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Items: 40

1.

Module for SWC neuron morphology file validation and correction enabled for high throughput batch processing.

O'Halloran DM.

PLoS One. 2020 Jan 23;15(1):e0228091. doi: 10.1371/journal.pone.0228091. eCollection 2020.

2.

An inducible model of human amylin overexpression reveals diverse transcriptional changes.

Aldras Y, Singh S, Bode K, Bhowmick DC, Jeremic A, O'Halloran DM.

Neurosci Lett. 2019 Jun 21;704:212-219. doi: 10.1016/j.neulet.2019.04.016. Epub 2019 Apr 8.

PMID:
30974231
3.

Isolation and characterization of a naturally occurring multidrug-resistant strain of the canine hookworm, Ancylostoma caninum.

Kitchen S, Ratnappan R, Han S, Leasure C, Grill E, Iqbal Z, Granger O, O'Halloran DM, Hawdon JM.

Int J Parasitol. 2019 Apr;49(5):397-406. doi: 10.1016/j.ijpara.2018.12.004. Epub 2019 Feb 14.

PMID:
30771359
4.

Genome aware CRISPR gRNA target prediction for parasitic nematodes.

O'Halloran DM.

Mol Biochem Parasitol. 2019 Jan;227:25-28. doi: 10.1016/j.molbiopara.2018.12.001. Epub 2018 Dec 7.

PMID:
30529475
5.

General practice work and workforce: Interdependencies between demand, supply and quality.

Sturmberg JP, O'Halloran DM, McDonnell G, Martin CM.

Aust J Gen Pract. 2018 Aug;47(8):507-513. doi: 10.31128/AJGP-03-18-4515.

6.

NCX-DB: a unified resource for integrative analysis of the sodium calcium exchanger super-family.

Bode K, O'Halloran DM.

BMC Neurosci. 2018 Apr 13;19(1):19. doi: 10.1186/s12868-018-0423-2.

7.

Refined ab initio gene predictions of Heterorhabditis bacteriophora using RNA-seq.

Vadnal J, Granger OG, Ratnappan R, Eleftherianos I, O'Halloran DM, Hawdon JM.

Int J Parasitol. 2018 Jul;48(8):585-590. doi: 10.1016/j.ijpara.2018.02.001. Epub 2018 Mar 9.

8.

fastQ_brew: module for analysis, preprocessing, and reformatting of FASTQ sequence data.

O'Halloran DM.

BMC Res Notes. 2017 Jul 12;10(1):275. doi: 10.1186/s13104-017-2616-7.

9.

phylo-node: A molecular phylogenetic toolkit using Node.js.

O'Halloran DM.

PLoS One. 2017 Apr 14;12(4):e0175480. doi: 10.1371/journal.pone.0175480. eCollection 2017.

10.

STITCHER 2.0: primer design for overlapping PCR applications.

O'Halloran DM, Uriagereka-Herburger I, Bode K.

Sci Rep. 2017 Mar 30;7:45349. doi: 10.1038/srep45349.

11.

Contribution of the cyclic nucleotide gated channel subunit, CNG-3, to olfactory plasticity in Caenorhabditis elegans.

O'Halloran DM, Altshuler-Keylin S, Zhang XD, He C, Morales-Phan C, Yu Y, Kaye JA, Brueggemann C, Chen TY, L'Etoile ND.

Sci Rep. 2017 Mar 13;7(1):169. doi: 10.1038/s41598-017-00126-7.

12.

The NCLX-type Na+/Ca2+ Exchanger NCX-9 Is Required for Patterning of Neural Circuits in Caenorhabditis elegans.

Sharma V, Roy S, Sekler I, O'Halloran DM.

J Biol Chem. 2017 Mar 31;292(13):5364-5377. doi: 10.1074/jbc.M116.758953. Epub 2017 Feb 14.

13.

A Guide to Using STITCHER for Overlapping Assembly PCR Applications.

O'Halloran DM.

Methods Mol Biol. 2017;1472:3-11. doi: 10.1007/978-1-4939-6343-0_1.

PMID:
27671928
14.

NemaCount: quantification of nematode chemotaxis behavior in a browser.

O'Halloran DM.

Invert Neurosci. 2016 Jun;16(2):5. doi: 10.1007/s10158-016-0188-1. Epub 2016 May 21.

PMID:
27209025
15.
16.

Nematode Sodium Calcium Exchangers: A Surprising Lack of Transport.

Sharma V, O'Halloran DM.

Bioinform Biol Insights. 2016 Feb 1;10:1-4. doi: 10.4137/BBI.S37130. eCollection 2016.

17.

PrimerView: high-throughput primer design and visualization.

O'Halloran DM.

Source Code Biol Med. 2015 Jun 4;10:8. doi: 10.1186/s13029-015-0038-2. eCollection 2015.

18.

Analysis of the Na+/Ca2+ exchanger gene family within the phylum Nematoda.

He C, O'Halloran DM.

PLoS One. 2014 Nov 14;9(11):e112841. doi: 10.1371/journal.pone.0112841. eCollection 2014.

19.

Exploring Client and Therapist Experiences of Sexual Offender Intervention: Developing a Model of "Significant Events".

O'Halloran DM, O' Reilly G, Travers O, Quinn P, Stack J, Cartin M, Finnegan E, Ewart-Boyle S.

Sex Abuse. 2016 Jun;28(4):314-39. doi: 10.1177/1079063214535815. Epub 2014 May 26.

PMID:
24867417
20.

Recent structural and functional insights into the family of sodium calcium exchangers.

Sharma V, O'Halloran DM.

Genesis. 2014 Feb;52(2):93-109. doi: 10.1002/dvg.22735. Epub 2013 Dec 27. Review.

PMID:
24376088
21.

STITCHER: A web resource for high-throughput design of primers for overlapping PCR applications.

O'Halloran DM.

Biotechniques. 2015 Jun 1;58(6):325-8. doi: 10.2144/000114301. eCollection 2015 Jun.

22.
23.

Nuclear PKG localization is regulated by G₀ alpha and is necessary in the AWB neurons to mediate avoidance in Caenorhabditis elegans.

He C, O'Halloran DM.

Neurosci Lett. 2013 Oct 11;553:35-9. doi: 10.1016/j.neulet.2013.08.011. Epub 2013 Aug 14.

PMID:
23954825
24.

Insight into the family of Na+/Ca2+ exchangers of Caenorhabditis elegans.

Sharma V, He C, Sacca-Schaeffer J, Brzozowski E, Martin-Herranz DE, Mendelowitz Z, Fitzpatrick DA, O'Halloran DM.

Genetics. 2013 Oct;195(2):611-9. doi: 10.1534/genetics.113.153106. Epub 2013 Jul 26.

25.

Cell- and subunit-specific mechanisms of CNG channel ciliary trafficking and localization in C. elegans.

Wojtyniak M, Brear AG, O'Halloran DM, Sengupta P.

J Cell Sci. 2013 Oct 1;126(Pt 19):4381-95. doi: 10.1242/jcs.127274. Epub 2013 Jul 25.

26.

Investigating the Relationship between Topology and Evolution in a Dynamic Nematode Odor Genetic Network.

Fitzpatrick DA, O'Halloran DM.

Int J Evol Biol. 2012;2012:548081. doi: 10.1155/2012/548081. Epub 2012 Sep 28.

27.

Changes in cGMP levels affect the localization of EGL-4 in AWC in Caenorhabditis elegans.

O'Halloran DM, Hamilton OS, Lee JI, Gallegos M, L'Etoile ND.

PLoS One. 2012;7(2):e31614. doi: 10.1371/journal.pone.0031614. Epub 2012 Feb 3.

28.

Understanding health system reform - a complex adaptive systems perspective.

Sturmberg JP, O'Halloran DM, Martin CM.

J Eval Clin Pract. 2012 Feb;18(1):202-8. doi: 10.1111/j.1365-2753.2011.01792.x.

PMID:
22221420
29.

People at the centre of complex adaptive health systems reform.

Sturmberg JP, O'Halloran DM, Martin CM.

Med J Aust. 2010 Oct 18;193(8):474-8.

PMID:
20955127
30.

Nuclear entry of a cGMP-dependent kinase converts transient into long-lasting olfactory adaptation.

Lee JI, O'Halloran DM, Eastham-Anderson J, Juang BT, Kaye JA, Scott Hamilton O, Lesch B, Goga A, L'Etoile ND.

Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6016-21. doi: 10.1073/pnas.1000866107. Epub 2010 Mar 10.

31.

Regulators of AWC-mediated olfactory plasticity in Caenorhabditis elegans.

O'Halloran DM, Altshuler-Keylin S, Lee JI, L'Etoile ND.

PLoS Genet. 2009 Dec;5(12):e1000761. doi: 10.1371/journal.pgen.1000761. Epub 2009 Dec 11.

32.

Tissue-engineering approach to regenerating the intervertebral disc.

O'Halloran DM, Pandit AS.

Tissue Eng. 2007 Aug;13(8):1927-54. Review.

PMID:
17518718
33.

The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high levels of beta-carotene accumulation.

Lu S, Van Eck J, Zhou X, Lopez AB, O'Halloran DM, Cosman KM, Conlin BJ, Paolillo DJ, Garvin DF, Vrebalov J, Kochian LV, Küpper H, Earle ED, Cao J, Li L.

Plant Cell. 2006 Dec;18(12):3594-605. Epub 2006 Dec 15.

34.

The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes.

O'Halloran DM, Fitzpatrick DA, McCormack GP, McInerney JO, Burnell AM.

J Mol Evol. 2006 Jul;63(1):87-94. Epub 2006 Jun 16.

PMID:
16786439
35.

Multiple lineage specific expansions within the guanylyl cyclase gene family.

Fitzpatrick DA, O'Halloran DM, Burnell AM.

BMC Evol Biol. 2006 Mar 20;6:26.

36.
37.

Enzymatic stabilization of gelatin-based scaffolds.

Broderick EP, O'Halloran DM, Rochev YA, Griffin M, Collighan RJ, Pandit AS.

J Biomed Mater Res B Appl Biomater. 2005 Jan 15;72(1):37-42.

PMID:
15490480
38.

An investigation of chemotaxis in the insect parasitic nematode Heterorhabditis bacteriophora.

O'Halloran DM, Burnell AM.

Parasitology. 2003 Oct;127(Pt 4):375-85.

PMID:
14636024
39.

High-resolution genetic and physical mapping of the cauliflower high-beta-carotene gene Or ( Orange).

Li L, Lu S, O'Halloran DM, Garvin DF, Vrebalov J.

Mol Genet Genomics. 2003 Nov;270(2):132-8. Epub 2003 Aug 8.

PMID:
12908106
40.

Effect of chelating agents and phosphoramidon on the L-leucine transport system in microvillar vesicles from pig kidney.

Kenny AJ, O'Halloran DM.

FEBS Lett. 1979 May 15;101(2):407-10. No abstract available.

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