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Items: 1 to 50 of 99

1.

Bottleneck Size-Dependent Changes in the Genetic Diversity and Specific Growth Rate of a Rotavirus A Strain.

Kadoya SS, Urayama SI, Nunoura T, Hirai M, Takaki Y, Kitajima M, Nakagomi T, Nakagomi O, Okabe S, Nishimura O, Sano D.

J Virol. 2020 Mar 4. pii: JVI.02083-19. doi: 10.1128/JVI.02083-19. [Epub ahead of print]

2.

dsRNA-seq Reveals Novel RNA Virus and Virus-Like Putative Complete Genome Sequences from Hymeniacidon sp. Sponge.

Urayama SI, Takaki Y, Hagiwara D, Nunoura T.

Microbes Environ. 2020;35(2). doi: 10.1264/jsme2.ME19132.

3.

Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria.

Saw JHW, Nunoura T, Hirai M, Takaki Y, Parsons R, Michelsen M, Longnecker K, Kujawinski EB, Stepanauskas R, Landry Z, Carlson CA, Giovannoni SJ.

mBio. 2020 Jan 7;11(1). pii: e02975-19. doi: 10.1128/mBio.02975-19.

4.

A new polycipivirus identified in Colobopsis shohki.

Fukasawa F, Hirai M, Takaki Y, Shimane Y, Thomas CE, Urayama SI, Nunoura T, Koyama S.

Arch Virol. 2020 Mar;165(3):761-763. doi: 10.1007/s00705-019-04510-8. Epub 2019 Dec 21.

PMID:
31865471
5.

Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments.

Hiraoka S, Hirai M, Matsui Y, Makabe A, Minegishi H, Tsuda M, Juliarni, Rastelli E, Danovaro R, Corinaldesi C, Kitahashi T, Tasumi E, Nishizawa M, Takai K, Nomaki H, Nunoura T.

ISME J. 2020 Mar;14(3):740-756. doi: 10.1038/s41396-019-0564-z. Epub 2019 Dec 11.

6.

Drivers of Bacterial α- and β-Diversity Patterns and Functioning in Subsurface Hadal Sediments.

Rastelli E, Corinaldesi C, Dell'Anno A, Tangherlini M, Lo Martire M, Nishizawa M, Nomaki H, Nunoura T, Danovaro R.

Front Microbiol. 2019 Nov 14;10:2609. doi: 10.3389/fmicb.2019.02609. eCollection 2019.

7.

Viral Infections Boost Prokaryotic Biomass Production and Organic C Cycling in Hadal Trench Sediments.

Manea E, Dell'Anno A, Rastelli E, Tangherlini M, Nunoura T, Nomaki H, Danovaro R, Corinaldesi C.

Front Microbiol. 2019 Aug 23;10:1952. doi: 10.3389/fmicb.2019.01952. eCollection 2019.

8.

Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics.

De Corte D, Martínez JM, Cretoiu MS, Takaki Y, Nunoura T, Sintes E, Herndl GJ, Yokokawa T.

Front Microbiol. 2019 Aug 21;10:1801. doi: 10.3389/fmicb.2019.01801. eCollection 2019.

9.

Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean.

Wang Y, Huang JM, Cui GJ, Nunoura T, Takaki Y, Li WL, Li J, Gao ZM, Takai K, Zhang AQ, Stepanauskas R.

Environ Microbiol. 2019 Feb;21(2):716-729. doi: 10.1111/1462-2920.14518. Epub 2019 Jan 31.

PMID:
30592124
10.

Degradation behavior of palm oil mill effluent in Fenton oxidation.

Gamaralalage D, Sawai O, Nunoura T.

J Hazard Mater. 2019 Feb 15;364:791-799. doi: 10.1016/j.jhazmat.2018.07.023. Epub 2018 Jul 6.

PMID:
30447563
11.

Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus.

Urayama SI, Takaki Y, Nunoura T, Miyamoto N.

Microbes Environ. 2018 Dec 28;33(4):446-449. doi: 10.1264/jsme2.ME18089. Epub 2018 Oct 13.

12.

Unveiling the RNA virosphere associated with marine microorganisms.

Urayama SI, Takaki Y, Nishi S, Yoshida-Takashima Y, Deguchi S, Takai K, Nunoura T.

Mol Ecol Resour. 2018 Nov;18(6):1444-1455. doi: 10.1111/1755-0998.12936. Epub 2018 Sep 6.

PMID:
30256532
13.

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

Nunoura T, Nishizawa M, Hirai M, Shimamura S, Harnvoravongchai P, Koide O, Morono Y, Fukui T, Inagaki F, Miyazaki J, Takaki Y, Takai K.

Microbes Environ. 2018 Jul 4;33(2):186-194. doi: 10.1264/jsme2.ME17194. Epub 2018 May 25.

14.

Draft Genome Sequence of Mariprofundus micogutta Strain ET2.

Makita H, Nishi S, Takaki Y, Tanaka E, Nunoura T, Mitsunobu S, Takai K.

Genome Announc. 2018 May 17;6(20). pii: e00342-18. doi: 10.1128/genomeA.00342-18.

15.

d-Lactate electrochemical biosensor prepared by immobilization of thermostable dye-linked d-lactate dehydrogenase from Candidatus Caldiarchaeum subterraneum.

Satomura T, Hayashi J, Sakamoto H, Nunoura T, Takaki Y, Takai K, Takami H, Ohshima T, Sakuraba H, Suye SI.

J Biosci Bioeng. 2018 Oct;126(4):425-430. doi: 10.1016/j.jbiosc.2018.04.002. Epub 2018 Apr 22.

PMID:
29691195
16.

Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan.

Yoshida M, Mochizuki T, Urayama SI, Yoshida-Takashima Y, Nishi S, Hirai M, Nomaki H, Takaki Y, Nunoura T, Takai K.

Front Microbiol. 2018 Feb 6;9:75. doi: 10.3389/fmicb.2018.00075. eCollection 2018.

17.

A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile.

Nunoura T, Chikaraishi Y, Izaki R, Suwa T, Sato T, Harada T, Mori K, Kato Y, Miyazaki M, Shimamura S, Yanagawa K, Shuto A, Ohkouchi N, Fujita N, Takaki Y, Atomi H, Takai K.

Science. 2018 Feb 2;359(6375):559-563. doi: 10.1126/science.aao3407. Epub 2018 Feb 1.

PMID:
29420286
18.

Genome-enabled metabolic reconstruction of dominant chemosynthetic colonizers in deep-sea massive sulfide deposits.

Kato S, Shibuya T, Takaki Y, Hirai M, Nunoura T, Suzuki K.

Environ Microbiol. 2018 Feb;20(2):862-877. doi: 10.1111/1462-2920.14032. Epub 2018 Jan 10.

PMID:
29322618
19.

Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments.

Hirai M, Nishi S, Tsuda M, Sunamura M, Takaki Y, Nunoura T.

Microbes Environ. 2017 Dec 27;32(4):336-343. doi: 10.1264/jsme2.ME17132. Epub 2017 Nov 28.

20.

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.

Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R.

Science. 2017 Nov 24;358(6366):1046-1051. doi: 10.1126/science.aan8260.

PMID:
29170234
21.

Metagenomic insights into zooplankton-associated bacterial communities.

De Corte D, Srivastava A, Koski M, Garcia JAL, Takaki Y, Yokokawa T, Nunoura T, Elisabeth NH, Sintes E, Herndl GJ.

Environ Microbiol. 2018 Feb;20(2):492-505. doi: 10.1111/1462-2920.13944. Epub 2017 Oct 27.

22.

Lebetimonas natsushimae sp. nov., a novel strictly anaerobic, moderately thermophilic chemoautotroph isolated from a deep-sea hydrothermal vent polychaete nest in the Mid-Okinawa Trough.

Nagata R, Takaki Y, Tame A, Nunoura T, Muto H, Mino S, Sawayama S, Takai K, Nakagawa S.

Syst Appl Microbiol. 2017 Sep;40(6):352-356. doi: 10.1016/j.syapm.2017.06.002. Epub 2017 Jul 4.

PMID:
28690052
23.

Deep-sea vent phage DNA polymerase specifically initiates DNA synthesis in the absence of primers.

Zhu B, Wang L, Mitsunobu H, Lu X, Hernandez AJ, Yoshida-Takashima Y, Nunoura T, Tabor S, Richardson CC.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2310-E2318. doi: 10.1073/pnas.1700280114. Epub 2017 Mar 6.

24.

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, Spang A, Ettema TJ.

Nature. 2017 Jan 19;541(7637):353-358. doi: 10.1038/nature21031. Epub 2017 Jan 11.

25.

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents.

Mino S, Nakagawa S, Makita H, Toki T, Miyazaki J, Sievert SM, Polz MF, Inagaki F, Godfroy A, Kato S, Watanabe H, Nunoura T, Nakamura K, Imachi H, Watsuji TO, Kojima S, Takai K, Sawabe T.

ISME J. 2017 Apr;11(4):909-919. doi: 10.1038/ismej.2016.178. Epub 2017 Jan 3.

26.

Mariprofundus micogutta sp. nov., a novel iron-oxidizing zetaproteobacterium isolated from a deep-sea hydrothermal field at the Bayonnaise knoll of the Izu-Ogasawara arc, and a description of Mariprofundales ord. nov. and Zetaproteobacteria classis nov.

Makita H, Tanaka E, Mitsunobu S, Miyazaki M, Nunoura T, Uematsu K, Takaki Y, Nishi S, Shimamura S, Takai K.

Arch Microbiol. 2017 Mar;199(2):335-346. doi: 10.1007/s00203-016-1307-4. Epub 2016 Oct 20.

PMID:
27766355
27.

Virus-mediated archaeal hecatomb in the deep seafloor.

Danovaro R, Dell'Anno A, Corinaldesi C, Rastelli E, Cavicchioli R, Krupovic M, Noble RT, Nunoura T, Prangishvili D.

Sci Adv. 2016 Oct 12;2(10):e1600492. eCollection 2016 Oct.

28.

Defining boundaries for the distribution of microbial communities beneath the sediment-buried, hydrothermally active seafloor.

Yanagawa K, Ijiri A, Breuker A, Sakai S, Miyoshi Y, Kawagucci S, Noguchi T, Hirai M, Schippers A, Ishibashi JI, Takaki Y, Sunamura M, Urabe T, Nunoura T, Takai K.

ISME J. 2017 Feb;11(2):529-542. doi: 10.1038/ismej.2016.119. Epub 2016 Oct 18.

29.

Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt.

Minegishi H, Shimogaki R, Enomoto S, Echigo A, Kondo Y, Nagaoka S, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Nunoura T, Takai K, Usami R.

Int J Syst Evol Microbiol. 2016 Dec;66(12):4975-4980. doi: 10.1099/ijsem.0.001455. Epub 2016 Aug 25.

PMID:
27562780
30.

Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean.

Nunoura T, Hirai M, Yoshida-Takashima Y, Nishizawa M, Kawagucci S, Yokokawa T, Miyazaki J, Koide O, Makita H, Takaki Y, Sunamura M, Takai K.

Front Microbiol. 2016 Aug 10;7:1261. doi: 10.3389/fmicb.2016.01261. eCollection 2016.

31.

Comparative Analysis of Microbial Communities in Iron-Dominated Flocculent Mats in Deep-Sea Hydrothermal Environments.

Makita H, Kikuchi S, Mitsunobu S, Takaki Y, Yamanaka T, Toki T, Noguchi T, Nakamura K, Abe M, Hirai M, Yamamoto M, Uematsu K, Miyazaki J, Nunoura T, Takahashi Y, Takai K.

Appl Environ Microbiol. 2016 Sep 16;82(19):5741-55. doi: 10.1128/AEM.01151-16. Print 2016 Oct 1.

32.

Enantioselective Utilization of D-Amino Acids by Deep-Sea Microorganisms.

Kubota T, Kobayashi T, Nunoura T, Maruyama F, Deguchi S.

Front Microbiol. 2016 Apr 19;7:511. doi: 10.3389/fmicb.2016.00511. eCollection 2016.

33.

A new member of the family Totiviridae associated with arboreal ants (Camponotus nipponicus).

Koyama S, Sakai C, Thomas CE, Nunoura T, Urayama S.

Arch Virol. 2016 Jul;161(7):2043-5. doi: 10.1007/s00705-016-2876-x. Epub 2016 May 2.

PMID:
27138551
34.

FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance.

Urayama S, Takaki Y, Nunoura T.

Microbes Environ. 2016;31(1):33-40. doi: 10.1264/jsme2.ME15171. Epub 2016 Feb 13.

35.

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

Nunoura T, Takaki Y, Shimamura S, Kakuta J, Kazama H, Hirai M, Masui N, Tomaru H, Morono Y, Imachi H, Inagaki F, Takai K.

Environ Microbiol. 2016 Jun;18(6):1889-906. doi: 10.1111/1462-2920.13096. Epub 2015 Dec 10.

PMID:
26486095
36.

Distribution of eukaryotic serine racemases in the bacterial domain and characterization of a representative protein in Roseobacter litoralis Och 149.

Kubota T, Shimamura S, Kobayashi T, Nunoura T, Deguchi S.

Microbiology. 2016 Jan;162(1):53-61. doi: 10.1099/mic.0.000200. Epub 2015 Oct 16.

PMID:
26475231
37.

Biochemical and genetic characterization of β-1,3 glucanase from a deep subseafloor Laceyella putida.

Kobayashi T, Uchimura K, Kubota T, Nunoura T, Deguchi S.

Appl Microbiol Biotechnol. 2016 Jan;100(1):203-14. doi: 10.1007/s00253-015-6983-5. Epub 2015 Sep 21.

PMID:
26392136
38.

Identification and genomic analysis of temperate Pseudomonas bacteriophage PstS-1 from the Japan trench at a depth of 7000 m.

Yoshida M, Yoshida-Takashima Y, Nunoura T, Takai K.

Res Microbiol. 2015 Nov;166(9):668-76. doi: 10.1016/j.resmic.2015.05.001. Epub 2015 May 27.

PMID:
26025640
39.

A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography.

Urayama S, Yoshida-Takashima Y, Yoshida M, Tomaru Y, Moriyama H, Takai K, Nunoura T.

Microbes Environ. 2015;30(2):199-203. doi: 10.1264/jsme2.ME14174. Epub 2015 May 23.

40.

Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on Earth.

Nunoura T, Takaki Y, Hirai M, Shimamura S, Makabe A, Koide O, Kikuchi T, Miyazaki J, Koba K, Yoshida N, Sunamura M, Takai K.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1230-6. doi: 10.1073/pnas.1421816112. Epub 2015 Feb 23.

41.

Genomic characterization of a temperate phage of the psychrotolerant deep-sea bacterium Aurantimonas sp.

Yoshida M, Yoshida-Takashima Y, Nunoura T, Takai K.

Extremophiles. 2015 Jan;19(1):49-58. doi: 10.1007/s00792-014-0702-5. Epub 2014 Oct 30.

PMID:
25354565
42.

A long-term cultivation of an anaerobic methane-oxidizing microbial community from deep-sea methane-seep sediment using a continuous-flow bioreactor.

Aoki M, Ehara M, Saito Y, Yoshioka H, Miyazaki M, Saito Y, Miyashita A, Kawakami S, Yamaguchi T, Ohashi A, Nunoura T, Takai K, Imachi H.

PLoS One. 2014 Aug 20;9(8):e105356. doi: 10.1371/journal.pone.0105356. eCollection 2014.

43.

Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent.

Nunoura T, Takaki Y, Kazama H, Kakuta J, Shimamura S, Makita H, Hirai M, Miyazaki M, Takai K.

PLoS One. 2014 Aug 18;9(8):e104959. doi: 10.1371/journal.pone.0104959. eCollection 2014.

44.

Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331).

Yanagawa K, Breuker A, Schippers A, Nishizawa M, Ijiri A, Hirai M, Takaki Y, Sunamura M, Urabe T, Nunoura T, Takai K.

Appl Environ Microbiol. 2014 Oct;80(19):6126-35. doi: 10.1128/AEM.01741-14. Epub 2014 Jul 25.

45.

Methylomarinovum caldicuralii gen. nov., sp. nov., a moderately thermophilic methanotroph isolated from a shallow submarine hydrothermal system, and proposal of the family Methylothermaceae fam. nov.

Hirayama H, Abe M, Miyazaki M, Nunoura T, Furushima Y, Yamamoto H, Takai K.

Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):989-99. doi: 10.1099/ijs.0.058172-0. Epub 2013 Dec 18.

PMID:
24425820
46.

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

Yanagawa K, Morono Y, Yoshida-Takashima Y, Eitoku M, Sunamura M, Inagaki F, Imachi H, Takai K, Nunoura T.

FEMS Microbiol Ecol. 2014 Apr;88(1):60-8. doi: 10.1111/1574-6941.12269. Epub 2013 Dec 23.

47.

The first microbiological contamination assessment by deep-sea drilling and coring by the D/V Chikyu at the Iheya North hydrothermal field in the Mid-Okinawa Trough (IODP Expedition 331).

Yanagawa K, Nunoura T, McAllister SM, Hirai M, Breuker A, Brandt L, House CH, Moyer CL, Birrien JL, Aoike K, Sunamura M, Urabe T, Mottl MJ, Takai K.

Front Microbiol. 2013 Nov 8;4:327. doi: 10.3389/fmicb.2013.00327. eCollection 2013.

48.

Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments.

Nunoura T, Nishizawa M, Kikuchi T, Tsubouchi T, Hirai M, Koide O, Miyazaki J, Hirayama H, Koba K, Takai K.

Environ Microbiol. 2013 Nov;15(11):3087-107. doi: 10.1111/1462-2920.12152. Epub 2013 May 29.

PMID:
23718903
50.

Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific.

Mino S, Makita H, Toki T, Miyazaki J, Kato S, Watanabe H, Imachi H, Watsuji TO, Nunoura T, Kojima S, Sawabe T, Takai K, Nakagawa S.

Front Microbiol. 2013 Apr 25;4:107. doi: 10.3389/fmicb.2013.00107. eCollection 2013.

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