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A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience.

Shardlow M, Ju M, Li M, O'Reilly C, Iavarone E, McNaught J, Ananiadou S.

Neuroinformatics. 2018 Nov 15. doi: 10.1007/s12021-018-9404-y. [Epub ahead of print]


Ten simple rules for collaboratively writing a multi-authored paper.

Frassl MA, Hamilton DP, Denfeld BA, de Eyto E, Hampton SE, Keller PS, Sharma S, Lewis ASL, Weyhenmeyer GA, O'Reilly CM, Lofton ME, Catalán N.

PLoS Comput Biol. 2018 Nov 15;14(11):e1006508. doi: 10.1371/journal.pcbi.1006508. eCollection 2018 Nov. No abstract available.


Diarrhoea, enteric pathogen detection and nutritional indicators among controls in the Global Enteric Multicenter Study, Kenya site: an opportunity to understand reference populations in case-control studies of diarrhoea.

Berendes DM, O'Reilly CE, Kim S, Omore R, Ochieng JB, Ayers T, Fagerli K, Farag TH, Nasrin D, Panchalingam S, Nataro JP, Kotloff KL, Levine MM, Oundo J, Laserson K, Breiman RF, Mintz ED.

Epidemiol Infect. 2018 Nov 15:1-9. doi: 10.1017/S0950268818002972. [Epub ahead of print]


To contemplate or not to contemplate evaluating a preliminary intervention proposal in an outpatient setting: the contemplation therapy group.

Sanford-Opatz L, Woodward D, O'Reilly C, Brooks E, Limbert C.

Eat Weight Disord. 2018 Nov 9. doi: 10.1007/s40519-018-0610-2. [Epub ahead of print]


Confidence and attitudes of pharmacy students towards suicidal crises: patient simulation using people with a lived experience.

Boukouvalas EA, El-Den S, Chen TF, Moles R, Saini B, Bell A, O'Reilly CL.

Soc Psychiatry Psychiatr Epidemiol. 2018 Nov;53(11):1185-1195. doi: 10.1007/s00127-018-1582-2. Epub 2018 Aug 28.


Water, Sanitation, and Hygiene Characteristics among HIV-Positive Households Participating in the Global Enteric Multicenter Study in Rural Western Kenya, 2008-2012.

Schilling KA, Awuor AO, Rajasingham A, Moke F, Omore R, Amollo M, Farag TH, Nasrin D, Nataro JP, Kotloff KL, Levine MM, Ayers T, Laserson K, Blackstock A, Rothenberg R, Stauber CE, Mintz ED, Breiman RF, O'Reilly CE.

Am J Trop Med Hyg. 2018 Oct;99(4):905-915. doi: 10.4269/ajtmh.17-0774.


Influence of mode of delivery on outcomes in preterm breech infants presenting in labor.

O'Reilly C, Hehir MP, Mahony R.

J Matern Fetal Neonatal Med. 2018 Sep 6:1-5. doi: 10.1080/14767058.2018.1500542. [Epub ahead of print]


Clinical, environmental, and behavioral characteristics associated with Cryptosporidium infection among children with moderate-to-severe diarrhea in rural western Kenya, 2008-2012: The Global Enteric Multicenter Study (GEMS).

Delahoy MJ, Omore R, Ayers TL, Schilling KA, Blackstock AJ, Ochieng JB, Moke F, Jaron P, Awuor A, Okonji C, Juma J, Farag TH, Nasrin D, Panchalingam S, Nataro JP, Kotloff KL, Levine MM, Oundo J, Roellig DM, Xiao L, Parsons MB, Laserson K, Mintz ED, Breiman RF, O'Reilly CE.

PLoS Negl Trop Dis. 2018 Jul 12;12(7):e0006640. doi: 10.1371/journal.pntd.0006640. eCollection 2018 Jul.


Community pharmacists' attitudes and opinions towards supplying clozapine.

Gan YL, O'Reilly CL.

Int J Clin Pharm. 2018 Jun 23. doi: 10.1007/s11096-018-0676-y. [Epub ahead of print]


Community pharmacists' experiences and people at risk of suicide in Canada and Australia: a thematic analysis.

Murphy AL, Ataya R, Himmelman D, O'Reilly C, Rosen A, Salvador-Carulla L, Martin-Misener R, Burge F, Kutcher S, Gardner DM.

Soc Psychiatry Psychiatr Epidemiol. 2018 Jun 23. doi: 10.1007/s00127-018-1553-7. [Epub ahead of print]


Systems, supplies, and staff: a mixed-methods study of health care workers' experiences and health facility preparedness during a large national cholera outbreak, Kenya 2015.

Curran KG, Wells E, Crowe SJ, Narra R, Oremo J, Boru W, Githuku J, Obonyo M, De Cock KM, Montgomery JM, Makayotto L, Langat D, Lowther SA, O'Reilly C, Gura Z, Kioko J.

BMC Public Health. 2018 Jun 11;18(1):723. doi: 10.1186/s12889-018-5584-5.


Novel thioglycoside analogs of α-galactosylceramide stimulate cytotoxicity and preferential Th1 cytokine production by human invariant natural killer T cells.

Melo AM, Zhang L, Dockry ÉF, Petrasca A, Ghnewa YG, Breen EP, Morrissey ME, O'Reilly C, Bruen R, O'Meara A, Lysaght J, Zhu X, Doherty DG.

Glycobiology. 2018 Jul 1;28(7):512-521. doi: 10.1093/glycob/cwy035.


Qualitative evaluation of how a virtual dementia experience impacts medical and pharmacy students' self-reported knowledge and attitudes towards people with dementia.

Gilmartin-Thomas JF, McNeil J, Powell A, Malone DT, Larson IC, O'Reilly CL, Kirkpatrick CM, Kipen E, Petrovich T, Ryan-Atwood TE, Bell JS.

Dementia (London). 2018 Jan 1:1471301218770270. doi: 10.1177/1471301218770270. [Epub ahead of print]


A Randomized Controlled Trial to Assess the Impact of Ceramic Water Filters on Prevention of Diarrhea and Cryptosporidiosis in Infants and Young Children-Western Kenya, 2013.

Morris JF, Murphy J, Fagerli K, Schneeberger C, Jaron P, Moke F, Juma J, Ochieng JB, Omore R, Roellig D, Xiao L, Priest JW, Narayanan J, Montgomery JM, Hill V, Mintz E, Ayers TL, O'Reilly CE.

Am J Trop Med Hyg. 2018 May;98(5):1260-1268. doi: 10.4269/ajtmh.17-0731. Epub 2018 Mar 29.


Assessing Mental Health First Aid Skills Using Simulated Patients.

El-Den S, Chen TF, Moles RJ, O'Reilly C.

Am J Pharm Educ. 2018 Mar;82(2):6222. doi: 10.5688/ajpe6222.


Measuring vocal difference in bird population pairs.

O'Reilly C, Analuddin K, Kelly DJ, Harte N.

J Acoust Soc Am. 2018 Mar;143(3):1658. doi: 10.1121/1.5027244.


The enemy of my enemy is my friend: native pine marten recovery reverses the decline of the red squirrel by suppressing grey squirrel populations.

Sheehy E, Sutherland C, O'Reilly C, Lambin X.

Proc Biol Sci. 2018 Mar 14;285(1874). pii: 20172603. doi: 10.1098/rspb.2017.2603.


Impact of a Virtual Dementia Experience on Medical and Pharmacy Students' Knowledge and Attitudes Toward People with Dementia: A Controlled Study.

Gilmartin-Thomas JF, McNeil J, Powell A, Malone DT, Wolfe R, Larson IC, O'Reilly CL, Kirkpatrick CM, Kipen E, Petrovich T, Bell JS.

J Alzheimers Dis. 2018;62(2):867-876. doi: 10.3233/JAD-170982.


The Prevalence of Dyslipidemia and Other Cardiovascular Risk Factors in Youth with Diabetes.

Hamilton L, Wilson DP, O'Reilly CM, Gonzalez J, de la Torre A.

Curr Pediatr Rev. 2017;13(4):277-280. doi: 10.2174/1573396314666180221163924.


Community pharmacists' attitudes on suicide: A preliminary analysis with implications for medical assistance in dying.

Murphy AL, O'Reilly C, Martin-Misener R, Ataya R, Gardner D.

Can Pharm J (Ott). 2017 Dec 1;151(1):17-23. doi: 10.1177/1715163517744225. eCollection 2018 Jan-Feb. No abstract available.


A prospective pilot study of Dilapan-S compared with Propess for induction of labour at 41+ weeks in nulliparous pregnancy.

Crosby DA, O'Reilly C, McHale H, McAuliffe FM, Mahony R.

Ir J Med Sci. 2018 Aug;187(3):693-699. doi: 10.1007/s11845-017-1731-8. Epub 2017 Dec 21.


Correction: Sanitation practices and perceptions in Kakuma refugee camp, Kenya: Comparing the status quo with a novel service-based approach.

Nyoka R, Foote AM, Woods E, Lokey H, O'Reilly CE, Magumba F, Okello P, Mintz ED, Marano N, Morris JF.

PLoS One. 2017 Dec 19;12(12):e0190129. doi: 10.1371/journal.pone.0190129. eCollection 2017.


Toll-like receptor 3 L412F polymorphism promotes a persistent clinical phenotype in pulmonary sarcoidosis.

Cooke G, Kamal I, Strengert M, Hams E, Mawhinney L, Tynan A, O'Reilly C, O'Dwyer DN, Kunkel SL, Knaus UG, Shields DC, Moller DR, Bowie AG, Fallon PG, Hogaboam CM, Armstrong ME, Donnelly SC.

QJM. 2018 Apr 1;111(4):217-224. doi: 10.1093/qjmed/hcx243.


The role of community pharmacists in the identification and ongoing management of women at risk for perinatal depression: A qualitative study.

Elkhodr S, Saba M, O'Reilly C, Saini B.

Int J Soc Psychiatry. 2018 Feb;64(1):37-48. doi: 10.1177/0020764017746198. Epub 2017 Dec 8.


A scoping review of community pharmacists and patients at risk of suicide.

Murphy AL, Hillier K, Ataya R, Thabet P, Whelan AM, O'Reilly C, Gardner D.

Can Pharm J (Ott). 2017 Oct 5;150(6):366-379. doi: 10.1177/1715163517733482. eCollection 2017 Nov-Dec. Review.


The effect of costs on Kenyan households' demand for medical care: why time and distance matter.

Kukla M, McKay N, Rheingans R, Harman J, Schumacher J, Kotloff KL, Levine MM, Breiman R, Farag T, Walker D, Nasrin D, Omore R, O'Reilly C, Mintz E.

Health Policy Plan. 2017 Dec 1;32(10):1397-1406. doi: 10.1093/heapol/czx120.


Sleep: An Open-Source Python Software for Visualization, Analysis, and Staging of Sleep Data.

Combrisson E, Vallat R, Eichenlaub JB, O'Reilly C, Lajnef T, Guillot A, Ruby PM, Jerbi K.

Front Neuroinform. 2017 Sep 21;11:60. doi: 10.3389/fninf.2017.00060. eCollection 2017.


The psychometric properties of depression screening tools in primary healthcare settings: A systematic review.

El-Den S, Chen TF, Gan YL, Wong E, O'Reilly CL.

J Affect Disord. 2018 Jan 1;225:503-522. doi: 10.1016/j.jad.2017.08.060. Epub 2017 Aug 23. Review.


Purification of functional reprogramming factors in mammalian cell using FLAG -Tag.

Han MJ, Kim HR, O'Reilly C, Kim CH.

Biochem Biophys Res Commun. 2017 Oct 14;492(2):154-160. doi: 10.1016/j.bbrc.2017.08.028. Epub 2017 Aug 9.


Animal-related factors associated with moderate-to-severe diarrhea in children younger than five years in western Kenya: A matched case-control study.

Conan A, O'Reilly CE, Ogola E, Ochieng JB, Blackstock AJ, Omore R, Ochieng L, Moke F, Parsons MB, Xiao L, Roellig D, Farag TH, Nataro JP, Kotloff KL, Levine MM, Mintz ED, Breiman RF, Cleaveland S, Knobel DL.

PLoS Negl Trop Dis. 2017 Aug 4;11(8):e0005795. doi: 10.1371/journal.pntd.0005795. eCollection 2017 Aug.


Macrophage migration inhibitory factor enhances Pseudomonas aeruginosa biofilm formation, potentially contributing to cystic fibrosis pathogenesis.

Tynan A, Mawhinney L, Armstrong ME, O'Reilly C, Kennedy S, Caraher E, Jülicher K, O'Dwyer D, Maher L, Schaffer K, Fabre A, McKone EF, Leng L, Bucala R, Bernhagen J, Cooke G, Donnelly SC.

FASEB J. 2017 Nov;31(11):5102-5110. doi: 10.1096/fj.201700463R. Epub 2017 Aug 2.


Factors Associated with the Duration of Moderate-to-Severe Diarrhea among Children in Rural Western Kenya Enrolled in the Global Enteric Multicenter Study, 2008-2012.

Schilling KA, Omore R, Derado G, Ayers T, Ochieng JB, Farag TH, Nasrin D, Panchalingam S, Nataro JP, Kotloff KL, Levine MM, Oundo J, Parsons MB, Bopp C, Laserson K, Stauber CE, Rothenberg R, Breiman RF, O'Reilly CE, Mintz ED.

Am J Trop Med Hyg. 2017 Jul;97(1):248-258. doi: 10.4269/ajtmh.16-0898.


Sanitation practices and perceptions in Kakuma refugee camp, Kenya: Comparing the status quo with a novel service-based approach.

Nyoka R, Foote AM, Woods E, Lokey H, O'Reilly CE, Magumba F, Okello P, Mintz ED, Marano N, Morris JF.

PLoS One. 2017 Jul 13;12(7):e0180864. doi: 10.1371/journal.pone.0180864. eCollection 2017. Erratum in: PLoS One. 2017 Dec 19;12 (12 ):e0190129.


Developmental Origins of Health and Disease: Who knows? Who cares?

McMullan RL, Fuller NR, Caterson ID, Celermajer DS, Gordon A, Hespe C, Hyett JA, O'Reilly CL, Phipps H, Skilton MR.

J Paediatr Child Health. 2017 Jun;53(6):613-614. doi: 10.1111/jpc.13557. No abstract available.


A Framework for Collaborative Curation of Neuroscientific Literature.

O'Reilly C, Iavarone E, Hill SL.

Front Neuroinform. 2017 Apr 19;11:27. doi: 10.3389/fninf.2017.00027. eCollection 2017.


Is functional brain connectivity atypical in autism? A systematic review of EEG and MEG studies.

O'Reilly C, Lewis JD, Elsabbagh M.

PLoS One. 2017 May 3;12(5):e0175870. doi: 10.1371/journal.pone.0175870. eCollection 2017. Review.


Sleep-dependent consolidation of face recognition and its relationship to REM sleep duration, REM density and Stage 2 sleep spindles.

Solomonova E, Stenstrom P, Schon E, Duquette A, Dubé S, O'Reilly C, Nielsen T.

J Sleep Res. 2017 Jun;26(3):318-321. doi: 10.1111/jsr.12520. Epub 2017 Mar 31.


Meet Spinky: An Open-Source Spindle and K-Complex Detection Toolbox Validated on the Open-Access Montreal Archive of Sleep Studies (MASS).

Lajnef T, O'Reilly C, Combrisson E, Chaibi S, Eichenlaub JB, Ruby PM, Aguera PE, Samet M, Kachouri A, Frenette S, Carrier J, Jerbi K.

Front Neuroinform. 2017 Mar 2;11:15. doi: 10.3389/fninf.2017.00015. eCollection 2017.


Corrigendum to "an initial evaluation of a comprehensive continuing care intervention for clients with substance use disorders: My first year of recovery (MyFYR)" [journal of substance abuse treatment 67 (2016) 50-54].

McKay JR, Knepper C, Deneke E, O'Reilly C, DuPont RL.

J Subst Abuse Treat. 2017 Apr;75:97. doi: 10.1016/j.jsat.2017.01.010. Epub 2017 Feb 8. No abstract available.


Editorial: Sleep Spindles: Breaking the Methodological Wall.

O'Reilly C, Warby SC, Nielsen T.

Front Hum Neurosci. 2017 Jan 18;10:672. doi: 10.3389/fnhum.2016.00672. eCollection 2016. No abstract available.


Why fat suits do not advance the scientific study of weight stigma.

Meadows A, Daníelsdóttir S, Calogero R, O'Reilly C.

Obesity (Silver Spring). 2017 Feb;25(2):275. doi: 10.1002/oby.21742. Epub 2017 Jan 11. No abstract available.


A robust automatic birdsong phrase classification: A template-based approach.

Kaewtip K, Alwan A, O'Reilly C, Taylor CE.

J Acoust Soc Am. 2016 Nov;140(5):3691.


Ecology under lake ice.

Hampton SE, Galloway AW, Powers SM, Ozersky T, Woo KH, Batt RD, Labou SG, O'Reilly CM, Sharma S, Lottig NR, Stanley EH, North RL, Stockwell JD, Adrian R, Weyhenmeyer GA, Arvola L, Baulch HM, Bertani I, Bowman LL Jr, Carey CC, Catalan J, Colom-Montero W, Domine LM, Felip M, Granados I, Gries C, Grossart HP, Haberman J, Haldna M, Hayden B, Higgins SN, Jolley JC, Kahilainen KK, Kaup E, Kehoe MJ, MacIntyre S, Mackay AW, Mariash HL, McKay RM, Nixdorf B, Nõges P, Nõges T, Palmer M, Pierson DC, Post DM, Pruett MJ, Rautio M, Read JS, Roberts SL, Rücker J, Sadro S, Silow EA, Smith DE, Sterner RW, Swann GE, Timofeyev MA, Toro M, Twiss MR, Vogt RJ, Watson SB, Whiteford EJ, Xenopoulos MA.

Ecol Lett. 2017 Jan;20(1):98-111. doi: 10.1111/ele.12699. Epub 2016 Nov 27. Review.


Real-time PCR detection of aldoxime dehydratase genes in nitrile-degrading microorganisms.

Dooley-Cullinane TM, O'Reilly C, Coffey L.

Antonie Van Leeuwenhoek. 2017 Feb;110(2):271-279. doi: 10.1007/s10482-016-0786-2. Epub 2016 Oct 27.


From personal crisis care to convenience shopping: an interpretive description of the experiences of people with mental illness and addictions in community pharmacies.

Murphy AL, Martin-Misener R, Kutcher SP, O'Reilly CL, Chen TF, Gardner DM.

BMC Health Serv Res. 2016 Oct 12;16(1):569.


Guidelines for the Management of Severe Traumatic Brain Injury, Fourth Edition.

Carney N, Totten AM, O'Reilly C, Ullman JS, Hawryluk GW, Bell MJ, Bratton SL, Chesnut R, Harris OA, Kissoon N, Rubiano AM, Shutter L, Tasker RC, Vavilala MS, Wilberger J, Wright DW, Ghajar J.

Neurosurgery. 2017 Jan 1;80(1):6-15. doi: 10.1227/NEU.0000000000001432.


Epidemiology, Seasonality and Factors Associated with Rotavirus Infection among Children with Moderate-to-Severe Diarrhea in Rural Western Kenya, 2008-2012: The Global Enteric Multicenter Study (GEMS).

Omore R, Tate JE, O'Reilly CE, Ayers T, Williamson J, Moke F, Schilling KA, Awuor AO, Jaron P, Ochieng JB, Oundo J, Parashar UD, Parsons MB, Bopp CC, Nasrin D, Farag TH, Kotloff KL, Nataro JP, Panchalingam S, Levine MM, Laserson KF, Nuorti JP, Mintz ED, Breiman RF.

PLoS One. 2016 Aug 5;11(8):e0160060. doi: 10.1371/journal.pone.0160060. eCollection 2016.


Stigma and discrimination experienced by people living with severe and persistent mental illness in assertive community treatment settings.

Ye J, Chen TF, Paul D, McCahon R, Shankar S, Rosen A, O'Reilly CL.

Int J Soc Psychiatry. 2016 Sep;62(6):532-41. doi: 10.1177/0020764016651459. Epub 2016 Jun 21.


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