doi: 10.1016/j.bbagrm.2012.01.014. Epub 2012 Feb 2. Review.

9.

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.

Shukla S, Kavak E, Gregory M, Imashimizu M, Shutinoski B, Kashlev M, Oberdoerffer P, Sandberg R, Oberdoerffer S.

Nature. 2011 Nov 3;479(7371):74-9. doi: 10.1038/nature10442.

PMID:
21964334
10.

Dephosphorylation of the nuclear factor of activated T cells (NFAT) transcription factor is regulated by an RNA-protein scaffold complex.

Sharma S, Findlay GM, Bandukwala HS, Oberdoerffer S, Baust B, Li Z, Schmidt V, Hogan PG, Sacks DB, Rao A.

Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11381-6. doi: 10.1073/pnas.1019711108. Epub 2011 Jun 27. Erratum in: Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17235.

11.

Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL.

Oberdoerffer S, Moita LF, Neems D, Freitas RP, Hacohen N, Rao A.

Science. 2008 Aug 1;321(5889):686-91. doi: 10.1126/science.1157610. Epub 2008 Jul 10.

12.

Gene regulation and signal transduction in the immune system.

Horng T, Oberdoerffer S, Rao A.

Genome Biol. 2008;9(7):315. doi: 10.1186/gb-2008-9-7-315. Epub 2008 Jul 10.

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