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Items: 35

1.

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types.

Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE.

Cell Rep. 2019 May 14;27(7):2241-2247.e4. doi: 10.1016/j.celrep.2019.04.054.

2.

Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication.

Panchy NL, Azodi CB, Winship EF, O'Malley RC, Shiu SH.

BMC Evol Biol. 2019 Mar 13;19(1):77. doi: 10.1186/s12862-019-1398-z.

3.

SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae.

Handakumbura PP, Brow K, Whitney IP, Zhao K, Sanguinet KA, Lee SJ, Olins J, Romero-Gamboa SP, Harrington MJ, Bascom CJ, MacKinnon KJ, Veling MT, Liu L, Lee JE, Vogel JP, O'Malley RC, Bezanilla M, Bartley LE, Hazen SP.

Plant J. 2018 Nov;96(3):532-545. doi: 10.1111/tpj.14047. Epub 2018 Sep 12.

PMID:
30054951
4.

Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa.

Fischer MS, Wu VW, Lee JE, O'Malley RC, Glass NL.

Genetics. 2018 Jun;209(2):489-506. doi: 10.1534/genetics.118.300904. Epub 2018 Apr 20.

5.

Predation by female chimpanzees: Toward an understanding of sex differences in meat acquisition in the last common ancestor of Pan and Homo.

Gilby IC, Machanda ZP, O'Malley RC, Murray CM, Lonsdorf EV, Walker K, Mjungu DC, Otali E, Muller MN, Emery Thompson M, Pusey AE, Wrangham RW.

J Hum Evol. 2017 Sep;110:82-94. doi: 10.1016/j.jhevol.2017.06.015. Epub 2017 Jul 20.

6.

Mapping genome-wide transcription-factor binding sites using DAP-seq.

Bartlett A, O'Malley RC, Huang SC, Galli M, Nery JR, Gallavotti A, Ecker JR.

Nat Protoc. 2017 Aug;12(8):1659-1672. doi: 10.1038/nprot.2017.055. Epub 2017 Jul 20.

7.

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape.

O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR.

Cell. 2016 Sep 8;166(6):1598. doi: 10.1016/j.cell.2016.08.063. Epub 2016 Sep 8. No abstract available.

8.

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.

Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, Becker C, O'Neil R, O'Malley RC, Quarless DX; 1001 Genomes Consortium, Schork NJ, Weigel D, Nordborg M, Ecker JR.

Cell. 2016 Jul 14;166(2):492-505. doi: 10.1016/j.cell.2016.06.044.

9.

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape.

O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR.

Cell. 2016 May 19;165(5):1280-1292. doi: 10.1016/j.cell.2016.04.038. Erratum in: Cell. 2016 Sep 8;166(6):1598.

10.

The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram.

Prigge MJ, Greenham K, Zhang Y, Santner A, Castillejo C, Mutka AM, O'Malley RC, Ecker JR, Kunkel BN, Estelle M.

G3 (Bethesda). 2016 May 3;6(5):1383-90. doi: 10.1534/g3.115.025585.

11.

Reproductive state and rank influence patterns of meat consumption in wild female chimpanzees (Pan troglodytes schweinfurthii).

O'Malley RC, Stanton MA, Gilby IC, Lonsdorf EV, Pusey A, Markham AC, Murray CM.

J Hum Evol. 2016 Jan;90:16-28. doi: 10.1016/j.jhevol.2015.09.009. Epub 2015 Nov 4.

12.

A user's guide to the Arabidopsis T-DNA insertion mutant collections.

O'Malley RC, Barragan CC, Ecker JR.

Methods Mol Biol. 2015;1284:323-42. doi: 10.1007/978-1-4939-2444-8_16.

13.

Why do chimpanzees hunt? Considering the benefits and costs of acquiring and consuming vertebrate versus invertebrate prey.

Tennie C, O'Malley RC, Gilby IC.

J Hum Evol. 2014 Jun;71:38-45. doi: 10.1016/j.jhevol.2014.02.015. Epub 2014 Apr 2. Review.

PMID:
24703750
14.

Primates, insects and insect resources.

O'Malley RC, McGrew WC.

J Hum Evol. 2014 Jun;71:1-3. doi: 10.1016/j.jhevol.2014.02.010. Epub 2014 Apr 3. No abstract available.

PMID:
24703185
15.

The energetic and nutritional yields from insectivory for Kasekela chimpanzees.

O'Malley RC, Power ML.

J Hum Evol. 2014 Jun;71:46-58. doi: 10.1016/j.jhevol.2013.09.014. Epub 2014 Apr 1.

PMID:
24698197
16.

Epiallelic variation in Arabidopsis thaliana.

O'Malley RC, Ecker JR.

Cold Spring Harb Symp Quant Biol. 2012;77:135-45. doi: 10.1101/sqb.2012.77.014571. Epub 2012 Dec 5. Review.

17.

Nutritional composition of actual and potential insect prey for the Kasekela chimpanzees of Gombe National Park, Tanzania.

O'Malley RC, Power ML.

Am J Phys Anthropol. 2012 Dec;149(4):493-503. doi: 10.1002/ajpa.22151. Epub 2012 Oct 31.

PMID:
23115107
18.
19.

Responses of chimpanzees to a recently dead community member at Gombe National Park, Tanzania.

Stewart FA, Piel AK, O'Malley RC.

Am J Primatol. 2012 Jan 1;74(1):1-7. doi: 10.1002/ajp.20994. Epub 2011 Oct 28.

PMID:
22038875
20.

Transgenerational epigenetic instability is a source of novel methylation variants.

Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR.

Science. 2011 Oct 21;334(6054):369-73. doi: 10.1126/science.1212959. Epub 2011 Sep 15.

21.

Linking genotype to phenotype using the Arabidopsis unimutant collection.

O'Malley RC, Ecker JR.

Plant J. 2010 Mar;61(6):928-40. doi: 10.1111/j.1365-313X.2010.04119.x. Review.

22.

A link between RNA metabolism and silencing affecting Arabidopsis development.

Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR.

Dev Cell. 2008 Jun;14(6):854-66. doi: 10.1016/j.devcel.2008.04.005. Epub 2008 May 22.

23.

Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR.

Cell. 2008 May 2;133(3):523-36. doi: 10.1016/j.cell.2008.03.029.

24.

Sleeping tree choice by Bwindi chimpanzees.

Stanford CB, O'Malley RC.

Am J Primatol. 2008 Jul;70(7):642-9. doi: 10.1002/ajp.20539.

PMID:
18381629
25.

An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome.

O'Malley RC, Alonso JM, Kim CJ, Leisse TJ, Ecker JR.

Nat Protoc. 2007;2(11):2910-7.

PMID:
18007627
26.

Ethylene stimulates nutations that are dependent on the ETR1 receptor.

Binder BM, O'Malley RC, Wang W, Zutz TC, Bleecker AB.

Plant Physiol. 2006 Dec;142(4):1690-700. Epub 2006 Oct 27.

27.

Hand preferences in captive orangutans (Pongo pygmaeus).

O'malley RC, McGrew WC.

Primates. 2006 Jul;47(3):279-83. Epub 2006 Apr 8.

PMID:
16604276
28.
29.

Ethylene-binding activity, gene expression levels, and receptor system output for ethylene receptor family members from Arabidopsis and tomato.

O'Malley RC, Rodriguez FI, Esch JJ, Binder BM, O'Donnell P, Klee HJ, Bleecker AB.

Plant J. 2005 Mar;41(5):651-9.

30.

Evaluating social influences on food-processing behavior in white-faced capuchins (Cebus capucinus).

O'Malley RC, Fedigan LM.

Am J Phys Anthropol. 2005 Aug;127(4):481-91.

PMID:
15693024
31.

Arabidopsis seedling growth response and recovery to ethylene. A kinetic analysis.

Binder BM, O'malley RC, Wang W, Moore JM, Parks BM, Spalding EP, Bleecker AB.

Plant Physiol. 2004 Oct;136(2):2913-20. Epub 2004 Oct 1.

32.

Oral tool use by captive orangutans (Pongo pygmaeus).

O'Malley RC, McGrew WC.

Folia Primatol (Basel). 2000 Sep-Oct;71(5):334-41.

PMID:
11093037
33.

Signaling Organogenesis in Parasitic Angiosperms: Xenognosin Generation, Perception, and Response.

Keyes WJ, O'Malley RC, Kim D, Lynn DG.

J Plant Growth Regul. 2000 Jun;19(2):217-231.

PMID:
11038229
34.
35.

A mechanism for inducing plant development: the genesis of a specific inhibitor.

Smith CE, Ruttledge T, Zeng Z, O'Malley RC, Lynn DG.

Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):6986-91.

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