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Items: 1 to 50 of 866

1.

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks.

Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman P, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM.

Genome Res. 2019 Feb 13. pii: gr.239863.118. doi: 10.1101/gr.239863.118. [Epub ahead of print]

PMID:
30760546
2.

Trifurcate Origin of Long Head of Biceps Brachii: A Case Report and Literature Review.

Cutler HS, Tao MA, O'Brien SJ, Taylor SA.

J Orthop Case Rep. 2018 Jul-Aug;8(4):70-73. doi: 10.13107/jocr.2250-0685.1166.

3.

Norovirus strain types found within the second infectious intestinal diseases (IID2) study an analysis of norovirus circulating in the community.

Harris JP, Iturriza-Gomara M, Allen DJ, Kelly S, O'Brien SJ.

BMC Infect Dis. 2019 Jan 25;19(1):87. doi: 10.1186/s12879-019-3706-z.

4.

Climate, human behaviour or environment: individual-based modelling of Campylobacter seasonality and strategies to reduce disease burden.

Rushton SP, Sanderson RA, Diggle PJ, Shirley MDF, Blain AP, Lake I, Maas JA, Reid WDK, Hardstaff J, Williams N, Jones NR, Rigby D, Strachan NJC, Forbes KJ, Hunter PR, Humphrey TJ, O'Brien SJ.

J Transl Med. 2019 Jan 21;17(1):34. doi: 10.1186/s12967-019-1781-y.

5.

Estimating the burden of care home gastroenteritis outbreaks in England, 2014-2016.

Inns T, Clough HE, Harris JP, Vivancos R, Adams N, O'Brien SJ.

BMC Infect Dis. 2019 Jan 5;19(1):12. doi: 10.1186/s12879-018-3642-3.

6.

The use of capture-recapture methods to provide better estimates of the burden of norovirus outbreaks from seafood in England, 2004-2011.

Hardstaff JL, Clough HE, Harris JP, Lowther JA, Lees DN, O'Brien SJ.

Epidemiol Infect. 2018 Dec 4:1-7. doi: 10.1017/S0950268818003217. [Epub ahead of print]

PMID:
30511608
7.

Genome-Wide Evolutionary Analysis of Natural History and Adaptation in the World's Tigers.

Liu YC, Sun X, Driscoll C, Miquelle DG, Xu X, Martelli P, Uphyrkina O, Smith JLD, O'Brien SJ, Luo SJ.

Curr Biol. 2018 Dec 3;28(23):3840-3849.e6. doi: 10.1016/j.cub.2018.09.019. Epub 2018 Oct 25.

PMID:
30482605
8.

Control of norovirus infection.

O'Brien SJ, Sanderson RA, Rushton SP.

Curr Opin Gastroenterol. 2019 Jan;35(1):14-19. doi: 10.1097/MOG.0000000000000491.

PMID:
30346315
9.

Social patterning of telephone health-advice for diarrhoea and vomiting: analysis of 24 million telehealth calls in England.

Adams NL, Rose TC, Elliot AJ, Smith G, Morbey R, Loveridge P, Lewis J, Studdard G, Violato M, O'Brien SJ, Whitehead M, Taylor-Robinson DC, Hawker JI, Barr B.

J Infect. 2019 Feb;78(2):95-100. doi: 10.1016/j.jinf.2018.09.008. Epub 2018 Sep 26.

10.

A spatial and temporal analysis of risk factors associated with sporadic Shiga toxin-producing Escherichia coli O157 infection in England between 2009 and 2015.

Elson R, Grace K, Vivancos R, Jenkins C, Adak GK, O'Brien SJ, Lake IR.

Epidemiol Infect. 2018 Nov;146(15):1928-1939. doi: 10.1017/S095026881800256X. Epub 2018 Sep 12.

PMID:
30205851
11.

Incidence of household transmission of acute gastroenteritis (AGE) in a primary care sentinel network (1992-2017): cross-sectional and retrospective cohort study protocol.

de Lusignan S, Konstantara E, Joy M, Sherlock J, Hoang U, Coyle R, Ferreira F, Jones S, O'Brien SJ.

BMJ Open. 2018 Aug 23;8(8):e022524. doi: 10.1136/bmjopen-2018-022524.

12.

Foodborne and Food-Handler Norovirus Outbreaks: A Systematic Review.

Hardstaff JL, Clough HE, Lutje V, McIntyre KM, Harris JP, Garner P, O'Brien SJ.

Foodborne Pathog Dis. 2018 Oct;15(10):589-597. doi: 10.1089/fpd.2018.2452. Epub 2018 Aug 15.

13.

Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G.

Nat Ecol Evol. 2018 Sep;2(9):1514. doi: 10.1038/s41559-018-0664-6.

PMID:
30104754
14.

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G.

Nat Ecol Evol. 2018 Sep;2(9):1479-1491. doi: 10.1038/s41559-018-0611-6. Epub 2018 Aug 6. Erratum in: Nat Ecol Evol. 2018 Aug 13;:.

PMID:
30082739
15.

Temporal expression of circulating miRNA after severe injury.

Galbraith NJ, O'Brien SJ, Walker SP, Gardner SA, Polk HC Jr, Barnes SL.

Surgery. 2018 Oct;164(4):665-672. doi: 10.1016/j.surg.2018.05.042. Epub 2018 Aug 1.

PMID:
30077391
16.

Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.

Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ.

PLoS One. 2018 Jul 11;13(7):e0200423. doi: 10.1371/journal.pone.0200423. eCollection 2018.

17.

Exposures associated with infection with Cryptosporidium in industrialised countries: a systematic review protocol.

McKerr C, O'Brien SJ, Chalmers RM, Vivancos R, Christley RM.

Syst Rev. 2018 May 2;7(1):70. doi: 10.1186/s13643-018-0731-8.

18.

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Hernández YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Núñez A, Brandt JR, Silva F, Hernández-Martich JD, Majeske AJ, Antunes A, Roca AL, O'Brien SJ, Martínez-Cruzado JC, Oleksyk TK.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy025.

19.

Marker of proliferation Ki-67 expression is associated with transforming growth factor beta 1 and can predict the prognosis of patients with hepatic B virus-related hepatocellular carcinoma.

Yang C, Su H, Liao X, Han C, Yu T, Zhu G, Wang X, Winkler CA, O'Brien SJ, Peng T.

Cancer Manag Res. 2018 Apr 10;10:679-696. doi: 10.2147/CMAR.S162595. eCollection 2018.

20.

How timely closure can reduce outbreak duration: gastroenteritis in care homes in North West England, 2012-2016.

Inns T, Keenan A, Huyton R, Harris J, Iturriza-Gomara M, O'Brien SJ, Vivancos R.

BMC Public Health. 2018 Apr 12;18(1):488. doi: 10.1186/s12889-018-5413-x.

21.

Identified OAS3 gene variants associated with coexistence of HBsAg and anti-HBs in chronic HBV infection.

Wang S, Wang J, Fan MJ, Li TY, Pan H, Wang X, Liu HK, Lin QF, Zhang JG, Guan LP, Zhernakova DV, O'Brien SJ, Feng ZR, Chang L, Dai EH, Lu JH, Xi HL, Zeng Z, Yu YY, Wang BB.

J Viral Hepat. 2018 Aug;25(8):904-910. doi: 10.1111/jvh.12899. Epub 2018 May 29.

PMID:
29582521
22.

Whole-Genome Analysis of Mycobacterium tuberculosis from Patients with Tuberculous Spondylitis, Russia.

Chernyaeva E, Rotkevich M, Krasheninnikova K, Yurchenko A, Vyazovaya A, Mokrousov I, Solovieva N, Zhuravlev V, Yablonsky P, O'Brien SJ.

Emerg Infect Dis. 2018 Mar;24(3):579-583. doi: 10.3201/eid2403.170151.

23.

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments.

Borges R, Johnson WE, O'Brien SJ, Gomes C, Heesy CP, Antunes A.

BMC Genomics. 2018 Feb 5;19(1):121. doi: 10.1186/s12864-017-4417-8.

24.

Long Head of Biceps Tendon Management: a Survey of the American Shoulder and Elbow Surgeons.

Corpus KT, Garcia GH, Liu JN, Dines DM, O'Brien SJ, Dines JS, Taylor SA.

HSS J. 2018 Feb;14(1):34-40. doi: 10.1007/s11420-017-9575-3. Epub 2017 Oct 13.

25.

The role of the miR-200 family in epithelial-mesenchymal transition in colorectal cancer: a systematic review.

O'Brien SJ, Carter JV, Burton JF, Oxford BG, Schmidt MN, Hallion JC, Galandiuk S.

Int J Cancer. 2018 Jun 15;142(12):2501-2511. doi: 10.1002/ijc.31282. Epub 2018 Feb 21.

PMID:
29388209
26.

Relationship between socioeconomic status and gastrointestinal infections in developed countries: A systematic review and meta-analysis.

Adams NL, Rose TC, Hawker J, Violato M, O'Brien SJ, Barr B, Howard VJK, Whitehead M, Harris R, Taylor-Robinson DC.

PLoS One. 2018 Jan 23;13(1):e0191633. doi: 10.1371/journal.pone.0191633. eCollection 2018. Review.

27.

Robust forensic matching of confiscated horns to individual poached African rhinoceros.

Harper C, Ludwig A, Clarke A, Makgopela K, Yurchenko A, Guthrie A, Dobrynin P, Tamazian G, Emslie R, van Heerden M, Hofmeyr M, Potter R, Roets J, Beytell P, Otiende M, Kariuki L, du Toit R, Anderson N, Okori J, Antonik A, Koepfli KP, Thompson P, O'Brien SJ.

Curr Biol. 2018 Jan 8;28(1):R13-R14. doi: 10.1016/j.cub.2017.11.005.

28.

Biceps Tenodesis: A Comparison of Tendon-to-Bone and Tendon-to-Tendon Healing in a Rat Model.

Urch E, Taylor SA, Ramkumar PN, Enker P, Doty SB, White AE, Delos D, Shorey ME, O'Brien SJ.

Am J Orthop (Belle Mead NJ). 2017 Nov/Dec;46(6):E388-E395.

PMID:
29309450
29.

The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth.

Gaubert P, Antunes A, Meng H, Miao L, Peigné S, Justy F, Njiokou F, Dufour S, Danquah E, Alahakoon J, Verheyen E, Stanley WT, O'Brien SJ, Johnson WE, Luo SJ.

J Hered. 2018 May 11;109(4):347-359. doi: 10.1093/jhered/esx097.

PMID:
29140441
30.

Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol.

Inns T, Pulawska-Czub A, Harris JP, Vivancos R, Read JM, Beeching NJ, Allen DJ, Iturriza-Gomara M, O'Brien SJ.

BMJ Open. 2017 Nov 3;7(11):e018867. doi: 10.1136/bmjopen-2017-018867.

31.

Spatio-temporal models to determine association between Campylobacter cases and environment.

Sanderson RA, Maas JA, Blain AP, Gorton R, Ward J, O'Brien SJ, Hunter PR, Rushton SP.

Int J Epidemiol. 2018 Feb 1;47(1):202-216. doi: 10.1093/ije/dyx217.

32.

Retrospective Observational Study of Atypical Winter Respiratory Illness Season Using Real-Time Syndromic Surveillance, England, 2014-15.

Smith S, Morbey R, Pebody RG, Hughes TC, de Lusignan S, Yeates FA, Thomas H, O'Brien SJ, Smith GE, Elliot AJ.

Emerg Infect Dis. 2017 Nov;23(11):1834-1842. doi: 10.3201/eid2311.161632.

33.

Socioeconomic status and infectious intestinal disease in the community: a longitudinal study (IID2 study).

Adams NL, Rose TC, Hawker J, Violato M, O'Brien SJ, Whitehead M, Barr B, Taylor-Robinson DC.

Eur J Public Health. 2018 Feb 1;28(1):134-138. doi: 10.1093/eurpub/ckx091.

34.

New high copy tandem repeat in the content of the chicken W chromosome.

Komissarov AS, Galkina SA, Koshel EI, Kulak MM, Dyomin AG, O'Brien SJ, Gaginskaya ER, Saifitdinova AF.

Chromosoma. 2018 Mar;127(1):73-83. doi: 10.1007/s00412-017-0646-5. Epub 2017 Sep 26.

PMID:
28951974
35.

Preoperative transcatheter arterial chemotherapy may suppress oxidative stress in hepatocellular carcinoma cells and reduce the risk of short-term relapse.

Su H, Zhu G, Djaja P KI, Lin Y, Gong Y, Liu X, Li J, Liu Z, Qin X, Li L, Liu T, Lu Z, Wei M, Yan L, Winkler CA, O'Brien SJ, Li J, Xiao K, Peng T.

Oncotarget. 2017 May 7;8(33):54402-54415. doi: 10.18632/oncotarget.17660. eCollection 2017 Aug 15.

36.

X Chromosome Evolution in Cetartiodactyla.

Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS.

Genes (Basel). 2017 Aug 31;8(9). pii: E216. doi: 10.3390/genes8090216.

37.

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities.

O'Brien SJ, Johnson WE, Driscoll CA, Dobrynin P, Marker L.

J Hered. 2017 Sep 1;108(6):671-677. doi: 10.1093/jhered/esx047. Review.

38.

Aldehyde dehydrogenase 1 (ALDH1) isoform expression and potential clinical implications in hepatocellular carcinoma.

Yang CK, Wang XK, Liao XW, Han CY, Yu TD, Qin W, Zhu GZ, Su H, Yu L, Liu XG, Lu SC, Chen ZW, Liu Z, Huang KT, Liu ZT, Liang Y, Huang JL, Xiao KY, Peng MH, Winkle CA, O'Brien SJ, Peng T.

PLoS One. 2017 Aug 8;12(8):e0182208. doi: 10.1371/journal.pone.0182208. eCollection 2017.

39.

Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E.

Sci Adv. 2017 Jul 19;3(7):e1700299. doi: 10.1126/sciadv.1700299. eCollection 2017 Jul.

40.

A Modification of the Active Compression Test for the Shoulder Biceps-Labrum Complex.

Urch E, Taylor SA, Zitkovsky H, O'Brien SJ, Dines JS, Dines DM.

Arthrosc Tech. 2017 Jun 26;6(3):e859-e862. doi: 10.1016/j.eats.2017.02.017. eCollection 2017 Jun.

41.

Genome-Wide Association Study of MKI67 Expression and its Clinical Implications in HBV-Related Hepatocellular Carcinoma in Southern China.

Yang CK, Yu TD, Han CY, Qin W, Liao XW, Yu L, Liu XG, Zhu GZ, Su H, Lu SC, Chen ZW, Liu Z, Huang KT, Liu ZT, Liang Y, Huang JL, Mo ZN, Qin X, Li L, Xiao KY, Peng MH, Winkle CA, O'Brien SJ, Peng T.

Cell Physiol Biochem. 2017;42(4):1342-1357. doi: 10.1159/000478963. Epub 2017 Jul 13.

42.

Developing a Multidisciplinary Syndromic Surveillance Academic Research Program in the United Kingdom: Benefits for Public Health Surveillance.

Elliot AJ, Morbey R, Edeghere O, Lake IR, Colón-González FJ, Vivancos R, Rubin GJ, O'Brien SJ, Smith GE.

Public Health Rep. 2017 Jul/Aug;132(1_suppl):111S-115S. doi: 10.1177/0033354917706953. No abstract available.

43.

Estimating the prevalence of food risk increasing behaviours in UK kitchens.

Jones AK, Cross P, Burton M, Millman C, O'Brien SJ, Rigby D.

PLoS One. 2017 Jun 28;12(6):e0175816. doi: 10.1371/journal.pone.0175816. eCollection 2017.

44.

Socioeconomic status is associated with symptom severity and sickness absence in people with infectious intestinal disease in the UK.

Rose TC, Adams NL, Barr B, Hawker J, O'Brien SJ, Violato M, Whitehead M, Taylor-Robinson DC.

BMC Infect Dis. 2017 Jun 23;17(1):447. doi: 10.1186/s12879-017-2551-1.

45.

"Catch 22": Biosecurity awareness, interpretation and practice amongst poultry catchers.

Millman C, Christley R, Rigby D, Dennis D, O'Brien SJ, Williams N.

Prev Vet Med. 2017 Jun 1;141:22-32. doi: 10.1016/j.prevetmed.2017.04.002. Epub 2017 Apr 14.

46.

Novel Sampling Method for Assessing Human-Pathogen Interactions in the Natural Environment Using Boot Socks and Citizen Scientists, with Application to Campylobacter Seasonality.

Jones NR, Millman C, van der Es M, Hukelova M, Forbes KJ, Glover C, Haldenby S, Hunter PR, Jackson K, O'Brien SJ, Rigby D, Strachan NJC, Williams N, Lake IR; ENIGMA Consortium.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00162-17. doi: 10.1128/AEM.00162-17. Print 2017 Jul 15.

47.

Towards an integrated food safety surveillance system: a simulation study to explore the potential of combining genomic and epidemiological metadata.

Hill AA, Crotta M, Wall B, Good L, O'Brien SJ, Guitian J.

R Soc Open Sci. 2017 Mar 29;4(3):160721. doi: 10.1098/rsos.160721. eCollection 2017 Mar.

48.

The Effect of Concomitant Biceps Tenodesis on Reoperation Rates After Rotator Cuff Repair: A Review of a Large Private-Payer Database From 2007 to 2014.

Erickson BJ, Basques BA, Griffin JW, Taylor SA, O'Brien SJ, Verma NN, Romeo AA.

Arthroscopy. 2017 Jul;33(7):1301-1307.e1. doi: 10.1016/j.arthro.2017.01.030. Epub 2017 Mar 20.

PMID:
28336230
49.

Risk Factors for Revision Surgery After Superior Labral Anterior-Posterior Repair: A National Perspective.

Taylor SA, Degen RM, White AE, McCarthy MM, Gulotta LV, O'Brien SJ, Werner BC.

Am J Sports Med. 2017 Jun;45(7):1640-1644. doi: 10.1177/0363546517691950. Epub 2017 Mar 10.

PMID:
28282498
50.

Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.

Xie W, Agniel D, Shevchenko A, Malov SV, Svitin A, Cherkasov N, Baum MK, Campa A, Gaseitsiwe S, Bussmann H, Makhema J, Marlink R, Novitsky V, Lee TH, Cai T, O'Brien SJ, Essex M.

AIDS Res Hum Retroviruses. 2017 Jun;33(6):597-609. doi: 10.1089/AID.2016.0017. Epub 2017 Apr 6.

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