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Items: 23

1.

The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders.

Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, Lowenstein DH, Li H, Agard D, Keiser MJ, Shoichet B, von Zastrow M, Mucke L, Finkbeiner S, Gan L, Sestan N, Ward ME, Huttenhain R, Nowakowski TJ, Bellen HJ, Frank LM, Khokha MK, Lifton RP, Kampmann M, Ideker T, State MW, Krogan NJ.

Cell. 2018 Jul 26;174(3):505-520. doi: 10.1016/j.cell.2018.06.016. Review.

PMID:
30053424
2.

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.

Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D.

Cell. 2018 May 31;173(6):1356-1369.e22. doi: 10.1016/j.cell.2018.03.051. Epub 2018 May 31.

PMID:
29856954
3.

An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder.

Werling DM, Brand H, An JY, Stone MR, Zhu L, Glessner JT, Collins RL, Dong S, Layer RM, Markenscoff-Papadimitriou E, Farrell A, Schwartz GB, Wang HZ, Currall BB, Zhao X, Dea J, Duhn C, Erdman CA, Gilson MC, Yadav R, Handsaker RE, Kashin S, Klei L, Mandell JD, Nowakowski TJ, Liu Y, Pochareddy S, Smith L, Walker MF, Waterman MJ, He X, Kriegstein AR, Rubenstein JL, Sestan N, McCarroll SA, Neale BM, Coon H, Willsey AJ, Buxbaum JD, Daly MJ, State MW, Quinlan AR, Marth GT, Roeder K, Devlin B, Talkowski ME, Sanders SJ.

Nat Genet. 2018 May;50(5):727-736. doi: 10.1038/s41588-018-0107-y. Epub 2018 Apr 26.

PMID:
29700473
4.

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.

Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR.

Science. 2017 Dec 8;358(6368):1318-1323. doi: 10.1126/science.aap8809.

5.

Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia.

Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR.

Cell Stem Cell. 2017 Apr 6;20(4):435-449.e4. doi: 10.1016/j.stem.2016.12.007. Epub 2017 Jan 19.

6.

The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells.

Gambardella G, Carissimo A, Chen A, Cutillo L, Nowakowski TJ, di Bernardo D, Blelloch R.

Nat Commun. 2017 Jan 19;8:14126. doi: 10.1038/ncomms14126.

7.

Zika virus cell tropism in the developing human brain and inhibition by azithromycin.

Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14408-14413. Epub 2016 Nov 29.

8.

Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas.

Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A.

Mol Syst Biol. 2016 Nov 25;12(11):889. doi: 10.15252/msb.20166969.

9.

Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development.

Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR.

Neuron. 2016 Sep 21;91(6):1219-1227. doi: 10.1016/j.neuron.2016.09.005.

10.

A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA.

Rani N, Nowakowski TJ, Zhou H, Godshalk SE, Lisi V, Kriegstein AR, Kosik KS.

Neuron. 2016 Jun 15;90(6):1174-1188. doi: 10.1016/j.neuron.2016.05.005. Epub 2016 Jun 2.

11.

SCell: integrated analysis of single-cell RNA-seq data.

Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A.

Bioinformatics. 2016 Jul 15;32(14):2219-20. doi: 10.1093/bioinformatics/btw201. Epub 2016 Apr 19.

12.

Single-cell analysis of long non-coding RNAs in the developing human neocortex.

Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA.

Genome Biol. 2016 Apr 14;17:67. doi: 10.1186/s13059-016-0932-1.

13.

Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells.

Nowakowski TJ, Pollen AA, Di Lullo E, Sandoval-Espinosa C, Bershteyn M, Kriegstein AR.

Cell Stem Cell. 2016 May 5;18(5):591-6. doi: 10.1016/j.stem.2016.03.012. Epub 2016 Mar 30.

14.

Molecular identity of human outer radial glia during cortical development.

Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR.

Cell. 2015 Sep 24;163(1):55-67. doi: 10.1016/j.cell.2015.09.004.

15.

The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.

Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz C, Salinas RD, Zarabi H, Kriegstein AR, Lim DA.

Cell Stem Cell. 2015 Apr 2;16(4):439-447. doi: 10.1016/j.stem.2015.02.007. Epub 2015 Mar 19.

16.

Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex.

Lui JH, Nowakowski TJ, Pollen AA, Javaherian A, Kriegstein AR, Oldham MC.

Nature. 2014 Nov 13;515(7526):264-8. doi: 10.1038/nature13973.

17.

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.

Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, Toppani D, Kemp DW 2nd, Wong M, Clerkson B, Jones BN, Wu S, Knutsson L, Alvarado B, Wang J, Weaver LS, May AP, Jones RC, Unger MA, Kriegstein AR, West JA.

Nat Biotechnol. 2014 Oct;32(10):1053-8. doi: 10.1038/nbt.2967. Epub 2014 Aug 3.

18.

Loss of functional Dicer in mouse radial glia cell-autonomously prolongs cortical neurogenesis.

Nowakowski TJ, Mysiak KS, O'Leary T, Fotaki V, Pratt T, Price DJ.

Dev Biol. 2013 Oct 15;382(2):530-7. doi: 10.1016/j.ydbio.2013.08.023. Epub 2013 Sep 5.

19.

MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain.

Nowakowski TJ, Fotaki V, Pollock A, Sun T, Pratt T, Price DJ.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):7056-61. doi: 10.1073/pnas.1219385110. Epub 2013 Apr 8.

20.

The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo.

Pratt T, Davey JW, Nowakowski TJ, Raasumaa C, Rawlik K, McBride D, Clinton M, Mason JO, Price DJ.

BMC Neurosci. 2012 Feb 23;13:20. doi: 10.1186/1471-2202-13-20.

21.

Functional dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon.

Nowakowski TJ, Mysiak KS, Pratt T, Price DJ.

PLoS One. 2011;6(8):e23013. doi: 10.1371/journal.pone.0023013. Epub 2011 Aug 3.

22.

Novel lines of Pax6-/- embryonic stem cells exhibit reduced neurogenic capacity without loss of viability.

Quinn JC, Molinek M, Nowakowski TJ, Mason JO, Price DJ.

BMC Neurosci. 2010 Feb 24;11:26. doi: 10.1186/1471-2202-11-26.

23.

Time-Multiplexed Laguerre-Gaussian holographic optical tweezers for biological applications.

Lafong A, Hossack WJ, Arlt J, Nowakowski TJ, Read ND.

Opt Express. 2006 Apr 3;14(7):3065-72.

PMID:
19516447

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