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The cecal microbiome of commercial broiler chickens varies significantly by season.

Oakley BB, Vasconcelos EJR, Diniz PPVP, Calloway KN, Richardson E, Meinersmann RJ, Cox NA, Berrang ME.

Poult Sci. 2018 Jul 17. doi: 10.3382/ps/pey214. [Epub ahead of print]


Characterization of two glycosyl hydrolases, putative prophage endolysins, that target Clostridium perfringens.

Swift SM, Waters JJ, Rowley DT, Oakley BB, Donovan DM.

FEMS Microbiol Lett. 2018 Jul 13. doi: 10.1093/femsle/fny179. [Epub ahead of print]


Molecular Characterization of Tandem Repeat Protein 36 Gene of Ehrlichia canis Detected in Naturally Infected Dogs from Peru.

Geiger J, Morton BA, Vasconcelos EJR, Tngrian M, Kachani M, Barrón EA, Gavidia CM, Gilman RH, Angulo NP, Lerner R, Tamerin S, Mirrashed H, Oakley B, Diniz PPVP.

Am J Trop Med Hyg. 2018 Jun 25. doi: 10.4269/ajtmh.17-0776. [Epub ahead of print]


Assessing Cat Flea Microbiomes in Northern and Southern California by 16S rRNA Next-Generation Sequencing.

Vasconcelos EJR, Billeter SA, Jett LA, Meinersmann RJ, Barr MC, Diniz PPVP, Oakley BB.

Vector Borne Zoonotic Dis. 2018 Jun 12. doi: 10.1089/vbz.2018.2282. [Epub ahead of print]


New multi-marker strains and complementing genes for Aspergillus nidulans molecular biology.

Dohn JW Jr, Grubbs AW, Oakley CE, Oakley BR.

Fungal Genet Biol. 2018 Feb;111:1-6. doi: 10.1016/j.fgb.2018.01.003. Epub 2018 Jan 5.


A novel bi-domain plant defensin MtDef5 with potent broad-spectrum antifungal activity binds to multiple phospholipids and forms oligomers.

Islam KT, Velivelli SLS, Berg RH, Oakley B, Shah DM.

Sci Rep. 2017 Nov 23;7(1):16157. doi: 10.1038/s41598-017-16508-w.


The front-line general surgery consultant as a new model of emergency care.

Navarro AP, Hardy E, Oakley B, Mohamed E, Welch NT, Parsons SL.

Ann R Coll Surg Engl. 2017 Sep;99(7):550-554. doi: 10.1308/rcsann.2017.0081. Epub 2017 Jul 6.


A cryptic pigment biosynthetic pathway uncovered by heterologous expression is essential for conidial development in Pestalotiopsis fici.

Zhang P, Wang X, Fan A, Zheng Y, Liu X, Wang S, Zou H, Oakley BR, Keller NP, Yin WB.

Mol Microbiol. 2017 Aug;105(3):469-483. doi: 10.1111/mmi.13711. Epub 2017 Jun 6.


The fungal natural product azaphilone-9 binds to HuR and inhibits HuR-RNA interaction in vitro.

Kaur K, Wu X, Fields JK, Johnson DK, Lan L, Pratt M, Somoza AD, Wang CCC, Karanicolas J, Oakley BR, Xu L, De Guzman RN.

PLoS One. 2017 Apr 17;12(4):e0175471. doi: 10.1371/journal.pone.0175471. eCollection 2017.


Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape.

King HC, Khera-Butler T, James P, Oakley BB, Erenso G, Aseffa A, Knight R, Wellington EM, Courtenay O.

PLoS One. 2017 Mar 23;12(3):e0173811. doi: 10.1371/journal.pone.0173811. eCollection 2017.


Variation in Campylobacter Multilocus Sequence Typing Subtypes from Chickens as Detected on Three Plating Media.

Berrang ME, Ladely SR, Meinersmann RJ, Line JE, Oakley BB, Cox NA.

J Food Prot. 2016 Nov;79(11):1986-1989. doi: 10.4315/0362-028X.JFP-16-188.


Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0.


Does achieving the best practice tariff improve outcomes in hip fracture patients? An observational cohort study.

Oakley B, Nightingale J, Moran CG, Moppett IK.

BMJ Open. 2017 Feb 6;7(2):e014190. doi: 10.1136/bmjopen-2016-014190.


Overexpression of a three-gene conidial pigment biosynthetic pathway in Aspergillus nidulans reveals the first NRPS known to acetylate tryptophan.

Sung CT, Chang SL, Entwistle R, Ahn G, Lin TS, Petrova V, Yeh HH, Praseuth MB, Chiang YM, Oakley BR, Wang CCC.

Fungal Genet Biol. 2017 Apr;101:1-6. doi: 10.1016/j.fgb.2017.01.006. Epub 2017 Jan 17.


Implementing an electronic patient handover system.

Oakley B, Hunter JB.

Br J Hosp Med (Lond). 2017 Jan 2;78(1):16-19. doi: 10.12968/hmed.2017.78.1.16.


Discovery of McrA, a master regulator of Aspergillus secondary metabolism.

Oakley CE, Ahuja M, Sun WW, Entwistle R, Akashi T, Yaegashi J, Guo CJ, Cerqueira GC, Russo Wortman J, Wang CC, Chiang YM, Oakley BR.

Mol Microbiol. 2017 Jan;103(2):347-365. doi: 10.1111/mmi.13562. Epub 2016 Nov 14.


Theory of mind is not theory of emotion: A cautionary note on the Reading the Mind in the Eyes Test.

Oakley BFM, Brewer R, Bird G, Catmur C.

J Abnorm Psychol. 2016 Aug;125(6):818-823. doi: 10.1037/abn0000182.


Achieving long term survival in oesophagectomy patients aged over 75.

Oakley B, Lamb C, Vohra R, Catton J.

Ann Med Surg (Lond). 2016 Jun 13;9:15-21. doi: 10.1016/j.amsu.2016.05.016. eCollection 2016 Aug.


Characterizing relationships among fecal indicator bacteria, microbial source tracking markers, and associated waterborne pathogen occurrence in stream water and sediments in a mixed land use watershed.

Bradshaw JK, Snyder BJ, Oladeinde A, Spidle D, Berrang ME, Meinersmann RJ, Oakley B, Sidle RC, Sullivan K, Molina M.

Water Res. 2016 Sep 15;101:498-509. doi: 10.1016/j.watres.2016.05.014. Epub 2016 May 13.


Resistance Gene-Guided Genome Mining: Serial Promoter Exchanges in Aspergillus nidulans Reveal the Biosynthetic Pathway for Fellutamide B, a Proteasome Inhibitor.

Yeh HH, Ahuja M, Chiang YM, Oakley CE, Moore S, Yoon O, Hajovsky H, Bok JW, Keller NP, Wang CC, Oakley BR.

ACS Chem Biol. 2016 Aug 19;11(8):2275-84. doi: 10.1021/acschembio.6b00213. Epub 2016 Jun 21.


Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions.

Wong K, Shaw TI, Oladeinde A, Glenn TC, Oakley B, Molina M.

Front Microbiol. 2016 Apr 13;7:500. doi: 10.3389/fmicb.2016.00500. eCollection 2016.


Onychomycosis and its Chemotherapy.

Basha A, Basha F, Ali SK, Hanson PR, Oakley BR, Hajovsky H, Mitscher LA.

Curr Med Chem. 2016 May 27;23(16):1609-24. Review.


Development of Genetic Dereplication Strains in Aspergillus nidulans Results in the Discovery of Aspercryptin.

Chiang YM, Ahuja M, Oakley CE, Entwistle R, Asokan A, Zutz C, Wang CC, Oakley BR.

Angew Chem Int Ed Engl. 2016 Jan 26;55(5):1662-5. doi: 10.1002/anie.201507097. Epub 2015 Nov 13.


Genome Sequence of a Urease-Positive Campylobacter lari Strain.

Meinersmann RJ, Bono JL, Lindsey RL, Genzlinger LL, Loparev VN, Oakley BB.

Genome Announc. 2015 Oct 15;3(5). pii: e01191-15. doi: 10.1128/genomeA.01191-15.


Spatial regulation of a common precursor from two distinct genes generates metabolite diversity.

Guo CJ, Sun WW, Bruno KS, Oakley BR, Keller NP, Wang CCC.

Chem Sci. 2015 Oct 1;6(10):5913-5921. doi: 10.1039/c5sc01058f. Epub 2015 Jul 13.


γ-Tubulin complexes in microtubule nucleation and beyond.

Oakley BR, Paolillo V, Zheng Y.

Mol Biol Cell. 2015 Sep 1;26(17):2957-62. doi: 10.1091/mbc.E14-11-1514.


The Aspergillus nidulans bimC4 mutation provides an excellent tool for identification of kinesin-14 inhibitors.

Wang B, Li K, Jin M, Qiu R, Liu B, Oakley BR, Xiang X.

Fungal Genet Biol. 2015 Sep;82:51-5. doi: 10.1016/j.fgb.2015.06.005. Epub 2015 Jun 24.


A Thermophilic Phage Endolysin Fusion to a Clostridium perfringens-Specific Cell Wall Binding Domain Creates an Anti-Clostridium Antimicrobial with Improved Thermostability.

Swift SM, Seal BS, Garrish JK, Oakley BB, Hiett K, Yeh HY, Woolsey R, Schegg KM, Line JE, Donovan DM.

Viruses. 2015 Jun 12;7(6):3019-34. doi: 10.3390/v7062758.


Azaphilones inhibit tau aggregation and dissolve tau aggregates in vitro.

Paranjape SR, Riley AP, Somoza AD, Oakley CE, Wang CC, Prisinzano TE, Oakley BR, Gamblin TC.

ACS Chem Neurosci. 2015 May 20;6(5):751-60. doi: 10.1021/acschemneuro.5b00013. Epub 2015 Apr 15.


Comparative analysis of the intestinal bacterial and RNA viral communities from sentinel birds placed on selected broiler chicken farms.

Day JM, Oakley BB, Seal BS, Zsak L.

PLoS One. 2015 Jan 30;10(1):e0117210. doi: 10.1371/journal.pone.0117210. eCollection 2015.


Successional changes in the chicken cecal microbiome during 42 days of growth are independent of organic acid feed additives.

Oakley BB, Buhr RJ, Ritz CW, Kiepper BH, Berrang ME, Seal BS, Cox NA.

BMC Vet Res. 2014 Nov 27;10:282. doi: 10.1186/s12917-014-0282-8.


Spatial regulation of the spindle assembly checkpoint and anaphase-promoting complex in Aspergillus nidulans.

Edgerton H, Paolillo V, Oakley BR.

Mol Microbiol. 2015 Feb;95(3):442-57. doi: 10.1111/mmi.12871. Epub 2014 Dec 30.


The chicken gastrointestinal microbiome.

Oakley BB, Lillehoj HS, Kogut MH, Kim WK, Maurer JJ, Pedroso A, Lee MD, Collett SR, Johnson TJ, Cox NA.

FEMS Microbiol Lett. 2014 Nov;360(2):100-12. doi: 10.1111/1574-6968.12608. Epub 2014 Oct 13. Review.


Reducing hospital ICU noise: a behavior-based approach.

Konkani A, Oakley B, Penprase B.

J Healthc Eng. 2014;5(2):229-46. doi: 10.1260/2040-2295.5.2.229.


Sampling by sponge wipe or skin excision for recovery of inoculated Salmonella and Campylobacter from defeathered broiler carcasses.

Berrang ME, Cox NA, Oakley BB.

J Food Prot. 2014 May;77(5):824-7. doi: 10.4315/0362-028X.JFP-13-403.


Variation of color discrimination across the life span.

Paramei GV, Oakley B.

J Opt Soc Am A Opt Image Sci Vis. 2014 Apr 1;31(4):A375-84. doi: 10.1364/JOSAA.31.00A375.


Rational domain swaps reveal insights about chain length control by ketosynthase domains in fungal nonreducing polyketide synthases.

Liu T, Sanchez JF, Chiang YM, Oakley BR, Wang CC.

Org Lett. 2014 Mar 21;16(6):1676-9. doi: 10.1021/ol5003384. Epub 2014 Mar 5.


Metabolic flexibility as a major predictor of spatial distribution in microbial communities.

Carbonero F, Oakley BB, Purdy KJ.

PLoS One. 2014 Jan 21;9(1):e85105. doi: 10.1371/journal.pone.0085105. eCollection 2014.


Inhibition of Tau aggregation by three Aspergillus nidulans secondary metabolites: 2,ω-dihydroxyemodin, asperthecin, and asperbenzaldehyde.

Paranjape SR, Chiang YM, Sanchez JF, Entwistle R, Wang CC, Oakley BR, Gamblin TC.

Planta Med. 2014 Jan;80(1):77-85. doi: 10.1055/s-0033-1360180. Epub 2014 Jan 10.


Do higher dispositions for empathy predispose males toward careers in nursing? A descriptive correlational design.

Penprase B, Oakley B, Ternes R, Driscoll D.

Nurs Forum. 2015 Jan-Mar;50(1):1-8. doi: 10.1111/nuf.12058. Epub 2014 Jan 3. Review.


Recent advances in genome mining of secondary metabolite biosynthetic gene clusters and the development of heterologous expression systems in Aspergillus nidulans.

Yaegashi J, Oakley BR, Wang CC.

J Ind Microbiol Biotechnol. 2014 Feb;41(2):433-42. doi: 10.1007/s10295-013-1386-z. Epub 2013 Dec 17. Review.


Recent progress in the chemotherapy of human fungal diseases. Emphasis on 1,3-β-glucan synthase and chitin synthase inhibitors.

Basha A, Basha F, Ali SK, Hanson PR, Mitscher LA, Oakley BR.

Curr Med Chem. 2013;20(38):4859-87. Review.


Can probiotics improve the environmental microbiome and resistome of commercial poultry production?

Pedroso AA, Hurley-Bacon AL, Zedek AS, Kwan TW, Jordan AP, Avellaneda G, Hofacre CL, Oakley BB, Collett SR, Maurer JJ, Lee MD.

Int J Environ Res Public Health. 2013 Sep 25;10(10):4534-59. doi: 10.3390/ijerph10104534.


Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity.

Pontiroli A, Khera TT, Oakley BB, Mason S, Dowd SE, Travis ER, Erenso G, Aseffa A, Courtenay O, Wellington EM.

PLoS One. 2013 Jul 18;8(7):e68648. doi: 10.1371/journal.pone.0068648. Print 2013.


Concepts and implications of altruism bias and pathological altruism.

Oakley BA.

Proc Natl Acad Sci U S A. 2013 Jun 18;110 Suppl 2:10408-15. doi: 10.1073/pnas.1302547110. Epub 2013 Jun 10.


Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages.

Meinersmann RJ, Lindsey RL, Bono JL, Smith TP, Oakley BB.

Appl Environ Microbiol. 2013 Aug;79(16):4806-14. doi: 10.1128/AEM.01259-13. Epub 2013 Jun 7.


Molecular genetic characterization of the biosynthesis cluster of a prenylated isoindolinone alkaloid aspernidine A in Aspergillus nidulans.

Yaegashi J, Praseuth MB, Tyan SW, Sanchez JF, Entwistle R, Chiang YM, Oakley BR, Wang CC.

Org Lett. 2013 Jun 7;15(11):2862-5. doi: 10.1021/ol401187b. Epub 2013 May 24.


An efficient system for heterologous expression of secondary metabolite genes in Aspergillus nidulans.

Chiang YM, Oakley CE, Ahuja M, Entwistle R, Schultz A, Chang SL, Sung CT, Wang CC, Oakley BR.

J Am Chem Soc. 2013 May 22;135(20):7720-31. doi: 10.1021/ja401945a. Epub 2013 May 9.

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