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Items: 1 to 50 of 66

1.

Degradation of recombinant proteins by Chinese hamster ovary host cell proteases is prevented by matriptase-1 knockout.

Laux H, Romand S, Nuciforo S, Farady CJ, Tapparel J, Buechmann-Moeller S, Sommer B, Oakeley EJ, Bodendorf U.

Biotechnol Bioeng. 2018 Oct;115(10):2530-2540. doi: 10.1002/bit.26731. Epub 2018 Jun 29.

PMID:
29777593
2.

An Activating Janus Kinase-3 Mutation Is Associated with Cytotoxic T Lymphocyte Antigen-4-Dependent Immune Dysregulation Syndrome.

Sic H, Speletas M, Cornacchione V, Seidl M, Beibel M, Linghu B, Yang F, Sevdali E, Germenis AE, Oakeley EJ, Vangrevelinghe E, Sailer AW, Traggiai E, Gram H, Eibel H.

Front Immunol. 2017 Dec 15;8:1824. doi: 10.3389/fimmu.2017.01824. eCollection 2017.

3.

Landscape of Genomics Technology Platforms in Switzerland.

Descombes P, Oakeley EJ.

Chimia (Aarau). 2016 Dec 21;70(12):883-888. doi: 10.2533/chimia.2016.883. Review.

PMID:
28661362
4.

Duplicated Enhancer Region Increases Expression of CTSB and Segregates with Keratolytic Winter Erythema in South African and Norwegian Families.

Ngcungcu T, Oti M, Sitek JC, Haukanes BI, Linghu B, Bruccoleri R, Stokowy T, Oakeley EJ, Yang F, Zhu J, Sultan M, Schalkwijk J, van Vlijmen-Willems IMJJ, von der Lippe C, Brunner HG, Ersland KM, Grayson W, Buechmann-Moller S, Sundnes O, Nirmala N, Morgan TM, van Bokhoven H, Steen VM, Hull PR, Szustakowski J, Staedtler F, Zhou H, Fiskerstrand T, Ramsay M.

Am J Hum Genet. 2017 May 4;100(5):737-750. doi: 10.1016/j.ajhg.2017.03.012. Epub 2017 Apr 27.

5.

Mutations in MAPKBP1 Cause Juvenile or Late-Onset Cilia-Independent Nephronophthisis.

Macia MS, Halbritter J, Delous M, Bredrup C, Gutter A, Filhol E, Mellgren AEC, Leh S, Bizet A, Braun DA, Gee HY, Silbermann F, Henry C, Krug P, Bole-Feysot C, Nitschké P, Joly D, Nicoud P, Paget A, Haugland H, Brackmann D, Ahmet N, Sandford R, Cengiz N, Knappskog PM, Boman H, Linghu B, Yang F, Oakeley EJ, Saint Mézard P, Sailer AW, Johansson S, Rødahl E, Saunier S, Hildebrandt F, Benmerah A.

Am J Hum Genet. 2017 Feb 2;100(2):372. doi: 10.1016/j.ajhg.2017.01.025. No abstract available.

6.

Mutations in MAPKBP1 Cause Juvenile or Late-Onset Cilia-Independent Nephronophthisis.

Macia MS, Halbritter J, Delous M, Bredrup C, Gutter A, Filhol E, Mellgren AEC, Leh S, Bizet A, Braun DA, Gee HY, Silbermann F, Henry C, Krug P, Bole-Feysot C, Nitschké P, Joly D, Nicoud P, Paget A, Haugland H, Brackmann D, Ahmet N, Sandford R, Cengiz N, Knappskog PM, Boman H, Linghu B, Yang F, Oakeley EJ, Saint Mézard P, Sailer AW, Johansson S, Rødahl E, Saunier S, Hildebrandt F, Benmerah A.

Am J Hum Genet. 2017 Feb 2;100(2):323-333. doi: 10.1016/j.ajhg.2016.12.011. Epub 2017 Jan 12. Erratum in: Am J Hum Genet. 2017 Feb 2;100(2):372.

7.

CGG Repeat-Induced FMR1 Silencing Depends on the Expansion Size in Human iPSCs and Neurons Carrying Unmethylated Full Mutations.

Brykczynska U, Pecho-Vrieseling E, Thiemeyer A, Klein J, Fruh I, Doll T, Manneville C, Fuchs S, Iazeolla M, Beibel M, Roma G, Naumann U, Kelley N, Oakeley EJ, Mueller M, Gomez-Mancilla B, Bühler M, Tabolacci E, Chiurazzi P, Neri G, Bouwmeester T, Di Giorgio FP, Fodor BD.

Stem Cell Reports. 2016 Dec 13;7(6):1059-1071. doi: 10.1016/j.stemcr.2016.10.004. Epub 2016 Nov 10.

8.

High Throughput Random Mutagenesis and Single Molecule Real Time Sequencing of the Muscle Nicotinic Acetylcholine Receptor.

Groot-Kormelink PJ, Ferrand S, Kelley N, Bill A, Freuler F, Imbert PE, Marelli A, Gerwin N, Sivilotti LG, Miraglia L, Orth AP, Oakeley EJ, Schopfer U, Siehler S.

PLoS One. 2016 Sep 20;11(9):e0163129. doi: 10.1371/journal.pone.0163129. eCollection 2016.

9.

Mutations in TRAF3IP1/IFT54 reveal a new role for IFT proteins in microtubule stabilization.

Bizet AA, Becker-Heck A, Ryan R, Weber K, Filhol E, Krug P, Halbritter J, Delous M, Lasbennes MC, Linghu B, Oakeley EJ, Zarhrate M, Nitschké P, Garfa-Traore M, Serluca F, Yang F, Bouwmeester T, Pinson L, Cassuto E, Dubot P, Elshakhs NA, Sahel JA, Salomon R, Drummond IA, Gubler MC, Antignac C, Chibout S, Szustakowski JD, Hildebrandt F, Lorentzen E, Sailer AW, Benmerah A, Saint-Mezard P, Saunier S.

Nat Commun. 2015 Oct 21;6:8666. doi: 10.1038/ncomms9666.

10.

Molecular mechanisms of D-cycloserine in facilitating fear extinction: insights from RNAseq.

Malan-Müller S, Fairbairn L, Daniels WM, Dashti MJ, Oakeley EJ, Altorfer M, Kidd M, Seedat S, Gamieldien J, Hemmings SM.

Metab Brain Dis. 2016 Feb;31(1):135-56. doi: 10.1007/s11011-015-9727-4. Epub 2015 Sep 23.

PMID:
26400817
11.

Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi.

Gutjahr C, Sawers RJ, Marti G, Andrés-Hernández L, Yang SY, Casieri L, Angliker H, Oakeley EJ, Wolfender JL, Abreu-Goodger C, Paszkowski U.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6754-9. doi: 10.1073/pnas.1504142112. Epub 2015 May 6.

12.

Decatransin, a new natural product inhibiting protein translocation at the Sec61/SecYEG translocon.

Junne T, Wong J, Studer C, Aust T, Bauer BW, Beibel M, Bhullar B, Bruccoleri R, Eichenberger J, Estoppey D, Hartmann N, Knapp B, Krastel P, Melin N, Oakeley EJ, Oberer L, Riedl R, Roma G, Schuierer S, Petersen F, Tallarico JA, Rapoport TA, Spiess M, Hoepfner D.

J Cell Sci. 2015 Mar 15;128(6):1217-29. doi: 10.1242/jcs.165746. Epub 2015 Jan 22.

13.

Decreased expression of genes associated with memory and x-linked mental retardation in boys with non-syndromic cryptorchidism and high infertility risk.

Hadziselimovic F, Hadziselimovic NO, Demougin P, Oakeley EJ.

Mol Syndromol. 2014 Feb;5(2):76-80. doi: 10.1159/000357931. Epub 2014 Jan 29.

14.

High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions.

Hoepfner D, Helliwell SB, Sadlish H, Schuierer S, Filipuzzi I, Brachat S, Bhullar B, Plikat U, Abraham Y, Altorfer M, Aust T, Baeriswyl L, Cerino R, Chang L, Estoppey D, Eichenberger J, Frederiksen M, Hartmann N, Hohendahl A, Knapp B, Krastel P, Melin N, Nigsch F, Oakeley EJ, Petitjean V, Petersen F, Riedl R, Schmitt EK, Staedtler F, Studer C, Tallarico JA, Wetzel S, Fishman MC, Porter JA, Movva NR.

Microbiol Res. 2014 Feb-Mar;169(2-3):107-20. doi: 10.1016/j.micres.2013.11.004. Epub 2013 Dec 1.

15.

Identification of the C3a receptor (C3AR1) as the target of the VGF-derived peptide TLQP-21 in rodent cells.

Hannedouche S, Beck V, Leighton-Davies J, Beibel M, Roma G, Oakeley EJ, Lannoy V, Bernard J, Hamon J, Barbieri S, Preuss I, Lasbennes MC, Sailer AW, Suply T, Seuwen K, Parker CN, Bassilana F.

J Biol Chem. 2013 Sep 20;288(38):27434-43. doi: 10.1074/jbc.M113.497214. Epub 2013 Aug 12.

16.

LMX1B mutations cause hereditary FSGS without extrarenal involvement.

Boyer O, Woerner S, Yang F, Oakeley EJ, Linghu B, Gribouval O, Tête MJ, Duca JS, Klickstein L, Damask AJ, Szustakowski JD, Heibel F, Matignon M, Baudouin V, Chantrel F, Champigneulle J, Martin L, Nitschké P, Gubler MC, Johnson KJ, Chibout SD, Antignac C.

J Am Soc Nephrol. 2013 Jul;24(8):1216-22. doi: 10.1681/ASN.2013020171. Epub 2013 May 16.

17.

Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome.

Thomson JP, Lempiäinen H, Hackett JA, Nestor CE, Müller A, Bolognani F, Oakeley EJ, Schübeler D, Terranova R, Reinhardt D, Moggs JG, Meehan RR.

Genome Biol. 2012 Oct 3;13(10):R93. doi: 10.1186/gb-2012-13-10-r93.

18.

The virtuous technology cycle concept and its application in next-generation sequencing.

Pluess-Li Y, Bongiovanni S, Oakeley EJ, Johnson KJ, Staedtler F.

Drug Discov Today. 2012 Sep;17(17-18):1015-22. doi: 10.1016/j.drudis.2012.04.003. Epub 2012 Apr 12. Review.

PMID:
22521661
19.

Deficient expression of genes involved in the endogenous defense system against transposons in cryptorchid boys with impaired mini-puberty.

Hadziselimovic F, Hadziselimovic NO, Demougin P, Krey G, Oakeley EJ.

Sex Dev. 2011;5(6):287-93. doi: 10.1159/000335188. Epub 2012 Jan 5.

PMID:
22223142
20.

DNA-binding factors shape the mouse methylome at distal regulatory regions.

Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, van Nimwegen E, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK, Schübeler D.

Nature. 2011 Dec 14;480(7378):490-5. doi: 10.1038/nature10716. Erratum in: Nature. 2012 Apr 26;484(7395):550. van Nimwegen, Erik [added].

PMID:
22170606
21.

Human cytomegalovirus escapes a naturally occurring neutralizing antibody by incorporating it into assembling virions.

Manley K, Anderson J, Yang F, Szustakowski J, Oakeley EJ, Compton T, Feire AL.

Cell Host Microbe. 2011 Sep 15;10(3):197-209. doi: 10.1016/j.chom.2011.07.010.

22.

Testicular gene expression in cryptorchid boys at risk of azoospermia.

Hadziselimovic F, Hadziselimovic NO, Demougin P, Oakeley EJ.

Sex Dev. 2011;5(2):49-59. doi: 10.1159/000323955. Epub 2011 Feb 5.

23.

Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing.

Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, Stadler MB, Schübeler D.

Nat Struct Mol Biol. 2010 Jul;17(7):894-900. doi: 10.1038/nsmb.1825. Epub 2010 Jun 20.

PMID:
20562853
24.

Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa.

Brykczynska U, Hisano M, Erkek S, Ramos L, Oakeley EJ, Roloff TC, Beisel C, Schübeler D, Stadler MB, Peters AH.

Nat Struct Mol Biol. 2010 Jun;17(6):679-87. doi: 10.1038/nsmb.1821. Epub 2010 May 16.

PMID:
20473313
25.

Targeting fibroblast growth factor receptors blocks PI3K/AKT signaling, induces apoptosis, and impairs mammary tumor outgrowth and metastasis.

Dey JH, Bianchi F, Voshol J, Bonenfant D, Oakeley EJ, Hynes NE.

Cancer Res. 2010 May 15;70(10):4151-62. doi: 10.1158/0008-5472.CAN-09-4479. Epub 2010 May 11.

26.

Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome.

Schwaiger M, Kohler H, Oakeley EJ, Stadler MB, Schübeler D.

Genome Res. 2010 Jun;20(6):771-80. doi: 10.1101/gr.101790.109. Epub 2010 Apr 30.

27.

Decreased expression of FGFR1, SOS1, RAF1 genes in cryptorchidism.

Hadziselimovic NO, de Geyter Ch, Demougin P, Oakeley EJ, Hadziselimovic F.

Urol Int. 2010;84(3):353-61. doi: 10.1159/000288242. Epub 2010 Apr 13.

28.

Transcription factor site dependencies in human, mouse and rat genomes.

Tomovic A, Stadler M, Oakeley EJ.

BMC Bioinformatics. 2009 Oct 16;10:339. doi: 10.1186/1471-2105-10-339.

29.

EGR4 is a master gene responsible for fertility in cryptorchidism.

Hadziselimovic F, Hadziselimovic NO, Demougin P, Krey G, Hoecht B, Oakeley EJ.

Sex Dev. 2009;3(5):253-63. doi: 10.1159/000249147. Epub 2009 Oct 14.

30.

Overestimation of alternative splicing caused by variable probe characteristics in exon arrays.

Gaidatzis D, Jacobeit K, Oakeley EJ, Stadler MB.

Nucleic Acids Res. 2009 Sep;37(16):e107. doi: 10.1093/nar/gkp508. Epub 2009 Jun 15.

31.

WNT signaling enhances breast cancer cell motility and blockade of the WNT pathway by sFRP1 suppresses MDA-MB-231 xenograft growth.

Matsuda Y, Schlange T, Oakeley EJ, Boulay A, Hynes NE.

Breast Cancer Res. 2009;11(3):R32. doi: 10.1186/bcr2317. Epub 2009 May 27.

32.

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome.

Schwaiger M, Stadler MB, Bell O, Kohler H, Oakeley EJ, Schübeler D.

Genes Dev. 2009 Mar 1;23(5):589-601. doi: 10.1101/gad.511809.

33.

Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.

Favory JJ, Stec A, Gruber H, Rizzini L, Oravecz A, Funk M, Albert A, Cloix C, Jenkins GI, Oakeley EJ, Seidlitz HK, Nagy F, Ulm R.

EMBO J. 2009 Mar 4;28(5):591-601. doi: 10.1038/emboj.2009.4. Epub 2009 Jan 22.

34.

Computational structural analysis: multiple proteins bound to DNA.

Tomovic A, Oakeley EJ.

PLoS One. 2008 Sep 19;3(9):e3243. doi: 10.1371/journal.pone.0003243.

35.

Transcriptional profiling of myotubes from patients with type 2 diabetes: no evidence for a primary defect in oxidative phosphorylation genes.

Frederiksen CM, Højlund K, Hansen L, Oakeley EJ, Hemmings B, Abdallah BM, Brusgaard K, Beck-Nielsen H, Gaster M.

Diabetologia. 2008 Nov;51(11):2068-77. doi: 10.1007/s00125-008-1122-9. Epub 2008 Aug 22.

PMID:
18719883
36.

Interferon signaling and treatment outcome in chronic hepatitis C.

Sarasin-Filipowicz M, Oakeley EJ, Duong FH, Christen V, Terracciano L, Filipowicz W, Heim MH.

Proc Natl Acad Sci U S A. 2008 May 13;105(19):7034-9. doi: 10.1073/pnas.0707882105. Epub 2008 May 8.

37.

Quality estimation of multiple sequence alignments by Bayesian hypothesis testing.

Tomovic A, Oakeley EJ.

Bioinformatics. 2007 Sep 15;23(18):2488-90. Epub 2007 Jul 27.

PMID:
17660204
38.

Position dependencies in transcription factor binding sites.

Tomovic A, Oakeley EJ.

Bioinformatics. 2007 Apr 15;23(8):933-41. Epub 2007 Feb 18.

PMID:
17308339
39.

A cassette system to study embryonic stem cell differentiation by inducible RNA interference.

Wegmüller D, Raineri I, Gross B, Oakeley EJ, Moroni C.

Stem Cells. 2007 May;25(5):1178-85. Epub 2007 Jan 11.

40.

Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells.

Schmitter D, Filkowski J, Sewer A, Pillai RS, Oakeley EJ, Zavolan M, Svoboda P, Filipowicz W.

Nucleic Acids Res. 2006;34(17):4801-15. Epub 2006 Sep 13.

41.

CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis.

Oravecz A, Baumann A, Máté Z, Brzezinska A, Molinier J, Oakeley EJ, Adám E, Schäfer E, Nagy F, Ulm R.

Plant Cell. 2006 Aug;18(8):1975-90. Epub 2006 Jul 7.

42.

Abundant transcripts from retrotransposons are unstable in fully grown mouse oocytes.

Puschendorf M, Stein P, Oakeley EJ, Schultz RM, Peters AH, Svoboda P.

Biochem Biophys Res Commun. 2006 Aug 18;347(1):36-43. Epub 2006 Jun 27.

PMID:
16815300
43.

Sex-specific role of Drosophila melanogaster HP1 in regulating chromatin structure and gene transcription.

Liu LP, Ni JQ, Shi YD, Oakeley EJ, Sun FL.

Nat Genet. 2005 Dec;37(12):1361-6. Epub 2005 Oct 30.

PMID:
16258543
44.

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells.

Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schübeler D.

Nat Genet. 2005 Aug;37(8):853-62. Epub 2005 Jul 10.

PMID:
16007088
45.

PromoterPlot: a graphical display of promoter similarities by pattern recognition.

Di Cara A, Schmidt K, Hemmings BA, Oakeley EJ.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W423-6.

46.

Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization.

Güimil S, Chang HS, Zhu T, Sesma A, Osbourn A, Roux C, Ioannidis V, Oakeley EJ, Docquier M, Descombes P, Briggs SP, Paszkowski U.

Proc Natl Acad Sci U S A. 2005 May 31;102(22):8066-70. Epub 2005 May 19.

47.

Dynamic response of plant genome to ultraviolet radiation and other genotoxic stresses.

Molinier J, Oakeley EJ, Niederhauser O, Kovalchuk I, Hohn B.

Mutat Res. 2005 Apr 1;571(1-2):235-47. Epub 2005 Jan 26.

PMID:
15748650
48.

Suppression of RNA silencing by a geminivirus nuclear protein, AC2, correlates with transactivation of host genes.

Trinks D, Rajeswaran R, Shivaprasad PV, Akbergenov R, Oakeley EJ, Veluthambi K, Hohn T, Pooggin MM.

J Virol. 2005 Feb;79(4):2517-27.

49.

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.

White EJ, Emanuelsson O, Scalzo D, Royce T, Kosak S, Oakeley EJ, Weissman S, Gerstein M, Groudine M, Snyder M, Schübeler D.

Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17771-6. Epub 2004 Dec 10.

50.

Growth promoting signaling by tenascin-C [corrected].

Ruiz C, Huang W, Hegi ME, Lange K, Hamou MF, Fluri E, Oakeley EJ, Chiquet-Ehrismann R, Orend G.

Cancer Res. 2004 Oct 15;64(20):7377-85. Erratum in: Cancer Res. 2004 Nov 15;64(22):8484.

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