Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 39

1.

Interaction and regulation between lipid mediator phosphatidic acid and circadian clock regulators in Arabidopsis.

Kim SC, Nusinow DA, Sorkin ML, Pruneda-Paz J, Wang X.

Plant Cell. 2019 Jan 23. pii: tpc.00675.2018. doi: 10.1105/tpc.18.00675. [Epub ahead of print]

PMID:
30674693
2.

Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows.

Erickson BK, Mintseris J, Schweppe DK, Navarrete-Perea J, Erickson AR, Nusinow DP, Paulo JA, Gygi SP.

J Proteome Res. 2019 Mar 1;18(3):1299-1306. doi: 10.1021/acs.jproteome.8b00899. Epub 2019 Feb 4.

PMID:
30658528
3.

Reply to 'Selective effects of heterozygous protein-truncating variants'.

Cassa CA, Weghorn D, Balick DJ, Jordan DM, Nusinow D, Samocha KE, O'Donnell-Luria A, MacArthur DG, Daly MJ, Beier DR, Sunyaev SR.

Nat Genet. 2019 Jan;51(1):3-4. doi: 10.1038/s41588-018-0301-y. No abstract available.

PMID:
30478437
4.

Molecular basis of flowering under natural long-day conditions in Arabidopsis.

Song YH, Kubota A, Kwon MS, Covington MF, Lee N, Taagen ER, Laboy Cintrón D, Hwang DY, Akiyama R, Hodge SK, Huang H, Nguyen NH, Nusinow DA, Millar AJ, Shimizu KK, Imaizumi T.

Nat Plants. 2018 Oct;4(10):824-835. doi: 10.1038/s41477-018-0253-3. Epub 2018 Sep 24.

PMID:
30250277
5.

Raspberry Pi-powered imaging for plant phenotyping.

Tovar JC, Hoyer JS, Lin A, Tielking A, Callen ST, Elizabeth Castillo S, Miller M, Tessman M, Fahlgren N, Carrington JC, Nusinow DA, Gehan MA.

Appl Plant Sci. 2018 Mar 31;6(3):e1031. doi: 10.1002/aps3.1031. eCollection 2018 Mar.

6.

Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots.

Khan MA, Castro-Guerrero NA, McInturf SA, Nguyen NT, Dame AN, Wang J, Bindbeutel RK, Joshi T, Jurisson SS, Nusinow DA, Mendoza-Cozatl DG.

Plant Cell Environ. 2018 Oct;41(10):2263-2276. doi: 10.1111/pce.13192. Epub 2018 Jun 19.

PMID:
29520929
7.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

8.

Efficient CRISPR/Cas9 Genome Editing of Phytoene desaturase in Cassava.

Odipio J, Alicai T, Ingelbrecht I, Nusinow DA, Bart R, Taylor NJ.

Front Plant Sci. 2017 Oct 18;8:1780. doi: 10.3389/fpls.2017.01780. eCollection 2017.

9.

Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.

Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM.

Methods Mol Biol. 2017;1610:231-249. doi: 10.1007/978-1-4939-7003-2_15.

PMID:
28439867
10.

Estimating the selective effects of heterozygous protein-truncating variants from human exome data.

Cassa CA, Weghorn D, Balick DJ, Jordan DM, Nusinow D, Samocha KE, O'Donnell-Luria A, MacArthur DG, Daly MJ, Beier DR, Sunyaev SR.

Nat Genet. 2017 May;49(5):806-810. doi: 10.1038/ng.3831. Epub 2017 Apr 3.

11.

Into the Evening: Complex Interactions in the Arabidopsis Circadian Clock.

Huang H, Nusinow DA.

Trends Genet. 2016 Oct;32(10):674-686. doi: 10.1016/j.tig.2016.08.002. Epub 2016 Sep 1. Review.

PMID:
27594171
12.

Quantitative, Image-Based Phenotyping Methods Provide Insight into Spatial and Temporal Dimensions of Plant Disease.

Mutka AM, Fentress SJ, Sher JW, Berry JC, Pretz C, Nusinow DA, Bart R.

Plant Physiol. 2016 Oct;172(2):650-660. Epub 2016 Jul 21.

13.

Data on the identification of protein interactors with the Evening Complex and PCH1 in Arabidopsis using tandem affinity purification and mass spectrometry (TAP-MS).

Huang H, Alvarez S, Nusinow DA.

Data Brief. 2016 May 14;8:56-60. doi: 10.1016/j.dib.2016.05.014. eCollection 2016 Sep.

14.

PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis.

Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA.

Elife. 2016 Feb 3;5:e13292. doi: 10.7554/eLife.13292.

15.

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci.

Kaiserli E, Páldi K, O'Donnell L, Batalov O, Pedmale UV, Nusinow DA, Kay SA, Chory J.

Dev Cell. 2015 Nov 9;35(3):311-21. doi: 10.1016/j.devcel.2015.10.008.

16.

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry.

Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs SP, Hicks LM, Kay SA, Nusinow DA.

Mol Cell Proteomics. 2016 Jan;15(1):201-17. doi: 10.1074/mcp.M115.054064. Epub 2015 Nov 6.

17.

Erratum: A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides.

Chick JM, Kolippakkam D, Nusinow DP, Zhai B, Rad R, Huttlin EL, Gygi SP.

Nat Biotechnol. 2015 Aug;33(8):882. doi: 10.1038/nbt0815-882d. No abstract available.

PMID:
26252148
18.

Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses.

Waadt R, Manalansan B, Rauniyar N, Munemasa S, Booker MA, Brandt B, Waadt C, Nusinow DA, Kay SA, Kunz HH, Schumacher K, DeLong A, Yates JR 3rd, Schroeder JI.

Plant Physiol. 2015 Sep;169(1):760-79. doi: 10.1104/pp.15.00575. Epub 2015 Jul 14.

19.

A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides.

Chick JM, Kolippakkam D, Nusinow DP, Zhai B, Rad R, Huttlin EL, Gygi SP.

Nat Biotechnol. 2015 Jul;33(7):743-9. doi: 10.1038/nbt.3267. Epub 2015 Jun 15. Erratum in: Nat Biotechnol. 2015 Aug;33(8):882. Erratum in: Nat Biotechnol. 2015 Aug;33(8):882.

20.

MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes.

McAlister GC, Nusinow DP, Jedrychowski MP, Wühr M, Huttlin EL, Erickson BK, Rad R, Haas W, Gygi SP.

Anal Chem. 2014 Jul 15;86(14):7150-8. doi: 10.1021/ac502040v. Epub 2014 Jul 3.

21.

Quantitative temporal viromics: an approach to investigate host-pathogen interaction.

Weekes MP, Tomasec P, Huttlin EL, Fielding CA, Nusinow D, Stanton RJ, Wang EC, Aicheler R, Murrell I, Wilkinson GW, Lehner PJ, Gygi SP.

Cell. 2014 Jun 5;157(6):1460-72. doi: 10.1016/j.cell.2014.04.028.

22.

Essential roles for stat92E in expanding and patterning the proximodistal axis of the Drosophila wing imaginal disc.

Hatini V, Kula-Eversole E, Nusinow D, Del Signore SJ.

Dev Biol. 2013 Jun 1;378(1):38-50. doi: 10.1016/j.ydbio.2013.02.016. Epub 2013 Mar 7.

23.

Network-based inference from complex proteomic mixtures using SNIPE.

Nusinow DP, Kiezun A, O'Connell DJ, Chick JM, Yue Y, Maas RL, Gygi SP, Sunyaev SR.

Bioinformatics. 2012 Dec 1;28(23):3115-22. doi: 10.1093/bioinformatics/bts594. Epub 2012 Oct 11.

24.

ELF3 recruitment to the PRR9 promoter requires other Evening Complex members in the Arabidopsis circadian clock.

Chow BY, Helfer A, Nusinow DA, Kay SA.

Plant Signal Behav. 2012 Feb;7(2):170-3. doi: 10.4161/psb.18766. Epub 2012 Feb 1.

25.

The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth.

Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA.

Nature. 2011 Jul 13;475(7356):398-402. doi: 10.1038/nature10182.

26.

LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock.

Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA.

Curr Biol. 2011 Jan 25;21(2):126-33. doi: 10.1016/j.cub.2010.12.021. Epub 2011 Jan 13.

27.

Networked-based characterization of extracellular matrix proteins from adult mouse pulmonary and aortic valves.

Angel PM, Nusinow D, Brown CB, Violette K, Barnett JV, Zhang B, Baldwin HS, Caprioli RM.

J Proteome Res. 2011 Feb 4;10(2):812-23. doi: 10.1021/pr1009806. Epub 2010 Dec 22.

28.

Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis.

Zhang EE, Liu Y, Dentin R, Pongsawakul PY, Liu AC, Hirota T, Nusinow DA, Sun X, Landais S, Kodama Y, Brenner DA, Montminy M, Kay SA.

Nat Med. 2010 Oct;16(10):1152-6. doi: 10.1038/nm.2214. Epub 2010 Sep 19.

29.

MacroH2A allows ATP-dependent chromatin remodeling by SWI/SNF and ACF complexes but specifically reduces recruitment of SWI/SNF.

Chang EY, Ferreira H, Somers J, Nusinow DA, Owen-Hughes T, Narlikar GJ.

Biochemistry. 2008 Dec 23;47(51):13726-32. doi: 10.1021/bi8016944.

30.

Reciprocal roles for bowl and lines in specifying the peripodial epithelium and the disc proper of the Drosophila wing primordium.

Nusinow D, Greenberg L, Hatini V.

Development. 2008 Sep;135(18):3031-41. doi: 10.1242/dev.020800. Epub 2008 Aug 13.

31.

FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis.

Sawa M, Nusinow DA, Kay SA, Imaizumi T.

Science. 2007 Oct 12;318(5848):261-5. Epub 2007 Sep 13.

32.

The histone domain of macroH2A1 contains several dispersed elements that are each sufficient to direct enrichment on the inactive X chromosome.

Nusinow DA, Sharp JA, Morris A, Salas S, Plath K, Panning B.

J Mol Biol. 2007 Aug 3;371(1):11-8. Epub 2007 May 26.

33.

Poly(ADP-ribose) polymerase 1 is inhibited by a histone H2A variant, MacroH2A, and contributes to silencing of the inactive X chromosome.

Nusinow DA, Hernández-Muñoz I, Fazzio TG, Shah GM, Kraus WL, Panning B.

J Biol Chem. 2007 Apr 27;282(17):12851-9. Epub 2007 Feb 23.

34.

Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry.

Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL.

Mol Cell Proteomics. 2006 Jan;5(1):194-203. Epub 2005 Oct 5.

35.

Developmental regulation of Suz 12 localization.

de la Cruz CC, Fang J, Plath K, Worringer KA, Nusinow DA, Zhang Y, Panning B.

Chromosoma. 2005 Aug;114(3):183-92. Epub 2005 Jun 29.

PMID:
15986205
36.

Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase.

Hernández-Muñoz I, Lund AH, van der Stoop P, Boutsma E, Muijrers I, Verhoeven E, Nusinow DA, Panning B, Marahrens Y, van Lohuizen M.

Proc Natl Acad Sci U S A. 2005 May 24;102(21):7635-40. Epub 2005 May 16.

37.

Recognition and modification of seX chromosomes.

Nusinow DA, Panning B.

Curr Opin Genet Dev. 2005 Apr;15(2):206-13. Review.

PMID:
15797204
38.

Xist RNA and the mechanism of X chromosome inactivation.

Plath K, Mlynarczyk-Evans S, Nusinow DA, Panning B.

Annu Rev Genet. 2002;36:233-78. Epub 2002 Jun 11. Review.

PMID:
12429693
39.

In vitro transcription and start site selection in Schizosaccharomyces pombe.

Choi WS, Yan M, Nusinow D, Gralla JD.

J Mol Biol. 2002 Jun 21;319(5):1005-13.

PMID:
12079343

Supplemental Content

Loading ...
Support Center