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Items: 12

1.

Posterior parietal influences on visual network specialization during development: An fMRI study of functional connectivity in children ages 9 to 12.

O'Rawe JF, Huang AS, Klein DN, Leung HC.

Neuropsychologia. 2019 Apr;127:158-170. doi: 10.1016/j.neuropsychologia.2019.03.001. Epub 2019 Mar 5.

PMID:
30849407
2.

Model testing for distinctive functional connectivity gradients with resting-state fMRI data.

O'Rawe JF, Ide JS, Leung HC.

Neuroimage. 2019 Jan 15;185:102-110. doi: 10.1016/j.neuroimage.2018.10.022. Epub 2018 Oct 10.

PMID:
30315909
3.

Preschool negative emotionality predicts activity and connectivity of the fusiform face area and amygdala in later childhood.

Kann SJ, O'Rawe JF, Huang AS, Klein DN, Leung HC.

Soc Cogn Affect Neurosci. 2017 Sep 1;12(9):1511-1519. doi: 10.1093/scan/nsx079.

4.

Indel variant analysis of short-read sequencing data with Scalpel.

Fang H, Bergmann EA, Arora K, Vacic V, Zody MC, Iossifov I, O'Rawe JA, Wu Y, Jimenez Barron LT, Rosenbaum J, Ronemus M, Lee YH, Wang Z, Dikoglu E, Jobanputra V, Lyon GJ, Wigler M, Schatz MC, Narzisi G.

Nat Protoc. 2016 Dec;11(12):2529-2548. doi: 10.1038/nprot.2016.150. Epub 2016 Nov 17.

5.

Genome-wide variant analysis of simplex autism families with an integrative clinical-bioinformatics pipeline.

Jiménez-Barrón LT, O'Rawe JA, Wu Y, Yoon M, Fang H, Iossifov I, Lyon GJ.

Cold Spring Harb Mol Case Stud. 2015 Oct;1(1):a000422. doi: 10.1101/mcs.a000422.

6.

TAF1 Variants Are Associated with Dysmorphic Features, Intellectual Disability, and Neurological Manifestations.

O'Rawe JA, Wu Y, Dörfel MJ, Rope AF, Au PY, Parboosingh JS, Moon S, Kousi M, Kosma K, Smith CS, Tzetis M, Schuette JL, Hufnagel RB, Prada CE, Martinez F, Orellana C, Crain J, Caro-Llopis A, Oltra S, Monfort S, Jiménez-Barrón LT, Swensen J, Ellingwood S, Smith R, Fang H, Ospina S, Stegmann S, Den Hollander N, Mittelman D, Highnam G, Robison R, Yang E, Faivre L, Roubertie A, Rivière JB, Monaghan KG, Wang K, Davis EE, Katsanis N, Kalscheuer VM, Wang EH, Metcalfe K, Kleefstra T, Innes AM, Kitsiou-Tzeli S, Rosello M, Keegan CE, Lyon GJ.

Am J Hum Genet. 2015 Dec 3;97(6):922-32. doi: 10.1016/j.ajhg.2015.11.005.

7.

SeqHBase: a big data toolset for family based sequencing data analysis.

He M, Person TN, Hebbring SJ, Heinzen E, Ye Z, Schrodi SJ, McPherson EW, Lin SM, Peissig PL, Brilliant MH, O'Rawe J, Robison RJ, Lyon GJ, Wang K.

J Med Genet. 2015 Apr;52(4):282-8. doi: 10.1136/jmedgenet-2014-102907. Epub 2015 Jan 13.

8.

Accounting for uncertainty in DNA sequencing data.

O'Rawe JA, Ferson S, Lyon GJ.

Trends Genet. 2015 Feb;31(2):61-6. doi: 10.1016/j.tig.2014.12.002. Epub 2015 Jan 8. Review.

PMID:
25579994
9.

Reducing INDEL calling errors in whole genome and exome sequencing data.

Fang H, Wu Y, Narzisi G, O'Rawe JA, Barrón LT, Rosenbaum J, Ronemus M, Iossifov I, Schatz MC, Lyon GJ.

Genome Med. 2014 Oct 28;6(10):89. doi: 10.1186/s13073-014-0089-z. eCollection 2014.

10.

Accurate de novo and transmitted indel detection in exome-capture data using microassembly.

Narzisi G, O'Rawe JA, Iossifov I, Fang H, Lee YH, Wang Z, Wu Y, Lyon GJ, Wigler M, Schatz MC.

Nat Methods. 2014 Oct;11(10):1033-6. doi: 10.1038/nmeth.3069. Epub 2014 Aug 17.

11.

Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.

O'Rawe JA, Fang H, Rynearson S, Robison R, Kiruluta ES, Higgins G, Eilbeck K, Reese MG, Lyon GJ.

PeerJ. 2013 Oct 3;1:e177. doi: 10.7717/peerj.177. eCollection 2013.

12.

Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ.

Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013.

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