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Items: 24

1.

Direct Chemical Biotinylation of RNA 5'-Ends Using a Diazo Reagent.

Rice GM, Nutiu R, Gampe CM.

Methods Mol Biol. 2019;1870:81-87. doi: 10.1007/978-1-4939-8808-2_6.

PMID:
30539548
2.

Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions.

Tuck AC, Natarajan KN, Rice GM, Borawski J, Mohn F, Rankova A, Flemr M, Wenger A, Nutiu R, Teichmann S, B├╝hler M.

Life Sci Alliance. 2018 Jul 31;1(4):e201800124. doi: 10.26508/lsa.201800124. eCollection 2018 Aug.

3.

Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing.

Mustoe AM, Busan S, Rice GM, Hajdin CE, Peterson BK, Ruda VM, Kubica N, Nutiu R, Baryza JL, Weeks KM.

Cell. 2018 Mar 22;173(1):181-195.e18. doi: 10.1016/j.cell.2018.02.034. Epub 2018 Mar 15.

4.

Identifying initiation and elongation inhibitors of dengue virus RNA polymerase in a high-throughput lead-finding campaign.

Smith TM, Lim SP, Yue K, Busby SA, Arora R, Seh CC, Wright SK, Nutiu R, Niyomrattanakit P, Wan KF, Beer D, Shi PY, Benson TE.

J Biomol Screen. 2015 Jan;20(1):153-63. doi: 10.1177/1087057114551141. Epub 2014 Sep 24.

PMID:
25252731
5.

Identifying mRNA sequence elements for target recognition by human Argonaute proteins.

Li J, Kim T, Nutiu R, Ray D, Hughes TR, Zhang Z.

Genome Res. 2014 May;24(5):775-85. doi: 10.1101/gr.162230.113. Epub 2014 Mar 24.

6.

SnapShot: High-throughput sequencing applications.

Han H, Nutiu R, Moffat J, Blencowe BJ.

Cell. 2011 Sep 16;146(6):1044, 1044.e1-2. doi: 10.1016/j.cell.2011.09.002. No abstract available.

7.

Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument.

Nutiu R, Friedman RC, Luo S, Khrebtukova I, Silva D, Li R, Zhang L, Schroth GP, Burge CB.

Nat Biotechnol. 2011 Jun 26;29(7):659-64. doi: 10.1038/nbt.1882.

8.

Splice site strength-dependent activity and genetic buffering by poly-G runs.

Xiao X, Wang Z, Jang M, Nutiu R, Wang ET, Burge CB.

Nat Struct Mol Biol. 2009 Oct;16(10):1094-100. doi: 10.1038/nsmb.1661. Epub 2009 Sep 13.

9.

Kinetics of signaling-DNA-aptamer-ATP binding.

Nakamura I, Shi AC, Nutiu R, Yu JM, Li Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Mar;79(3 Pt 1):031906. Epub 2009 Mar 16.

PMID:
19391970
11.

Adsorption and covalent coupling of ATP-binding DNA aptamers onto cellulose.

Su S, Nutiu R, Filipe CD, Li Y, Pelton R.

Langmuir. 2007 Jan 30;23(3):1300-2.

PMID:
17241049
12.

Small-molecule screening made simple for a difficult target with a signaling nucleic acid aptamer that reports on deaminase activity.

Elowe NH, Nutiu R, Allali-Hassani A, Cechetto JD, Hughes DW, Li Y, Brown ED.

Angew Chem Int Ed Engl. 2006 Aug 25;45(34):5648-52. No abstract available.

PMID:
16856187
13.

Solid-phase enzyme activity assay utilizing an entrapped fluorescence-signaling DNA aptamer.

Rupcich N, Nutiu R, Li Y, Brennan JD.

Angew Chem Int Ed Engl. 2006 May 12;45(20):3295-9. No abstract available.

PMID:
16619330
14.
15.

Aptamers with fluorescence-signaling properties.

Nutiu R, Li Y.

Methods. 2005 Sep;37(1):16-25. Epub 2005 Sep 29. Review.

PMID:
16199173
16.

A DNA-protein nanoengine for "on-demand" release and precise delivery of molecules.

Nutiu R, Li Y.

Angew Chem Int Ed Engl. 2005 Aug 26;44(34):5464-7. No abstract available.

PMID:
16041813
17.

Entrapment of fluorescent signaling DNA aptamers in sol-gel-derived silica.

Rupcich N, Nutiu R, Li Y, Brennan JD.

Anal Chem. 2005 Jul 15;77(14):4300-7.

PMID:
16013839
18.

Tau protein binds single-stranded DNA sequence specifically--the proof obtained in vitro with non-equilibrium capillary electrophoresis of equilibrium mixtures.

Krylova SM, Musheev M, Nutiu R, Li Y, Lee G, Krylov SN.

FEBS Lett. 2005 Feb 28;579(6):1371-5. Epub 2005 Jan 28.

19.

In vitro selection of structure-switching signaling aptamers.

Nutiu R, Li Y.

Angew Chem Int Ed Engl. 2005 Feb 4;44(7):1061-5. No abstract available.

PMID:
15643624
20.

Signaling aptamers for monitoring enzymatic activity and for inhibitor screening.

Nutiu R, Yu JM, Li Y.

Chembiochem. 2004 Aug 6;5(8):1139-44. No abstract available.

PMID:
15300841
21.
22.

Structure-switching signaling aptamers.

Nutiu R, Li Y.

J Am Chem Soc. 2003 Apr 23;125(16):4771-8.

PMID:
12696895
23.

Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures.

Berezovski M, Nutiu R, Li Y, Krylov SN.

Anal Chem. 2003 Mar 15;75(6):1382-6.

PMID:
12659199
24.

Tripartite molecular beacons.

Nutiu R, Li Y.

Nucleic Acids Res. 2002 Sep 15;30(18):e94.

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