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Items: 25

1.

Variability and host density independence in inductions-based estimates of environmental lysogeny.

Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, Peters G, Robinett N, Sandin S, Segall A, Silveira C, Youle M, Rohwer F.

Nat Microbiol. 2017 Apr 28;2:17064. doi: 10.1038/nmicrobiol.2017.64.

PMID:
28452987
2.

Corrigendum: Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Nov 3;539(7627):123. doi: 10.1038/nature19335. Epub 2016 Aug 24. No abstract available.

PMID:
27556939
3.

Viruses as Winners in the Game of Life.

Cobián Güemes AG, Youle M, Cantú VA, Felts B, Nulton J, Rohwer F.

Annu Rev Virol. 2016 Sep 29;3(1):197-214.

PMID:
27741409
4.

Energetic differences between bacterioplankton trophic groups and coral reef resistance.

McDole Somera T, Bailey B, Barott K, Grasis J, Hatay M, Hilton BJ, Hisakawa N, Nosrat B, Nulton J, Silveira CB, Sullivan C, Brainard RE, Rohwer F.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160467. doi: 10.1098/rspb.2016.0467.

5.

Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F.

Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Erratum in: Nature. 2016 Nov 3;539(7627):123.

PMID:
26982729
6.

Stable and sporadic symbiotic communities of coral and algal holobionts.

Hester ER, Barott KL, Nulton J, Vermeij MJ, Rohwer FL.

ISME J. 2016 May;10(5):1157-69. doi: 10.1038/ismej.2015.190. Epub 2015 Nov 10.

7.

Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters.

Barr JJ, Auro R, Sam-Soon N, Kassegne S, Peters G, Bonilla N, Hatay M, Mourtada S, Bailey B, Youle M, Felts B, Baljon A, Nulton J, Salamon P, Rohwer F.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13675-80. doi: 10.1073/pnas.1508355112. Epub 2015 Oct 19.

8.

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins.

Sanchez SE, Cuevas DA, Rostron JE, Liang TY, Pivaroff CG, Haynes MR, Nulton J, Felts B, Bailey BA, Salamon P, Edwards RA, Burgin AB, Segall AM, Rohwer F.

J Vis Exp. 2015 Jun 11;(100):e52854. doi: 10.3791/52854.

9.

Reference-independent comparative metagenomics using cross-assembly: crAss.

Dutilh BE, Schmieder R, Nulton J, Felts B, Salamon P, Edwards RA, Mokili JL.

Bioinformatics. 2012 Dec 15;28(24):3225-31. doi: 10.1093/bioinformatics/bts613. Epub 2012 Oct 16.

10.

Assessing coral reefs on a Pacific-wide scale using the microbialization score.

McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin SA, Vargas-Angel B, Youle M, Zgliczynski BJ, Brainard RE, Rohwer F.

PLoS One. 2012;7(9):e43233. doi: 10.1371/journal.pone.0043233. Epub 2012 Sep 7.

11.

Diversification of the Salmonella fimbriae: a model of macro- and microevolution.

Yue M, Rankin SC, Blanchet RT, Nulton JD, Edwards RA, Schifferli DM.

PLoS One. 2012;7(6):e38596. doi: 10.1371/journal.pone.0038596. Epub 2012 Jun 12.

12.

Tensile forces and shape entropy explain observed crista structure in mitochondria.

Ghochani M, Nulton JD, Salamon P, Frey TG, Rabinovitch A, Baljon AR.

Biophys J. 2010 Nov 17;99(10):3244-54. doi: 10.1016/j.bpj.2010.09.038.

13.

Viral and microbial community dynamics in four aquatic environments.

Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasić L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F.

ISME J. 2010 Jun;4(6):739-51. doi: 10.1038/ismej.2010.1. Epub 2010 Feb 11.

PMID:
20147985
14.

Viral diversity and dynamics in an infant gut.

Breitbart M, Haynes M, Kelley S, Angly F, Edwards RA, Felts B, Mahaffy JM, Mueller J, Nulton J, Rayhawk S, Rodriguez-Brito B, Salamon P, Rohwer F.

Res Microbiol. 2008 Jun;159(5):367-73. doi: 10.1016/j.resmic.2008.04.006. Epub 2008 May 1.

PMID:
18541415
15.

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.

Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB.

Appl Environ Microbiol. 2007 Nov;73(21):7059-66. Epub 2007 Sep 7.

16.

Power law rank-abundance models for marine phage communities.

Hoffmann KH, Rodriguez-Brito B, Breitbart M, Bangor D, Angly F, Felts B, Nulton J, Rohwer F, Salamon P.

FEMS Microbiol Lett. 2007 Aug;273(2):224-8. Epub 2007 Jun 7.

17.

The marine viromes of four oceanic regions.

Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F.

PLoS Biol. 2006 Nov;4(11):e368.

18.

Modeling tubular shapes in the inner mitochondrial membrane.

Ponnuswamy A, Nulton J, Mahaffy JM, Salamon P, Frey TG, Baljon AR.

Phys Biol. 2005 Mar;2(1):73-9.

PMID:
16204859
19.

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.

Angly F, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, Salamon P, Felts B, Nulton J, Mahaffy J, Rohwer F.

BMC Bioinformatics. 2005 Mar 2;6:41.

20.

Diversity and population structure of a near-shore marine-sediment viral community.

Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P, Rohwer F.

Proc Biol Sci. 2004 Mar 22;271(1539):565-74.

21.

Metagenomic analyses of an uncultured viral community from human feces.

Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F.

J Bacteriol. 2003 Oct;185(20):6220-3.

22.

A thermodynamic model describing the nature of the crista junction: a structural motif in the mitochondrion.

Renken C, Siragusa G, Perkins G, Washington L, Nulton J, Salamon P, Frey TG.

J Struct Biol. 2002 Apr-May;138(1-2):137-44.

PMID:
12160710
23.

Statistical approach to the geometric structure of thermodynamics.

Mrugala R, Nulton JD, Schön JC, Salamon P.

Phys Rev A. 1990 Mar 15;41(6):3156-3160. No abstract available.

PMID:
9903470
24.

Statistical mechanics of combinatorial optimization.

Nulton JD, Salamon P.

Phys Rev A Gen Phys. 1988 Feb 15;37(4):1351-1356. No abstract available.

PMID:
9899796
25.

Geometry of the ideal gas.

Nulton JD, Salamon P.

Phys Rev A Gen Phys. 1985 Apr;31(4):2520-2524. No abstract available.

PMID:
9895787

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