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The retinol-binding protein receptor STRA6 regulates diurnal insulin responses.

Gliniak CM, Brown JM, Noy N.

J Biol Chem. 2017 Sep 8;292(36):15080-15093. doi: 10.1074/jbc.M117.782334. Epub 2017 Jul 21.


RBP4-STRA6 Pathway Drives Cancer Stem Cell Maintenance and Mediates High-Fat Diet-Induced Colon Carcinogenesis.

Karunanithi S, Levi L, DeVecchio J, Karagkounis G, Reizes O, Lathia JD, Kalady MF, Noy N.

Stem Cell Reports. 2017 Aug 8;9(2):438-450. doi: 10.1016/j.stemcr.2017.06.002. Epub 2017 Jul 6.


Non-classical Transcriptional Activity of Retinoic Acid.

Noy N.

Subcell Biochem. 2016;81:179-199. Review.


RNA-binding protein HuR regulates nuclear import of protein.

Zhang W, Vreeland AC, Noy N.

J Cell Sci. 2016 Nov 1;129(21):4025-4033. Epub 2016 Sep 8.


Vitamin A in regulation of insulin responsiveness: mini review.

Noy N.

Proc Nutr Soc. 2016 May;75(2):212-5. doi: 10.1017/S0029665115004322. Epub 2016 Jan 5. Review.


Saturated fatty acids regulate retinoic acid signalling and suppress tumorigenesis by targeting fatty acid-binding protein 5.

Levi L, Wang Z, Doud MK, Hazen SL, Noy N.

Nat Commun. 2015 Nov 23;6:8794. doi: 10.1038/ncomms9794.


Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia.

Lamprecht D, Strohmaier M, Helic D, Nyulas C, Tudorache T, Noy NF, Musen MA.

Semant Web. 2015;6(4):403-422. Epub 2015 Aug 7.


Kruppel-like factor 2 suppresses mammary carcinoma growth by regulating retinoic acid signaling.

Zhang W, Levi L, Banerjee P, Jain M, Noy N.

Oncotarget. 2015 Nov 3;6(34):35830-42. doi: 10.18632/oncotarget.5767.


Intracranial recordings reveal transient response dynamics during information maintenance in human cerebral cortex.

Noy N, Bickel S, Zion-Golumbic E, Harel M, Golan T, Davidesco I, Schevon CA, McKhann GM, Goodman RR, Schroeder CE, Mehta AD, Malach R.

Hum Brain Mapp. 2015 Oct;36(10):3988-4003. doi: 10.1002/hbm.22892. Epub 2015 Jul 3.


Is retinol binding protein 4 a link between adiposity and cancer?

Noy N, Li L, Abola MV, Berger NA.

Horm Mol Biol Clin Investig. 2015 Aug;23(2):39-46. doi: 10.1515/hmbci-2015-0019. Review.


Analysis and Prediction of User Editing Patterns in Ontology Development Projects.

Wang H, Tudorache T, Dou D, Noy NF, Musen MA.

J Data Semant. 2015 Jun;4(2):117-132.


A unifying principle underlying the extracellular field potential spectral responses in the human cortex.

Podvalny E, Noy N, Harel M, Bickel S, Chechik G, Schroeder CE, Mehta AD, Tsodyks M, Malach R.

J Neurophysiol. 2015 Jul;114(1):505-19. doi: 10.1152/jn.00943.2014. Epub 2015 Apr 8.


Ignition's glow: Ultra-fast spread of global cortical activity accompanying local "ignitions" in visual cortex during conscious visual perception.

Noy N, Bickel S, Zion-Golumbic E, Harel M, Golan T, Davidesco I, Schevon CA, McKhann GM, Goodman RR, Schroeder CE, Mehta AD, Malach R.

Conscious Cogn. 2015 Sep;35:206-24. doi: 10.1016/j.concog.2015.03.006. Epub 2015 Mar 29.


Signaling by retinol and its serum binding protein.

Noy N.

Prostaglandins Leukot Essent Fatty Acids. 2015 Feb;93:3-7. doi: 10.1016/j.plefa.2014.10.004. Epub 2014 Oct 29.


Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT.

Mortensen JM, Minty EP, Januszyk M, Sweeney TE, Rector AL, Noy NF, Musen MA.

J Am Med Inform Assoc. 2015 May;22(3):640-8. doi: 10.1136/amiajnl-2014-002901. Epub 2014 Oct 23.


Cellular retinoic acid-binding protein 2 inhibits tumor growth by two distinct mechanisms.

Vreeland AC, Levi L, Zhang W, Berry DC, Noy N.

J Biol Chem. 2014 Dec 5;289(49):34065-73. doi: 10.1074/jbc.M114.604041. Epub 2014 Oct 15.


Holo-retinol-binding protein and its receptor STRA6 drive oncogenic transformation.

Berry DC, Levi L, Noy N.

Cancer Res. 2014 Nov 1;74(21):6341-51. doi: 10.1158/0008-5472.CAN-14-1052. Epub 2014 Sep 18.


Discovering beaten paths in collaborative ontology-engineering projects using Markov chains.

Walk S, Singer P, Strohmaier M, Tudorache T, Musen MA, Noy NF.

J Biomed Inform. 2014 Oct;51:254-71. doi: 10.1016/j.jbi.2014.06.004. Epub 2014 Jun 17.


Reply to "How free retinol behaves differently from RBP-bound retinol in RBP receptor-mediated vitamin A uptake".

Noy N.

Mol Cell Biol. 2014 Jun;34(11):2111-2. doi: 10.1128/MCB.01700-12. No abstract available.


Reply to "Apo-RBP, Holo-RBP, and insulin resistance".

Noy N.

Mol Cell Biol. 2014 Jun;34(11):2107. doi: 10.1128/MCB.01699-12. No abstract available.


WebProtégé: a collaborative Web-based platform for editing biomedical ontologies.

Horridge M, Tudorache T, Nuylas C, Vendetti J, Noy NF, Musen MA.

Bioinformatics. 2014 Aug 15;30(16):2384-5. doi: 10.1093/bioinformatics/btu256. Epub 2014 Apr 26.


Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor β/δ (FABP5-PPARβ/δ) signaling pathway.

Armstrong EH, Goswami D, Griffin PR, Noy N, Ortlund EA.

J Biol Chem. 2014 May 23;289(21):14941-54. doi: 10.1074/jbc.M113.514646. Epub 2014 Apr 1.


Transcript stabilization by the RNA-binding protein HuR is regulated by cellular retinoic acid-binding protein 2.

Vreeland AC, Yu S, Levi L, de Barros Rossetto D, Noy N.

Mol Cell Biol. 2014 Jun;34(12):2135-46. doi: 10.1128/MCB.00281-14. Epub 2014 Mar 31.


Crowdsourcing the verification of relationships in biomedical ontologies.

Mortensen JM, Musen MA, Noy NF.

AMIA Annu Symp Proc. 2013 Nov 16;2013:1020-9. eCollection 2013.


A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal.

He Z, Ochs C, Agrawal A, Perl Y, Zeginis D, Tarabanis K, Elhanan G, Halper M, Noy N, Geller J.

AMIA Annu Symp Proc. 2013 Nov 16;2013:581-90. eCollection 2013.


PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies.

Walk S, Pöschko J, Strohmaier M, Andrews K, Tudorache T, Noy NF, Nyulas C, Musen MA.

Int J Semant Web Inf Syst. 2013;9(1):45-78.


A Linked Science Investigation: Enhancing Climate Change Data Discovery with Semantic Technologies.

Pouchard LC, Branstetter ML, Cook RB, Devarakonda R, Green J, Palanisamy G, Alexander P, Noy NF.

Earth Sci Inform. 2013 Sep;6(3). doi: 10.1007/s12145-013-0118-2.


An empirically derived taxonomy of errors in SNOMED CT.

Mortensen JM, Musen MA, Noy NF.

AMIA Annu Symp Proc. 2014 Nov 14;2014:899-906. eCollection 2014.


Reasoning based quality assurance of medical ontologies: a case study.

Horridge M, Parsia B, Noy NF, Musenm MA.

AMIA Annu Symp Proc. 2014 Nov 14;2014:671-80. eCollection 2014.


How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects.

Strohmaier M, Walk S, Pöschko J, Lamprecht D, Tudorache T, Nyulas C, Musen MA, Noy NF.

Web Semant. 2013 May;20. doi: 10.1016/j.websem.2013.04.001.


The retinol esterifying enzyme LRAT supports cell signaling by retinol-binding protein and its receptor STRA6.

Marwarha G, Berry DC, Croniger CM, Noy N.

FASEB J. 2014 Jan;28(1):26-34. doi: 10.1096/fj.13-234310. Epub 2013 Sep 13.


The STRA6 receptor is essential for retinol-binding protein-induced insulin resistance but not for maintaining vitamin A homeostasis in tissues other than the eye.

Berry DC, Jacobs H, Marwarha G, Gely-Pernot A, O'Byrne SM, DeSantis D, Klopfenstein M, Feret B, Dennefeld C, Blaner WS, Croniger CM, Mark M, Noy N, Ghyselinck NB.

J Biol Chem. 2013 Aug 23;288(34):24528-39. doi: 10.1074/jbc.M113.484014. Epub 2013 Jul 9.


WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web.

Tudorache T, Nyulas C, Noy NF, Musen MA.

Semant Web. 2013 Jan 1;4(1):89-99.


Genetic ablation of the fatty acid-binding protein FABP5 suppresses HER2-induced mammary tumorigenesis.

Levi L, Lobo G, Doud MK, von Lintig J, Seachrist D, Tochtrop GP, Noy N.

Cancer Res. 2013 Aug 1;73(15):4770-80. doi: 10.1158/0008-5472.CAN-13-0384. Epub 2013 May 30.


Deriving an abstraction network to support quality assurance in OCRe.

Ochs C, Agrawal A, Perl Y, Halper M, Tu SW, Carini S, Sim I, Noy N, Musen M, Geller J.

AMIA Annu Symp Proc. 2012;2012:681-9. Epub 2012 Nov 3.


Applications of ontology design patterns in biomedical ontologies.

Mortensen JM, Horridge M, Musen MA, Noy NF.

AMIA Annu Symp Proc. 2012;2012:643-52. Epub 2012 Nov 3.


BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF.

Salvadores M, Alexander PR, Musen MA, Noy NF.

Semant Web. 2013;4(3):277-284.


Retinoic acid induces neurogenesis by activating both retinoic acid receptors (RARs) and peroxisome proliferator-activated receptor β/δ (PPARβ/δ).

Yu S, Levi L, Siegel R, Noy N.

J Biol Chem. 2012 Dec 7;287(50):42195-205. doi: 10.1074/jbc.M112.410381. Epub 2012 Oct 26.


Expression of the α-tocopherol transfer protein gene is regulated by oxidative stress and common single-nucleotide polymorphisms.

Ulatowski L, Dreussi C, Noy N, Barnholtz-Sloan J, Klein E, Manor D.

Free Radic Biol Med. 2012 Dec 15;53(12):2318-26. doi: 10.1016/j.freeradbiomed.2012.10.528. Epub 2012 Oct 16.


Transthyretin blocks retinol uptake and cell signaling by the holo-retinol-binding protein receptor STRA6.

Berry DC, Croniger CM, Ghyselinck NB, Noy N.

Mol Cell Biol. 2012 Oct;32(19):3851-9. doi: 10.1128/MCB.00775-12. Epub 2012 Jul 23.


Context-specific ontology integration: a bayesian approach.

Marwah K, Katzin D, Zollanvari A, Noy NF, Ramoni M, Alterovitz G.

AMIA Jt Summits Transl Sci Proc. 2012;2012:79-86. Epub 2012 Mar 19.


Cross talk between signaling and vitamin A transport by the retinol-binding protein receptor STRA6.

Berry DC, O'Byrne SM, Vreeland AC, Blaner WS, Noy N.

Mol Cell Biol. 2012 Aug;32(15):3164-75. doi: 10.1128/MCB.00505-12. Epub 2012 Jun 4.


Retinoic acid upregulates preadipocyte genes to block adipogenesis and suppress diet-induced obesity.

Berry DC, DeSantis D, Soltanian H, Croniger CM, Noy N.

Diabetes. 2012 May;61(5):1112-21. doi: 10.2337/db11-1620. Epub 2012 Mar 6.


The National Center for Biomedical Ontology.

Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B; NCBO team.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):190-5. doi: 10.1136/amiajnl-2011-000523. Epub 2011 Nov 10.


Nuclear translocation of cellular retinoic acid-binding protein II is regulated by retinoic acid-controlled SUMOylation.

Majumdar A, Petrescu AD, Xiong Y, Noy N.

J Biol Chem. 2011 Dec 9;286(49):42749-57. doi: 10.1074/jbc.M111.293464. Epub 2011 Oct 13.


NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources.

Jonquet C, Lependu P, Falconer S, Coulet A, Noy NF, Musen MA, Shah NH.

Web Semant. 2011 Sep 1;9(3):316-324.

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