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Items: 7

1.

Accessible, curated metagenomic data through ExperimentHub.

Pasolli E, Schiffer L, Manghi P, Renson A, Obenchain V, Truong DT, Beghini F, Malik F, Ramos M, Dowd JB, Huttenhower C, Morgan M, Segata N, Waldron L.

Nat Methods. 2017 Oct 31;14(11):1023-1024. doi: 10.1038/nmeth.4468. No abstract available.

2.

Genomic Annotation Resources in R/Bioconductor.

Carlson MR, Pagès H, Arora S, Obenchain V, Morgan M.

Methods Mol Biol. 2016;1418:67-90. doi: 10.1007/978-1-4939-3578-9_4.

PMID:
27008010
3.

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M.

Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Review.

4.

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.

Obenchain V, Lawrence M, Carey V, Gogarten S, Shannon P, Morgan M.

Bioinformatics. 2014 Jul 15;30(14):2076-8. doi: 10.1093/bioinformatics/btu168. Epub 2014 Mar 28.

5.

A hybrid EM and Monte Carlo EM algorithm and its application to analysis of transmission of infectious diseases.

Yang Y, Longini IM Jr, Halloran ME, Obenchain V.

Biometrics. 2012 Dec;68(4):1238-49. doi: 10.1111/j.1541-0420.2012.01757.x. Epub 2012 Apr 16.

6.

Risk prediction using genome-wide association studies.

Kooperberg C, LeBlanc M, Obenchain V.

Genet Epidemiol. 2010 Nov;34(7):643-52. doi: 10.1002/gepi.20509.

7.

FluTE, a publicly available stochastic influenza epidemic simulation model.

Chao DL, Halloran ME, Obenchain VJ, Longini IM Jr.

PLoS Comput Biol. 2010 Jan 29;6(1):e1000656. doi: 10.1371/journal.pcbi.1000656.

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