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Items: 40

1.

ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF.

McCarthy AA, Barrett R, Beteva A, Caserotto H, Dobias F, Felisaz F, Giraud T, Guijarro M, Janocha R, Khadrouche A, Lentini M, Leonard GA, Lopez Marrero M, Malbet-Monaco S, McSweeney S, Nurizzo D, Papp G, Rossi C, Sinoir J, Sorez C, Surr J, Svensson O, Zander U, Cipriani F, Theveneau P, Mueller-Dieckmann C.

J Synchrotron Radiat. 2018 Jul 1;25(Pt 4):1249-1260. doi: 10.1107/S1600577518007166. Epub 2018 Jun 27.

2.

Multi-position data collection and dynamic beam sizing: recent improvements to the automatic data-collection algorithms on MASSIF-1.

Svensson O, Gilski M, Nurizzo D, Bowler MW.

Acta Crystallogr D Struct Biol. 2018 May 1;74(Pt 5):433-440. doi: 10.1107/S2059798318003728. Epub 2018 Apr 24.

3.

Structural Evidence for a Role of the Multi-functional Human Glycoprotein Afamin in Wnt Transport.

Naschberger A, Orry A, Lechner S, Bowler MW, Nurizzo D, Novokmet M, Keller MA, Oemer G, Seppi D, Haslbeck M, Pansi K, Dieplinger H, Rupp B.

Structure. 2017 Dec 5;25(12):1907-1915.e5. doi: 10.1016/j.str.2017.10.006. Epub 2017 Nov 16.

PMID:
29153507
4.

An algal photoenzyme converts fatty acids to hydrocarbons.

Sorigué D, Légeret B, Cuiné S, Blangy S, Moulin S, Billon E, Richaud P, Brugière S, Couté Y, Nurizzo D, Müller P, Brettel K, Pignol D, Arnoux P, Li-Beisson Y, Peltier G, Beisson F.

Science. 2017 Sep 1;357(6354):903-907. doi: 10.1126/science.aan6349.

PMID:
28860382
5.

Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2.

Ali-Ahmad A, Garron ML, Zamboni V, Lenfant N, Nurizzo D, Henrissat B, Berrin JG, Bourne Y, Vincent F.

J Struct Biol. 2017 Mar;197(3):227-235. doi: 10.1016/j.jsb.2016.11.004. Epub 2016 Nov 24.

PMID:
27890857
6.

RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments.

Nurizzo D, Bowler MW, Caserotto H, Dobias F, Giraud T, Surr J, Guichard N, Papp G, Guijarro M, Mueller-Dieckmann C, Flot D, McSweeney S, Cipriani F, Theveneau P, Leonard GA.

Acta Crystallogr D Struct Biol. 2016 Aug;72(Pt 8):966-75. doi: 10.1107/S205979831601158X. Epub 2016 Jul 27.

7.

MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules.

Bowler MW, Nurizzo D, Barrett R, Beteva A, Bodin M, Caserotto H, Delagenière S, Dobias F, Flot D, Giraud T, Guichard N, Guijarro M, Lentini M, Leonard GA, McSweeney S, Oskarsson M, Schmidt W, Snigirev A, von Stetten D, Surr J, Svensson O, Theveneau P, Mueller-Dieckmann C.

J Synchrotron Radiat. 2015 Nov;22(6):1540-7. doi: 10.1107/S1600577515016604. Epub 2015 Oct 3.

8.

Fully automatic characterization and data collection from crystals of biological macromolecules.

Svensson O, Malbet-Monaco S, Popov A, Nurizzo D, Bowler MW.

Acta Crystallogr D Biol Crystallogr. 2015 Aug;71(Pt 8):1757-67. doi: 10.1107/S1399004715011918. Epub 2015 Jul 31.

9.

Structural and biochemical characterization of the β-N-acetylglucosaminidase from Thermotoga maritima: toward rationalization of mechanistic knowledge in the GH73 family.

Lipski A, Hervé M, Lombard V, Nurizzo D, Mengin-Lecreulx D, Bourne Y, Vincent F.

Glycobiology. 2015 Mar;25(3):319-30. doi: 10.1093/glycob/cwu113. Epub 2014 Oct 24.

PMID:
25344445
10.

Recent progress in robot-based systems for crystallography and their contribution to drug discovery.

Ferrer JL, Larive NA, Bowler MW, Nurizzo D.

Expert Opin Drug Discov. 2013 Jul;8(7):835-47. doi: 10.1517/17460441.2013.793666. Epub 2013 May 8. Review.

PMID:
23656378
11.

MxCuBE: a synchrotron beamline control environment customized for macromolecular crystallography experiments.

Gabadinho J, Beteva A, Guijarro M, Rey-Bakaikoa V, Spruce D, Bowler MW, Brockhauser S, Flot D, Gordon EJ, Hall DR, Lavault B, McCarthy AA, McCarthy J, Mitchell E, Monaco S, Mueller-Dieckmann C, Nurizzo D, Ravelli RB, Thibault X, Walsh MA, Leonard GA, McSweeney SM.

J Synchrotron Radiat. 2010 Sep;17(5):700-7. doi: 10.1107/S0909049510020005. Epub 2010 Jul 13.

12.

Circular permutation provides an evolutionary link between two families of calcium-dependent carbohydrate binding modules.

Montanier C, Flint JE, Bolam DN, Xie H, Liu Z, Rogowski A, Weiner DP, Ratnaparkhe S, Nurizzo D, Roberts SM, Turkenburg JP, Davies GJ, Gilbert HJ.

J Biol Chem. 2010 Oct 8;285(41):31742-54. doi: 10.1074/jbc.M110.142133. Epub 2010 Jul 21.

13.

The ID23-2 structural biology microfocus beamline at the ESRF.

Flot D, Mairs T, Giraud T, Guijarro M, Lesourd M, Rey V, van Brussel D, Morawe C, Borel C, Hignette O, Chavanne J, Nurizzo D, McSweeney S, Mitchell E.

J Synchrotron Radiat. 2010 Jan;17(1):107-18. doi: 10.1107/S0909049509041168. Epub 2009 Dec 5.

14.

A decade of user operation on the macromolecular crystallography MAD beamline ID14-4 at the ESRF.

McCarthy AA, Brockhauser S, Nurizzo D, Theveneau P, Mairs T, Spruce D, Guijarro M, Lesourd M, Ravelli RB, McSweeney S.

J Synchrotron Radiat. 2009 Nov;16(Pt 6):803-12. doi: 10.1107/S0909049509035377. Epub 2009 Oct 7.

15.

Structures of two mutants that probe the role in iron release of the dilysine pair in the N-lobe of human transferrin.

Baker HM, Nurizzo D, Mason AB, Baker EN.

Acta Crystallogr D Biol Crystallogr. 2007 Mar;63(Pt 3):408-14. Epub 2007 Feb 21.

PMID:
17327678
16.

High-throughput sample handling and data collection at synchrotrons: embedding the ESRF into the high-throughput gene-to-structure pipeline.

Beteva A, Cipriani F, Cusack S, Delageniere S, Gabadinho J, Gordon EJ, Guijarro M, Hall DR, Larsen S, Launer L, Lavault CB, Leonard GA, Mairs T, McCarthy A, McCarthy J, Meyer J, Mitchell E, Monaco S, Nurizzo D, Pernot P, Pieritz R, Ravelli RG, Rey V, Shepard W, Spruce D, Stuart DI, Svensson O, Theveneau P, Thibault X, Turkenburg J, Walsh M, McSweeney SM.

Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1162-9. Epub 2006 Sep 19. Review.

PMID:
17001093
17.

Crystal structure and mechanistic determinants of SARS coronavirus nonstructural protein 15 define an endoribonuclease family.

Ricagno S, Egloff MP, Ulferts R, Coutard B, Nurizzo D, Campanacci V, Cambillau C, Ziebuhr J, Canard B.

Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):11892-7. Epub 2006 Aug 1.

18.

The ID23-1 structural biology beamline at the ESRF.

Nurizzo D, Mairs T, Guijarro M, Rey V, Meyer J, Fajardo P, Chavanne J, Biasci JC, McSweeney S, Mitchell E.

J Synchrotron Radiat. 2006 May;13(Pt 3):227-38. Epub 2006 Apr 13.

PMID:
16645249
19.

UV laser-excited fluorescence as a tool for the visualization of protein crystals mounted in loops.

Vernede X, Lavault B, Ohana J, Nurizzo D, Joly J, Jacquamet L, Felisaz F, Cipriani F, Bourgeois D.

Acta Crystallogr D Biol Crystallogr. 2006 Mar;62(Pt 3):253-61. Epub 2006 Feb 22.

PMID:
16510972
20.

The care and nurture of undulator data sets.

Flot D, Gordon EJ, Hall DR, Leonard GA, McCarthy A, McCarthy J, McSweeney S, Mitchell E, Nurizzo D, Ravelli RG, Shepard W.

Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):65-71. Epub 2005 Dec 14. Review.

PMID:
16369095
21.

Automation of macromolecular crystallography beamlines.

Arzt S, Beteva A, Cipriani F, Delageniere S, Felisaz F, Förstner G, Gordon E, Launer L, Lavault B, Leonard G, Mairs T, McCarthy A, McCarthy J, McSweeney S, Meyer J, Mitchell E, Monaco S, Nurizzo D, Ravelli R, Rey V, Shepard W, Spruce D, Svensson O, Theveneau P.

Prog Biophys Mol Biol. 2005 Oct;89(2):124-52. Review.

PMID:
15910915
22.

Probing the mechanism of ligand recognition in family 29 carbohydrate-binding modules.

Flint J, Bolam DN, Nurizzo D, Taylor EJ, Williamson MP, Walters C, Davies GJ, Gilbert HJ.

J Biol Chem. 2005 Jun 24;280(25):23718-26. Epub 2005 Mar 22.

23.

Tailored catalysts for plant cell-wall degradation: redesigning the exo/endo preference of Cellvibrio japonicus arabinanase 43A.

Proctor MR, Taylor EJ, Nurizzo D, Turkenburg JP, Lloyd RM, Vardakou M, Davies GJ, Gilbert HJ.

Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2697-702. Epub 2005 Feb 11.

24.

X-ray crystal structure of a non-crystalline cellulose-specific carbohydrate-binding module: CBM28.

Jamal S, Nurizzo D, Boraston AB, Davies GJ.

J Mol Biol. 2004 May 28;339(2):253-8.

PMID:
15136030
25.

The crystal structure of the Escherichia coli lipocalin Blc suggests a possible role in phospholipid binding.

Campanacci V, Nurizzo D, Spinelli S, Valencia C, Tegoni M, Cambillau C.

FEBS Lett. 2004 Mar 26;562(1-3):183-8.

26.

Ligand-mediated dimerization of a carbohydrate-binding molecule reveals a novel mechanism for protein-carbohydrate recognition.

Flint J, Nurizzo D, Harding SE, Longman E, Davies GJ, Gilbert HJ, Bolam DN.

J Mol Biol. 2004 Mar 19;337(2):417-26.

PMID:
15003456
27.

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate binding module, TmCBM27.

Boraston AB, Revett TJ, Boraston CM, Nurizzo D, Davies GJ.

Structure. 2003 Jun;11(6):665-75.

28.

The alpha-glucuronidase, GlcA67A, of Cellvibrio japonicus utilizes the carboxylate and methyl groups of aldobiouronic acid as important substrate recognition determinants.

Nagy T, Nurizzo D, Davies GJ, Biely P, Lakey JH, Bolam DN, Gilbert HJ.

J Biol Chem. 2003 May 30;278(22):20286-92. Epub 2003 Mar 24.

29.

The crystal structure of aminoglycoside-3'-phosphotransferase-IIa, an enzyme responsible for antibiotic resistance.

Nurizzo D, Shewry SC, Perlin MH, Brown SA, Dholakia JN, Fuchs RL, Deva T, Baker EN, Smith CA.

J Mol Biol. 2003 Mar 21;327(2):491-506.

PMID:
12628253
30.

Promiscuity in ligand-binding: The three-dimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello- and mannohexaose.

Charnock SJ, Bolam DN, Nurizzo D, Szabó L, McKie VA, Gilbert HJ, Davies GJ.

Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14077-82. Epub 2002 Oct 21.

31.

Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold.

Nurizzo D, Turkenburg JP, Charnock SJ, Roberts SM, Dodson EJ, McKie VA, Taylor EJ, Gilbert HJ, Davies GJ.

Nat Struct Biol. 2002 Sep;9(9):665-8.

PMID:
12198486
32.

Differential oligosaccharide recognition by evolutionarily-related beta-1,4 and beta-1,3 glucan-binding modules.

Boraston AB, Nurizzo D, Notenboom V, Ducros V, Rose DR, Kilburn DG, Davies GJ.

J Mol Biol. 2002 Jun 21;319(5):1143-56.

PMID:
12079353
33.
34.

Cyanide binding to cd(1) nitrite reductase from Pseudomonas aeruginosa: role of the active-site His369 in ligand stabilization.

Sun W, Arese M, Brunori M, Nurizzo D, Brown K, Cambillau C, Tegoni M, Cutruzzolà F.

Biochem Biophys Res Commun. 2002 Feb 15;291(1):1-7.

PMID:
11829453
35.
36.

Crystal structures and iron release properties of mutants (K206A and K296A) that abolish the dilysine interaction in the N-lobe of human transferrin.

Nurizzo D, Baker HM, He QY, MacGillivray RT, Mason AB, Woodworth RC, Baker EN.

Biochemistry. 2001 Feb 13;40(6):1616-23.

PMID:
11327820
37.

MAD structure of Pseudomonas nautica dimeric cytochrome c552 mimicks the c4 Dihemic cytochrome domain association.

Brown K, Nurizzo D, Besson S, Shepard W, Moura J, Moura I, Tegoni M, Cambillau C.

J Mol Biol. 1999 Jun 18;289(4):1017-28.

PMID:
10369779
38.

Does the reduction of c heme trigger the conformational change of crystalline nitrite reductase?

Nurizzo D, Cutruzzolà F, Arese M, Bourgeois D, Brunori M, Cambillau C, Tegoni M.

J Biol Chem. 1999 May 21;274(21):14997-5004.

39.

Conformational changes occurring upon reduction and NO binding in nitrite reductase from Pseudomonas aeruginosa.

Nurizzo D, Cutruzzolà F, Arese M, Bourgeois D, Brunori M, Cambillau C, Tegoni M.

Biochemistry. 1998 Oct 6;37(40):13987-96.

PMID:
9760233
40.

N-terminal arm exchange is observed in the 2.15 A crystal structure of oxidized nitrite reductase from Pseudomonas aeruginosa.

Nurizzo D, Silvestrini MC, Mathieu M, Cutruzzolà F, Bourgeois D, Fülöp V, Hajdu J, Brunori M, Tegoni M, Cambillau C.

Structure. 1997 Sep 15;5(9):1157-71.

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