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Items: 1 to 50 of 502

1.

Return to the sea, get huge, beat cancer: an analysis of cetacean genomes including an assembly for the humpback whale (Megaptera novaeangliae).

Tollis M, Robbins J, Webb AE, Kuderna LFK, Caulin AF, Garcia JD, Bèrubè M, Pourmand N, Marques-Bonet T, O'Connell MJ, Palsbøll PJ, Maley CC.

Mol Biol Evol. 2019 May 9. pii: msz099. doi: 10.1093/molbev/msz099. [Epub ahead of print]

PMID:
31070747
2.

Paternally expressed imprinted genes under positive Darwinian selection in Arabidopsis thaliana.

Tuteja R, McKeown PC, Ryan P, Morgan CC, Donoghue MTA, Downing T, O'Connell MJ, Spillane C.

Mol Biol Evol. 2019 Mar 26. pii: msz063. doi: 10.1093/molbev/msz063. [Epub ahead of print]

3.

Inadvertent paralog inclusion drives artefactual topologies and timetree estimates in phylogenomics.

Siu-Ting K, Torres-Sánchez M, San Mauro D, Wilcockson D, Wilkinson M, Pisani D, O'Connell MJ, Creevey CJ.

Mol Biol Evol. 2019 Mar 23. pii: msz067. doi: 10.1093/molbev/msz067. [Epub ahead of print]

4.

XPG-related nucleases are hierarchically recruited for double-stranded rDNA break resection.

Barnum KJ, Nguyen YT, O'Connell MJ.

J Biol Chem. 2019 May 10;294(19):7632-7643. doi: 10.1074/jbc.RA118.005415. Epub 2019 Mar 18.

PMID:
30885940
5.

A Pilot Study of Motive Control to Reduce Vengeance Cravings.

Rowe M, Kimmel J Jr, Pavlo AJ, Antunes KD, Bellamy CD, O'Connell MJ, Ocasio L, Desai M, Bal J, Flanagan EH.

J Am Acad Psychiatry Law. 2018 Dec;46(4):486-497. doi: 10.29158/JAAPL.003792-18. Epub 2018 Dec 18.

PMID:
30563910
6.

Linked matrix factorization.

O'Connell MJ, Lock EF.

Biometrics. 2018 Dec 5. doi: 10.1111/biom.13010. [Epub ahead of print]

PMID:
30516272
7.

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3.

Cockburn JJB, Hesketh SJ, Mulhair P, Thomsen M, O'Connell MJ, Way M.

Structure. 2018 Nov 6;26(11):1486-1498.e6. doi: 10.1016/j.str.2018.07.011. Epub 2018 Sep 6.

8.

State Agency Support of Weight-Related School Policy Implementation.

Grannon KY, Larson N, Pelletier J, O'Connell MJ, Nanney MS.

J Sch Health. 2018 Sep;88(9):685-692. doi: 10.1111/josh.12673.

PMID:
30133777
9.

Very poor long-term survival in past and more recent studies for relapsed AML patients: The ECOG-ACRIN experience.

Ganzel C, Sun Z, Cripe LD, Fernandez HF, Douer D, Rowe JM, Paietta EM, Ketterling R, O'Connell MJ, Wiernik PH, Bennett JM, Litzow MR, Luger SM, Lazarus HM, Tallman MS.

Am J Hematol. 2018 Jun 15. doi: 10.1002/ajh.25162. [Epub ahead of print]

PMID:
29905379
10.

Outcomes of a Peer Mentor Intervention for Persons With Recurrent Psychiatric Hospitalization.

O'Connell MJ, Sledge WH, Staeheli M, Sells D, Costa M, Wieland M, Davidson L.

Psychiatr Serv. 2018 Jul 1;69(7):760-767. doi: 10.1176/appi.ps.201600478. Epub 2018 Apr 16.

PMID:
29656708
11.

Growing old, yet staying young: The role of telomeres in bats' exceptional longevity.

Foley NM, Hughes GM, Huang Z, Clarke M, Jebb D, Whelan CV, Petit EJ, Touzalin F, Farcy O, Jones G, Ransome RD, Kacprzyk J, O'Connell MJ, Kerth G, Rebelo H, Rodrigues L, Puechmaille SJ, Teeling EC.

Sci Adv. 2018 Feb 7;4(2):eaao0926. doi: 10.1126/sciadv.aao0926. eCollection 2018 Feb.

12.

Reply to 'The population genetics of pangenomes'.

McInerney JO, McNally A, O'Connell MJ.

Nat Microbiol. 2017 Dec;2(12):1575. doi: 10.1038/s41564-017-0068-4. No abstract available.

PMID:
29176701
13.

Response to letter re: Carotid atherosclerotic plaques standardized uptake values: methodological issues on reproducibility and accuracy.

Giannotti N, O'Connell MJ, Foley SJ, Galligan MC, Kelly PJ, McNulty JP.

EJNMMI Res. 2017 Sep 7;7(1):73. doi: 10.1186/s13550-017-0309-9. No abstract available.

14.

Erratum to: Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins.

Morgan CC, Loughran NB, Walsh TA, Harrison AJ, O'Connell MJ.

BMC Evol Biol. 2017 Jul 21;17(1):170. doi: 10.1186/s12862-017-1015-y. No abstract available.

15.

Histone H3G34R mutation causes replication stress, homologous recombination defects and genomic instability in S. pombe.

Yadav RK, Jablonowski CM, Fernandez AG, Lowe BR, Henry RA, Finkelstein D, Barnum KJ, Pidoux AL, Kuo YM, Huang J, O'Connell MJ, Andrews AJ, Onar-Thomas A, Allshire RC, Partridge JF.

Elife. 2017 Jul 18;6. pii: e27406. doi: 10.7554/eLife.27406.

16.

Erratum to: Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response.

Lynch M, Walsh TA, Marszalowska I, Webb AE, Mac Aogáin M, Rogers TR, Windle H, Kelleher D, O'Connell MJ, Loscher CE.

BMC Evol Biol. 2017 Jun 12;17(1):135. doi: 10.1186/s12862-017-0990-3. No abstract available.

17.

Carotid atherosclerotic plaques standardised uptake values: software challenges and reproducibility.

Giannotti N, O'Connell MJ, Foley SJ, Kelly PJ, McNulty JP.

EJNMMI Res. 2017 Dec;7(1):39. doi: 10.1186/s13550-017-0285-0. Epub 2017 Apr 28.

18.

DNA Topoisomerase II modulates acetyl-regulation of cohesin-mediated chromosome dynamics.

Lin SJ, O'Connell MJ.

Curr Genet. 2017 Oct;63(5):923-930. doi: 10.1007/s00294-017-0691-x. Epub 2017 Apr 5.

19.

Why prokaryotes have pangenomes.

McInerney JO, McNally A, O'Connell MJ.

Nat Microbiol. 2017 Mar 28;2:17040. doi: 10.1038/nmicrobiol.2017.40. No abstract available.

20.

Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response.

Lynch M, Walsh TA, Marszalowska I, Webb AE, Mac Aogain M, Rogers TR, Windle H, Kelleher D, O'Connell MJ, Loscher CE.

BMC Evol Biol. 2017 Mar 23;17(1):90. doi: 10.1186/s12862-017-0937-8. Erratum in: BMC Evol Biol. 2017 Jun 12;17 (1):135.

21.

Enhancing outcomes for persons with co-occurring disorders through skills training and peer recovery support.

O'Connell MJ, Flanagan EH, Delphin-Rittmon ME, Davidson L.

J Ment Health. 2017 Mar 10:1-6. doi: 10.1080/09638237.2017.1294733. [Epub ahead of print]

PMID:
28282996
22.

Microbiology: Mind the gaps in cellular evolution.

McInerney JO, O'Connell MJ.

Nature. 2017 Jan 19;541(7637):297-299. doi: 10.1038/nature21113. Epub 2017 Jan 11. No abstract available.

23.

An acetyltransferase-independent function of Eso1 regulates centromere cohesion.

Lin SJ, Tapia-Alveal C, Jabado OJ, Germain D, O'Connell MJ.

Mol Biol Cell. 2016 Dec 15;27(25):4002-4010. Epub 2016 Oct 19.

24.

Impact of sensory design interventions on image quality, patient anxiety and overall patient experience at MRI.

Stanley E, Cradock A, Bisset J, McEntee C, O'Connell MJ.

Br J Radiol. 2016 Nov;89(1067):20160389. Epub 2016 Sep 29.

25.

Impact of Supported Housing on Social Relationships Among Homeless Veterans.

O'Connell MJ, Kasprow WJ, Rosenheck RA.

Psychiatr Serv. 2017 Feb 1;68(2):203-206. doi: 10.1176/appi.ps.201500276. Epub 2016 Oct 17.

PMID:
27745532
26.

Reliability and Validity of a Newly Developed Measure of Citizenship Among Persons with Mental Illnesses.

O'Connell MJ, Clayton A, Rowe M.

Community Ment Health J. 2017 Apr;53(3):367-374. doi: 10.1007/s10597-016-0054-y. Epub 2016 Oct 6.

PMID:
27714484
27.

School Obesity Prevention Policies and Practices in Minnesota and Student Outcomes: A Longitudinal Cohort Study.

Nanney MS, MacLehose RF, Kubik MY, Davey CS, O'Connell MJ, Grannon KY, Nelson TF.

Am J Prev Med. 2016 Nov;51(5):656-663. doi: 10.1016/j.amepre.2016.05.008. Epub 2016 Jun 16.

28.

R.JIVE for exploration of multi-source molecular data.

O'Connell MJ, Lock EF.

Bioinformatics. 2016 Sep 15;32(18):2877-9. doi: 10.1093/bioinformatics/btw324. Epub 2016 Jun 6.

29.

Transcriptional profiling of the ovine abomasal lymph node reveals a role for timing of the immune response in gastrointestinal nematode resistance.

McRae KM, Good B, Hanrahan JP, McCabe MS, Cormican P, Sweeney T, O'Connell MJ, Keane OM.

Vet Parasitol. 2016 Jul 15;224:96-108. doi: 10.1016/j.vetpar.2016.05.014. Epub 2016 May 17.

30.

Clinical Outcome From Oxaliplatin Treatment in Stage II/III Colon Cancer According to Intrinsic Subtypes: Secondary Analysis of NSABP C-07/NRG Oncology Randomized Clinical Trial.

Song N, Pogue-Geile KL, Gavin PG, Yothers G, Kim SR, Johnson NL, Lipchik C, Allegra CJ, Petrelli NJ, O'Connell MJ, Wolmark N, Paik S.

JAMA Oncol. 2016 Sep 1;2(9):1162-9. doi: 10.1001/jamaoncol.2016.2314.

31.

Reproducibility of circulating endothelial cell enumeration and activation in children and adolescents.

Ryder JR, O'Connell MJ, Rudser KD, Fox CK, Solovey AN, Hebbel RP, Kelly AS.

Biomark Med. 2016 May;10(5):463-71. doi: 10.2217/bmm-2015-0051. Epub 2016 Apr 13.

32.

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference.

Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D.

Genome Biol Evol. 2016 Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261.

33.

Phylogenetic investigation of enteric bovine coronavirus in Ireland reveals partitioning between European and global strains.

Gunn L, Collins PJ, O'Connell MJ, O'Shea H.

Ir Vet J. 2015 Dec 30;68:31. doi: 10.1186/s13620-015-0060-3. eCollection 2015.

34.

Neoadjuvant 5-FU or Capecitabine Plus Radiation With or Without Oxaliplatin in Rectal Cancer Patients: A Phase III Randomized Clinical Trial.

Allegra CJ, Yothers G, O'Connell MJ, Beart RW, Wozniak TF, Pitot HC, Shields AF, Landry JC, Ryan DP, Arora A, Evans LS, Bahary N, Soori G, Eakle JF, Robertson JM, Moore DF Jr, Mullane MR, Marchello BT, Ward PJ, Sharif S, Roh MS, Wolmark N.

J Natl Cancer Inst. 2015 Sep 14;107(11). pii: djv248. doi: 10.1093/jnci/djv248. Print 2015 Nov. Erratum in: J Natl Cancer Inst. 2016 Apr;108(4). pii: djw057. doi: 10.1093/jnci/djw057.

35.

The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data.

McInerney J, Pisani D, O'Connell MJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140323. doi: 10.1098/rstb.2014.0323. Review.

36.

Buprenorphine waivers for physicians.

Weeks WB, O'Connell MJ.

Health Aff (Millwood). 2015 Aug;34(8):1428. doi: 10.1377/hlthaff.2015.0762. No abstract available.

PMID:
26240258
37.

Validation of the brief version of the Recovery Self-Assessment (RSA-B) using Rasch measurement theory.

Barbic SP, Kidd SA, Davidson L, McKenzie K, O'Connell MJ.

Psychiatr Rehabil J. 2015 Dec;38(4):349-58. doi: 10.1037/prj0000139. Epub 2015 Jun 15.

PMID:
26075526
38.

An active second dihydrofolate reductase enzyme is not a feature of rat and mouse, but they do have activity in their mitochondria.

Hughes L, Carton R, Minguzzi S, McEntee G, Deinum EE, O'Connell MJ, Parle-McDermott A.

FEBS Lett. 2015 Jul 8;589(15):1855-62. doi: 10.1016/j.febslet.2015.05.017. Epub 2015 May 14.

39.

Facile one-pot synthesis of highly porous carbon foams for high-performance supercapacitors using template-free direct pyrolysis.

Wang C, O'Connell MJ, Chan CK.

ACS Appl Mater Interfaces. 2015 Apr 29;7(16):8952-60. doi: 10.1021/acsami.5b02453. Epub 2015 Apr 15.

PMID:
25834933
40.

Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response.

Webb AE, Gerek ZN, Morgan CC, Walsh TA, Loscher CE, Edwards SV, O'Connell MJ.

Mol Biol Evol. 2015 Jul;32(7):1717-29. doi: 10.1093/molbev/msv051. Epub 2015 Mar 10.

41.

Impact of age and medical comorbidity on adjuvant treatment outcomes for stage III colon cancer: a pooled analysis of individual patient data from four randomized, controlled trials.

Haller DG, O'Connell MJ, Cartwright TH, Twelves CJ, McKenna EF, Sun W, Saif MW, Lee S, Yothers G, Schmoll HJ.

Ann Oncol. 2015 Apr;26(4):715-24. doi: 10.1093/annonc/mdv003. Epub 2015 Jan 16.

42.

Insights into the evolution of longevity from the bowhead whale genome.

Keane M, Semeiks J, Webb AE, Li YI, Quesada V, Craig T, Madsen LB, van Dam S, Brawand D, Marques PI, Michalak P, Kang L, Bhak J, Yim HS, Grishin NV, Nielsen NH, Heide-Jørgensen MP, Oziolor EM, Matson CW, Church GM, Stuart GW, Patton JC, George JC, Suydam R, Larsen K, López-Otín C, O'Connell MJ, Bickham JW, Thomsen B, de Magalhães JP.

Cell Rep. 2015 Jan 6;10(1):112-22. doi: 10.1016/j.celrep.2014.12.008.

43.

Molecular mechanisms involved in initiation of the DNA damage response.

Barnum KJ, O'Connell MJ.

Mol Cell Oncol. 2015 Jan 23;2(1):e970065. doi: 10.4161/23723548.2014.970065. eCollection 2015 Jan-Mar. Review.

44.

Response to Teladorsagia circumcincta infection in Scottish Blackface lambs with divergent phenotypes for nematode resistance.

McRae KM, Good B, Hanrahan JP, Glynn A, O'Connell MJ, Keane OM.

Vet Parasitol. 2014 Dec 15;206(3-4):200-7.

PMID:
25468019
45.

Effect of adjuvant capecitabine or fluorouracil, with or without oxaliplatin, on survival outcomes in stage III colon cancer and the effect of oxaliplatin on post-relapse survival: a pooled analysis of individual patient data from four randomised controlled trials.

Schmoll HJ, Twelves C, Sun W, O'Connell MJ, Cartwright T, McKenna E, Saif M, Lee S, Yothers G, Haller D.

Lancet Oncol. 2014 Dec;15(13):1481-92. doi: 10.1016/S1470-2045(14)70486-3. Epub 2014 Nov 12.

46.

Evolutionary developmental biology: Ghost locus appears.

McInerney JO, O'Connell MJ.

Nature. 2014 Oct 30;514(7524):570-1. doi: 10.1038/514570a. No abstract available.

PMID:
25355355
47.

Mitochondrial data are not suitable for resolving placental mammal phylogeny.

Morgan CC, Creevey CJ, O'Connell MJ.

Mamm Genome. 2014 Dec;25(11-12):636-47. doi: 10.1007/s00335-014-9544-9. Epub 2014 Sep 20.

PMID:
25239304
48.

Sensory biology. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor.

Baldwin MW, Toda Y, Nakagita T, O'Connell MJ, Klasing KC, Misaka T, Edwards SV, Liberles SD.

Science. 2014 Aug 22;345(6199):929-33. doi: 10.1126/science.1255097.

49.

Functional interplay between cohesin and Smc5/6 complexes.

Tapia-Alveal C, Lin SJ, O'Connell MJ.

Chromosoma. 2014 Oct;123(5):437-45. doi: 10.1007/s00412-014-0474-9. Epub 2014 Jul 1. Review.

50.

A new predictive molecular marker for cetuximab benefit in rectal cancer?

George TJ Jr, O'Connell MJ.

J Natl Cancer Inst. 2014 Jun 23;106(7). pii: dju154. doi: 10.1093/jnci/dju154. Print 2014 Jul. No abstract available.

PMID:
24957075

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