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Chromosomal phylogeny and comparative chromosome painting among Neacomys species (Rodentia, Sigmodontinae) from eastern Amazonia.

Oliveira da Silva W, Pieczarka JC, Rodrigues da Costa MJ, Ferguson-Smith MA, O'Brien PCM, Mendes-Oliveira AC, Rossi RV, Nagamachi CY.

BMC Evol Biol. 2019 Oct 10;19(1):184. doi: 10.1186/s12862-019-1515-z.


Chromosome Translocations as a Driver of Diversification in Mole Voles Ellobius (Rodentia, Mammalia).

Romanenko SA, Lyapunova EA, Saidov AS, O'Brien PCM, Serdyukova NA, Ferguson-Smith MA, Graphodatsky AS, Bakloushinskaya I.

Int J Mol Sci. 2019 Sep 10;20(18). pii: E4466. doi: 10.3390/ijms20184466.


Rapid chromosomal evolution in enigmatic mammal with XX in both sexes, the Alay mole vole Ellobiusalaicus Vorontsov et al., 1969 (Mammalia, Rodentia).

Bakloushinskaya I, Lyapunova EA, Saidov AS, Romanenko SA, O'Brien PCM, Serdyukova NA, Ferguson-Smith MA, Matveevsky S, Bogdanov AS.

Comp Cytogenet. 2019 Jun 20;13(2):147-177. doi: 10.3897/CompCytogen.v13i2.34224. eCollection 2019.


Genomic Organization of the Repetitive Sequences in Centropomus undecimalis (Perciformes, Centropomidae): Implications for Hybridization and Aquaculture Programs.

Sousa RPC, Furo IO, O'Brien PCM, Oliveira-Filho AB, Vallinoto M, de Oliveira EH, Silva-Oliveira GC.

Zebrafish. 2019 Aug;16(4):415-420. doi: 10.1089/zeb.2018.1724. Epub 2019 Jun 12.


Karyotype, evolution and phylogenetic reconstruction in Micronycterinae bats with implications for the ancestral karyotype of Phyllostomidae.

Benathar TCM, Nagamachi CY, Rodrigues LRR, O'Brien PCM, Ferguson-Smith MA, Yang F, Pieczarka JC.

BMC Evol Biol. 2019 May 7;19(1):98. doi: 10.1186/s12862-019-1421-4.


Squamate Chromosome Size and GC Content Assessed by Flow Karyotyping.

Kasai F, O'Brien PCM, Ferguson-Smith MA.

Cytogenet Genome Res. 2019;157(1-2):46-52. doi: 10.1159/000497265. Epub 2019 Mar 23.


Chromosomal polymorphism and comparative chromosome painting in the rufous-collared sparrow (Zonotrichia capensis).

Bülau SE, Kretschmer R, Gunski RJ, Garnero ADV, O'Brien PCM, Ferguson-Smith MA, Oliveira EHC, Freitas TRO.

Genet Mol Biol. 2018 Oct-Dec;41(4):799-805. doi: 10.1590/1678-4685-GMB-2017-0367. Epub 2018 Nov 14.


Chromosome Painting in Neotropical Long- and Short-Tailed Parrots (Aves, Psittaciformes): Phylogeny and Proposal for a Putative Ancestral Karyotype for Tribe Arini.

de Oliveira Furo I, Kretschmer R, O'Brien PCM, Pereira JC, Del Valle Garnero A, Gunski RJ, Ferguson-Smith MA, de Oliveira EHC.

Genes (Basel). 2018 Oct 10;9(10). pii: E491. doi: 10.3390/genes9100491.


Marsupial chromosome DNA content and genome size assessed from flow karyotypes: invariable low autosomal GC content.

Kasai F, O'Brien PCM, Pereira JC, Ferguson-Smith MA.

R Soc Open Sci. 2018 Aug 29;5(8):171539. doi: 10.1098/rsos.171539. eCollection 2018 Aug.


First report on B chromosome content in a reptilian species: the case of Anolis carolinensis.

Kichigin IG, Lisachov AP, Giovannotti M, Makunin AI, Kabilov MR, O'Brien PCM, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Mol Genet Genomics. 2019 Feb;294(1):13-21. doi: 10.1007/s00438-018-1483-9. Epub 2018 Aug 27.


Comparative chromosome painting in Columbidae (Columbiformes) reinforces divergence in Passerea and Columbea.

Kretschmer R, de Oliveira Furo I, Gunski RJ, Del Valle Garnero A, Pereira JC, O'Brien PCM, Ferguson-Smith MA, de Oliveira EHC, de Freitas TRO.

Chromosome Res. 2018 Sep;26(3):211-223. doi: 10.1007/s10577-018-9580-5. Epub 2018 Jun 7.


Chromosomal evolution and phylogeny in the Nullicauda group (Chiroptera, Phyllostomidae): evidence from multidirectional chromosome painting.

Gomes AJB, Nagamachi CY, Rodrigues LRR, Ferguson-Smith MA, Yang F, O'Brien PCM, Pieczarka JC.

BMC Evol Biol. 2018 Apr 25;18(1):62. doi: 10.1186/s12862-018-1176-3.


Multidirectional chromosome painting in Synallaxis frontalis (Passeriformes, Furnariidae) reveals high chromosomal reorganization, involving fissions and inversions.

Kretschmer R, de Lima VLC, de Souza MS, Costa AL, O'Brien PCM, Ferguson-Smith MA, de Oliveira EHC, Gunski RJ, Garnero ADV.

Comp Cytogenet. 2018 Mar 13;12(1):97-110. doi: 10.3897/CompCytogen.v12i1.22344. eCollection 2018.


Outcomes and relapse patterns following chemotherapy in advanced Hodgkin lymphoma in the positron emission tomography era.

Lapuz C, Enjeti AK, O'Brien PC, Capp AL, Holliday EG, Gupta SA.

Blood Lymphat Cancer. 2018 Apr 18;8:13-20. doi: 10.2147/BLCTT.S160404. eCollection 2018.


Chromosome Painting in Tyrant Flycatchers Confirms a Set of Inversions Shared by Oscines and Suboscines (Aves, Passeriformes).

Rodrigues BS, Kretschmer R, Gunski RJ, Garnero ADV, O'Brien PCM, Ferguson-Smith M, de Oliveira EHC.

Cytogenet Genome Res. 2017;153(4):205-212. doi: 10.1159/000486975. Epub 2018 Feb 21.


Extensive Karyotype Reorganization in the Fish Gymnotus arapaima (Gymnotiformes, Gymnotidae) Highlighted by Zoo-FISH Analysis.

Machado MA, Pieczarka JC, Silva FHR, O'Brien PCM, Ferguson-Smith MA, Nagamachi CY.

Front Genet. 2018 Jan 26;9:8. doi: 10.3389/fgene.2018.00008. eCollection 2018.


Chromosomal diversity and molecular divergence among three undescribed species of Neacomys (Rodentia, Sigmodontinae) separated by Amazonian rivers.

Oliveira Da Silva W, Pieczarka JC, Ferguson-Smith MA, O'Brien PCM, Mendes-Oliveira AC, Sampaio I, Carneiro J, Nagamachi CY.

PLoS One. 2017 Aug 1;12(8):e0182218. doi: 10.1371/journal.pone.0182218. eCollection 2017.


Oecomys catherinae (Sigmodontinae, Cricetidae): Evidence for chromosomal speciation?

Malcher SM, Pieczarka JC, Geise L, Rossi RV, Pereira AL, O'Brien PCM, Asfora PH, Fonsêca da Silva V, Sampaio MI, Ferguson-Smith MA, Nagamachi CY.

PLoS One. 2017 Jul 20;12(7):e0181434. doi: 10.1371/journal.pone.0181434. eCollection 2017.


Chromosome Painting in Trogon s. surrucura (Aves, Trogoniformes) Reveals a Karyotype Derived by Chromosomal Fissions, Fusions, and Inversions.

Degrandi TM, Del Valle Garnero A, O'Brien PCM, Ferguson-Smith MA, Kretschmer R, de Oliveira EHC, Gunski RJ.

Cytogenet Genome Res. 2017;151(4):208-215. doi: 10.1159/000471782. Epub 2017 May 13.


Chromosomal Mapping of Repetitive DNAs in Myiopsitta monachus and Amazona aestiva (Psittaciformes, Psittacidae) with Emphasis on the Sex Chromosomes.

de Oliveira Furo I, Kretschmer R, Dos Santos MS, de Lima Carvalho CA, Gunski RJ, O'Brien PCM, Ferguson-Smith MA, Cioffi MB, de Oliveira EHC.

Cytogenet Genome Res. 2017;151(3):151-160. doi: 10.1159/000464458. Epub 2017 Mar 31.


Rapid Karyotype Evolution in Lasiopodomys Involved at Least Two Autosome - Sex Chromosome Translocations.

Gladkikh OL, Romanenko SA, Lemskaya NA, Serdyukova NA, O'Brien PC, Kovalskaya JM, Smorkatcheva AV, Golenishchev FN, Perelman PL, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS.

PLoS One. 2016 Dec 9;11(12):e0167653. doi: 10.1371/journal.pone.0167653. eCollection 2016.


Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing.

Makunin AI, Kichigin IG, Larkin DM, O'Brien PC, Ferguson-Smith MA, Yang F, Proskuryakova AA, Vorobieva NV, Chernyaeva EN, O'Brien SJ, Graphodatsky AS, Trifonov VA.

BMC Genomics. 2016 Aug 11;17(1):618. doi: 10.1186/s12864-016-2933-6.


Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA.

Kichigin IG, Giovannotti M, Makunin AI, Ng BL, Kabilov MR, Tupikin AE, Barucchi VC, Splendiani A, Ruggeri P, Rens W, O'Brien PC, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Mol Genet Genomics. 2016 Oct;291(5):1955-66. doi: 10.1007/s00438-016-1230-z. Epub 2016 Jul 18.


Chromosomal phylogeny of Vampyressine bats (Chiroptera, Phyllostomidae) with description of two new sex chromosome systems.

Gomes AJ, Nagamachi CY, Rodrigues LR, Benathar TC, Ribas TF, O'Brien PC, Yang F, Ferguson-Smith MA, Pieczarka JC.

BMC Evol Biol. 2016 Jun 4;16(1):119. doi: 10.1186/s12862-016-0689-x.


New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae).

Giovannotti M, Trifonov VA, Paoletti A, Kichigin IG, O'Brien PC, Kasai F, Giovagnoli G, Ng BL, Ruggeri P, Cerioni PN, Splendiani A, Pereira JC, Olmo E, Rens W, Caputo Barucchi V, Ferguson-Smith MA.

Chromosoma. 2017 Mar;126(2):245-260. doi: 10.1007/s00412-016-0585-6. Epub 2016 Mar 22.


A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD.

Genome Res. 2016 Apr;26(4):530-40. doi: 10.1101/gr.199448.115. Epub 2016 Mar 2.


Extensive Chromosomal Reorganization in the Evolution of New World Muroid Rodents (Cricetidae, Sigmodontinae): Searching for Ancestral Phylogenetic Traits.

Pereira AL, Malcher SM, Nagamachi CY, O'Brien PC, Ferguson-Smith MA, Mendes-Oliveira AC, Pieczarka JC.

PLoS One. 2016 Jan 22;11(1):e0146179. doi: 10.1371/journal.pone.0146179. eCollection 2016.


Correction: Cytotaxonomy of Eurypyga helias (Gruiformes, Eurypygidae): First Karyotypic Description and Phylogenetic Proximity with Rynochetidae.

Furo Ide O, Monte AA, dos Santos Mda S, Tagliarini MM, O'Brien PC, Ferguson-Smith MA, de Oliveira EH.

PLoS One. 2016 Jan 14;11(1):e0147458. doi: 10.1371/journal.pone.0147458. eCollection 2016. No abstract available.


Clues on Syntenic Relationship among Some Species of Oryzomyini and Akodontini Tribes (Rodentia: Sigmodontinae).

Suárez P, Nagamachi CY, Lanzone C, Malleret MM, O'Brien PC, Ferguson-Smith MA, Pieczarka JC.

PLoS One. 2015 Dec 7;10(12):e0143482. doi: 10.1371/journal.pone.0143482. eCollection 2015.


Cytotaxonomy of Eurypyga helias (Gruiformes, Eurypygidae): First Karyotypic Description and Phylogenetic Proximity with Rynochetidae.

Furo Ide O, Monte AA, dos Santos Mda S, Tagliarini MM, O'Brien PC, Ferguson-Smith MA, de Oliveira EH.

PLoS One. 2015 Dec 1;10(12):e0143982. doi: 10.1371/journal.pone.0143982. eCollection 2015. Erratum in: PLoS One. 2016;11(1):e0147458.


Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus.

Romanenko SA, Lemskaya NA, Trifonov VA, Serdyukova NA, O'Brien PC, Bulatova NSh, Golenishchev FN, Ferguson-Smith MA, Yang F, Graphodatsky AS.

Chromosome Res. 2016 May;24(2):145-59. doi: 10.1007/s10577-015-9504-6. Epub 2015 Nov 26.


Multidirectional chromosome painting substantiates the occurrence of extensive genomic reshuffling within Accipitriformes.

Nie W, O'Brien PC, Fu B, Wang J, Su W, He K, Bed'Hom B, Volobouev V, Ferguson-Smith MA, Dobigny G, Yang F.

BMC Evol Biol. 2015 Sep 26;15:205. doi: 10.1186/s12862-015-0484-0.


On the Origin and Evolution of the Extant System of B Chromosomes in Oryzomyini Radiation (Rodentia, Sigmodontinae).

Ventura K, O'Brien PC, do Nascimento Moreira C, Yonenaga-Yassuda Y, Ferguson-Smith MA.

PLoS One. 2015 Aug 25;10(8):e0136663. doi: 10.1371/journal.pone.0136663. eCollection 2015.


Comparative Chromosome Painting and NOR Distribution Suggest a Complex Hybrid Origin of Triploid Lepidodactylus lugubris (Gekkonidae).

Trifonov VA, Paoletti A, Caputo Barucchi V, Kalinina T, O'Brien PC, Ferguson-Smith MA, Giovannotti M.

PLoS One. 2015 Jul 6;10(7):e0132380. doi: 10.1371/journal.pone.0132380. eCollection 2015.


Intrachromosomal rearrangements in two representatives of the genus Saltator (Thraupidae, Passeriformes) and the occurrence of heteromorphic Z chromosomes.

dos Santos Mda S, Kretschmer R, Silva FA, Ledesma MA, O'Brien PC, Ferguson-Smith MA, Del Valle Garnero A, de Oliveira EH, Gunski RJ.

Genetica. 2015 Oct;143(5):535-43. doi: 10.1007/s10709-015-9851-4. Epub 2015 Jun 20.


Chromosome Painting in Vanellus chilensis: Detection of a Fusion Common to Clade Charadrii (Charadriiformes).

Kretschmer R, Gunski RJ, del Valle Garnero A, O'Brien PC, Ferguson-Smith MA, Ochotorena de Freitas TR, Correa de Oliveira EH.

Cytogenet Genome Res. 2015;146(1):58-63. doi: 10.1159/000431387. Epub 2015 Jun 16.


Chromosomal Diversity and Karyotype Evolution in South American Macaws (Psittaciformes, Psittacidae).

de Oliveira Furo I, Kretschmer R, O'Brien PC, Ferguson-Smith MA, de Oliveira EH.

PLoS One. 2015 Jun 18;10(6):e0130157. doi: 10.1371/journal.pone.0130157. eCollection 2015.


A First Generation Comparative Chromosome Map between Guinea Pig (Cavia porcellus) and Humans.

Romanenko SA, Perelman PL, Trifonov VA, Serdyukova NA, Li T, Fu B, O'Brien PC, Ng BL, Nie W, Liehr T, Stanyon R, Graphodatsky AS, Yang F.

PLoS One. 2015 May 26;10(5):e0127937. doi: 10.1371/journal.pone.0127937. eCollection 2015.


Phylogenetic reconstruction by cross-species chromosome painting and G-banding in four species of Phyllostomini tribe (Chiroptera, Phyllostomidae) in the Brazilian Amazon: an independent evidence for monophyly.

Ribas TF, Rodrigues LR, Nagamachi CY, Gomes AJ, Rissino Jd, O'Brien PC, Yang F, Ferguson-Smith MA, Pieczarka JC.

PLoS One. 2015 Mar 25;10(3):e0122845. doi: 10.1371/journal.pone.0122845. eCollection 2015.


Comparative chromosome painting in six species of Oligoryzomys (Rodentia, Sigmodontinae) and the karyotype evolution of the genus.

Di-Nizo CB, Ventura K, Ferguson-Smith MA, O'Brien PC, Yonenaga-Yassuda Y, Silva MJ.

PLoS One. 2015 Feb 6;10(2):e0117579. doi: 10.1371/journal.pone.0117579. eCollection 2015.


Molecular cytogenetic characterization of multiple intrachromosomal rearrangements in two representatives of the genus Turdus (Turdidae, Passeriformes).

Kretschmer R, Gunski RJ, Garnero Adel V, Furo Ide O, O'Brien PC, Ferguson-Smith MA, de Oliveira EH.

PLoS One. 2014 Jul 24;9(7):e103338. doi: 10.1371/journal.pone.0103338. eCollection 2014.


Two new cytotypes reinforce that Micronycteris hirsuta Peters, 1869 does not represent a monotypic taxon.

Ribas TF, Rodrigues LR, Nagamachi CY, Gomes AJ, Benathar TC, O'Brien PC, Yang F, Ferguson-Smith MA, Pieczarka JC.

BMC Genet. 2013 Dec 20;14:119. doi: 10.1186/1471-2156-14-119.


Chromosome painting reveals multiple rearrangements between Gymnotus capanema and Gymnotus carapo (Gymnotidae, Gymnotiformes).

Nagamachi CY, Pieczarka JC, Milhomem SS, Batista JA, O'Brien PC, Ferguson-Smith MA.

Cytogenet Genome Res. 2013;141(2-3):163-8. doi: 10.1159/000354988. Epub 2013 Sep 28.


Afrotheria genome; overestimation of genome size and distinct chromosome GC content revealed by flow karyotyping.

Kasai F, O'Brien PC, Ferguson-Smith MA.

Genomics. 2013 Nov-Dec;102(5-6):468-71. doi: 10.1016/j.ygeno.2013.09.002. Epub 2013 Sep 19.


Chromosome painting in three species of buteoninae: a cytogenetic signature reinforces the monophyly of South American species.

de Oliveira EH, Tagliarini MM, dos Santos MS, O'Brien PC, Ferguson-Smith MA.

PLoS One. 2013 Jul 26;8(7):e70071. doi: 10.1371/journal.pone.0070071. Print 2013.


Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus).

Trifonov VA, Dementyeva PV, Larkin DM, O'Brien PC, Perelman PL, Yang F, Ferguson-Smith MA, Graphodatsky AS.

BMC Biol. 2013 Aug 6;11:90. doi: 10.1186/1741-7007-11-90.


The bat genome: GC-biased small chromosomes associated with reduction in genome size.

Kasai F, O'Brien PC, Ferguson-Smith MA.

Chromosoma. 2013 Dec;122(6):535-40. doi: 10.1007/s00412-013-0426-9. Epub 2013 Jul 24.


Dosimetric comparison of optimization methods for multichannel intracavitary brachytherapy for superficial vaginal tumors.

Lapuz C, Dempsey C, Capp A, O'Brien PC.

Brachytherapy. 2013 Nov-Dec;12(6):637-44. doi: 10.1016/j.brachy.2013.04.009. Epub 2013 Jul 11.


Comparative analysis of sex chromosomes in Leporinus species (Teleostei, Characiformes) using chromosome painting.

Parise-Maltempi PP, da Silva EL, Rens W, Dearden F, O'Brien PC, Trifonov V, Ferguson-Smith MA.

BMC Genet. 2013 Jul 3;14:60. doi: 10.1186/1471-2156-14-60.


Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution.

Li G, Davis BW, Raudsepp T, Pearks Wilkerson AJ, Mason VC, Ferguson-Smith M, O'Brien PC, Waters PD, Murphy WJ.

Genome Res. 2013 Sep;23(9):1486-95. doi: 10.1101/gr.154286.112. Epub 2013 Jun 20.

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