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Items: 50

1.

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing.

Kim JH, Dilthey AT, Nagaraja R, Lee HS, Koren S, Dudekula D, Wood Iii WH, Piao Y, Ogurtsov AY, Utani K, Noskov VN, Shabalina SA, Schlessinger D, Phillippy AM, Larionov V.

Nucleic Acids Res. 2018 Jul 27;46(13):6712-6725. doi: 10.1093/nar/gky442.

2.

Analysis of the 9p21.3 sequence associated with coronary artery disease reveals a tendency for duplication in a CAD patient.

Kouprina N, Liskovykh M, Lee NCO, Noskov VN, Waterfall JJ, Walker RL, Meltzer PS, Topol EJ, Larionov V.

Oncotarget. 2018 Feb 26;9(20):15275-15291. doi: 10.18632/oncotarget.24567. eCollection 2018 Mar 16.

3.

Genome-wide engineering of an infectious clone of herpes simplex virus type 1 using synthetic genomics assembly methods.

Oldfield LM, Grzesik P, Voorhies AA, Alperovich N, MacMath D, Najera CD, Chandra DS, Prasad S, Noskov VN, Montague MG, Friedman RM, Desai PJ, Vashee S.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8885-E8894. doi: 10.1073/pnas.1700534114. Epub 2017 Sep 19.

4.

One step engineering of the small-subunit ribosomal RNA using CRISPR/Cas9.

Kannan K, Tsvetanova B, Chuang RY, Noskov VN, Assad-Garcia N, Ma L, Hutchison Iii CA, Smith HO, Glass JI, Merryman C, Venter JC, Gibson DG.

Sci Rep. 2016 Aug 4;6:30714. doi: 10.1038/srep30714.

5.

Design and synthesis of a minimal bacterial genome.

Hutchison CA 3rd, Chuang RY, Noskov VN, Assad-Garcia N, Deerinck TJ, Ellisman MH, Gill J, Kannan K, Karas BJ, Ma L, Pelletier JF, Qi ZQ, Richter RA, Strychalski EA, Sun L, Suzuki Y, Tsvetanova B, Wise KS, Smith HO, Glass JI, Merryman C, Gibson DG, Venter JC.

Science. 2016 Mar 25;351(6280):aad6253. doi: 10.1126/science.aad6253. Erratum in: ACS Chem Biol. 2016 May 20;11(5):1463.

PMID:
27013737
6.

Recombinase-mediated cassette exchange (RMCE) system for functional genomics studies in Mycoplasma mycoides.

Noskov VN, Ma L, Chen S, Chuang RY.

Biol Proced Online. 2015 Mar 2;17:6. doi: 10.1186/s12575-015-0016-8. eCollection 2015.

7.

Bacterial genome reduction using the progressive clustering of deletions via yeast sexual cycling.

Suzuki Y, Assad-Garcia N, Kostylev M, Noskov VN, Wise KS, Karas BJ, Stam J, Montague MG, Hanly TJ, Enriquez NJ, Ramon A, Goldgof GM, Richter RA, Vashee S, Chuang RY, Winzeler EA, Hutchison CA 3rd, Gibson DG, Smith HO, Glass JI, Venter JC.

Genome Res. 2015 Mar;25(3):435-44. doi: 10.1101/gr.182477.114. Epub 2015 Feb 5.

8.

TREC-IN: gene knock-in genetic tool for genomes cloned in yeast.

Chandran S, Noskov VN, Segall-Shapiro TH, Ma L, Whiteis C, Lartigue C, Jores J, Vashee S, Chuang RY.

BMC Genomics. 2014 Dec 24;15:1180. doi: 10.1186/1471-2164-15-1180.

9.

Assembly of eukaryotic algal chromosomes in yeast.

Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Weyman PD.

J Biol Eng. 2013 Dec 10;7(1):30. doi: 10.1186/1754-1611-7-30.

10.

Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase.

Lada AG, Stepchenkova EI, Waisertreiger IS, Noskov VN, Dhar A, Eudy JD, Boissy RJ, Hirano M, Rogozin IB, Pavlov YI.

PLoS Genet. 2013;9(9):e1003736. doi: 10.1371/journal.pgen.1003736. Epub 2013 Sep 5.

11.

Assembly of large, high G+C bacterial DNA fragments in yeast.

Noskov VN, Karas BJ, Young L, Chuang RY, Gibson DG, Lin YC, Stam J, Yonemoto IT, Suzuki Y, Andrews-Pfannkoch C, Glass JI, Smith HO, Hutchison CA 3rd, Venter JC, Weyman PD.

ACS Synth Biol. 2012 Jul 20;1(7):267-73. doi: 10.1021/sb3000194. Epub 2012 May 21.

PMID:
23651249
12.

Breaking the HAC Barrier: histone H3K9 acetyl/methyl balance regulates CENP-A assembly.

Ohzeki J, Bergmann JH, Kouprina N, Noskov VN, Nakano M, Kimura H, Earnshaw WC, Larionov V, Masumoto H.

EMBO J. 2012 May 16;31(10):2391-402. doi: 10.1038/emboj.2012.82. Epub 2012 Apr 3.

13.

Rapid generation of long tandem DNA repeat arrays by homologous recombination in yeast to study their function in mammalian genomes.

Noskov VN, Lee NC, Larionov V, Kouprina N.

Biol Proced Online. 2011 Oct 7;13(1):8. doi: 10.1186/1480-9222-13-8.

14.

Isolation of circular yeast artificial chromosomes for synthetic biology and functional genomics studies.

Noskov VN, Chuang RY, Gibson DG, Leem SH, Larionov V, Kouprina N.

Nat Protoc. 2011 Jan;6(1):89-96. doi: 10.1038/nprot.2010.174. Epub 2010 Dec 23.

PMID:
21212778
15.

Creation of a bacterial cell controlled by a chemically synthesized genome.

Gibson DG, Glass JI, Lartigue C, Noskov VN, Chuang RY, Algire MA, Benders GA, Montague MG, Ma L, Moodie MM, Merryman C, Vashee S, Krishnakumar R, Assad-Garcia N, Andrews-Pfannkoch C, Denisova EA, Young L, Qi ZQ, Segall-Shapiro TH, Calvey CH, Parmar PP, Hutchison CA 3rd, Smith HO, Venter JC.

Science. 2010 Jul 2;329(5987):52-6. doi: 10.1126/science.1190719. Epub 2010 May 20.

16.

Tandem repeat coupled with endonuclease cleavage (TREC): a seamless modification tool for genome engineering in yeast.

Noskov VN, Segall-Shapiro TH, Chuang RY.

Nucleic Acids Res. 2010 May;38(8):2570-6. doi: 10.1093/nar/gkq099. Epub 2010 Mar 12.

17.

Cloning whole bacterial genomes in yeast.

Benders GA, Noskov VN, Denisova EA, Lartigue C, Gibson DG, Assad-Garcia N, Chuang RY, Carrera W, Moodie M, Algire MA, Phan Q, Alperovich N, Vashee S, Merryman C, Venter JC, Smith HO, Glass JI, Hutchison CA 3rd.

Nucleic Acids Res. 2010 May;38(8):2558-69. doi: 10.1093/nar/gkq119. Epub 2010 Mar 7.

18.

Creating bacterial strains from genomes that have been cloned and engineered in yeast.

Lartigue C, Vashee S, Algire MA, Chuang RY, Benders GA, Ma L, Noskov VN, Denisova EA, Gibson DG, Assad-Garcia N, Alperovich N, Thomas DW, Merryman C, Hutchison CA 3rd, Smith HO, Venter JC, Glass JI.

Science. 2009 Sep 25;325(5948):1693-6. doi: 10.1126/science.1173759. Epub 2009 Aug 20.

19.

Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing.

Kim JH, Ebersole T, Kouprina N, Noskov VN, Ohzeki J, Masumoto H, Mravinac B, Sullivan BA, Pavlicek A, Dovat S, Pack SD, Kwon YW, Flanagan PT, Loukinov D, Lobanenkov V, Larionov V.

Genome Res. 2009 Apr;19(4):533-44. doi: 10.1101/gr.086496.108. Epub 2009 Jan 13.

20.

Inactivation of a human kinetochore by specific targeting of chromatin modifiers.

Nakano M, Cardinale S, Noskov VN, Gassmann R, Vagnarelli P, Kandels-Lewis S, Larionov V, Earnshaw WC, Masumoto H.

Dev Cell. 2008 Apr;14(4):507-22. doi: 10.1016/j.devcel.2008.02.001.

21.

Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J, Stockwell TB, Brownley A, Thomas DW, Algire MA, Merryman C, Young L, Noskov VN, Glass JI, Venter JC, Hutchison CA 3rd, Smith HO.

Science. 2008 Feb 29;319(5867):1215-20. doi: 10.1126/science.1151721. Epub 2008 Jan 24.

22.

Evolutionary diversification of SPANX-N sperm protein gene structure and expression.

Kouprina N, Noskov VN, Pavlicek A, Collins NK, Schoppee Bortz PD, Ottolenghi C, Loukinov D, Goldsmith P, Risinger JI, Kim JH, Westbrook VA, Solomon G, Sounders H, Herr JC, Jurka J, Lobanenkov V, Schlessinger D, Larionov V.

PLoS One. 2007 Apr 4;2(4):e359.

23.

Mutational analysis of SPANX genes in families with X-linked prostate cancer.

Kouprina N, Noskov VN, Solomon G, Otstot J, Isaacs W, Xu J, Schleutker J, Larionov V.

Prostate. 2007 Jun 1;67(8):820-8.

PMID:
17373721
25.

Dynamic structure of the SPANX gene cluster mapped to the prostate cancer susceptibility locus HPCX at Xq27.

Kouprina N, Pavlicek A, Noskov VN, Solomon G, Otstot J, Isaacs W, Carpten JD, Trent JM, Schleutker J, Barrett JC, Jurka J, Larionov V.

Genome Res. 2005 Nov;15(11):1477-86.

26.

Rapid generation of long synthetic tandem repeats and its application for analysis in human artificial chromosome formation.

Ebersole T, Okamoto Y, Noskov VN, Kouprina N, Kim JH, Leem SH, Barrett JC, Masumoto H, Larionov V.

Nucleic Acids Res. 2005 Sep 1;33(15):e130.

27.

The Saccharomyces cerevisiae ESU1 gene, which is responsible for enhancement of termination suppression, corresponds to the 3'-terminal half of GAL11.

Ono B, Futase T, Honda W, Yoshida R, Nakano K, Yamamoto T, Nakajima E, Noskov VN, Negishi K, Chen B, Chernoff YO.

Yeast. 2005 Aug;22(11):895-906.

28.

The microcephaly ASPM gene is expressed in proliferating tissues and encodes for a mitotic spindle protein.

Kouprina N, Pavlicek A, Collins NK, Nakano M, Noskov VN, Ohzeki J, Mochida GH, Risinger JI, Goldsmith P, Gunsior M, Solomon G, Gersch W, Kim JH, Barrett JC, Walsh CA, Jurka J, Masumoto H, Larionov V.

Hum Mol Genet. 2005 Aug 1;14(15):2155-65. Epub 2005 Jun 22.

PMID:
15972725
29.

Evolution of the tumor suppressor BRCA1 locus in primates: implications for cancer predisposition.

Pavlicek A, Noskov VN, Kouprina N, Barrett JC, Jurka J, Larionov V.

Hum Mol Genet. 2004 Nov 15;13(22):2737-51. Epub 2004 Sep 22.

PMID:
15385441
30.

Exploring transformation-associated recombination cloning for selective isolation of genomic regions.

Kouprina N, Noskov VN, Koriabine M, Leem SH, Larionov V.

Methods Mol Biol. 2004;255:69-89. No abstract available.

PMID:
15020816
31.

Transformation-associated recombination (TAR) cloning of tumor-inducing Xmrk2 gene from Xiphophorus maculatus.

Kirchner JM, Ivanova V, Samson A, Noskov VN, Volff JN, Resnick MA, Walter RB.

Mar Biotechnol (NY). 2001 Jun;3(Supplement 1):S168-76.

PMID:
14961313
32.

A novel strategy for analysis of gene homologues and segmental genome duplications.

Noskov VN, Leem SH, Solomon G, Mullokandov M, Chae JY, Yoon YH, Shin YS, Kouprina N, Larionov V.

J Mol Evol. 2003 Jun;56(6):702-10.

PMID:
12911033
33.

A general cloning system to selectively isolate any eukaryotic or prokaryotic genomic region in yeast.

Noskov VN, Kouprina N, Leem SH, Ouspenski I, Barrett JC, Larionov V.

BMC Genomics. 2003 Apr 29;4(1):16. Epub 2003 Apr 29.

34.

Optimum conditions for selective isolation of genes from complex genomes by transformation-associated recombination cloning.

Leem SH, Noskov VN, Park JE, Kim SI, Larionov V, Kouprina N.

Nucleic Acids Res. 2003 Mar 15;31(6):e29.

35.

Difference between deoxyribose- and tetrahydrofuran-type abasic sites in the in vivo mutagenic responses in yeast.

Otsuka C, Sanadai S, Hata Y, Okuto H, Noskov VN, Loakes D, Negishi K.

Nucleic Acids Res. 2002 Dec 1;30(23):5129-35.

36.

Use of yeast transformation by oligonucleotides to study DNA lesion bypass in vivo.

Otsuka C, Kobayashi K, Kawaguchi N, Kunitomi N, Moriyama K, Hata Y, Iwai S, Loakes D, Noskov VN, Pavlov Y, Negishi K.

Mutat Res. 2002 May 22;502(1-2):53-60.

PMID:
11996972
37.

Defining the minimal length of sequence homology required for selective gene isolation by TAR cloning.

Noskov VN, Koriabine M, Solomon G, Randolph M, Barrett JC, Leem SH, Stubbs L, Kouprina N, Larionov V.

Nucleic Acids Res. 2001 Mar 15;29(6):E32.

38.

Mutagenic specificity of the base analog 6-N-hydroxylaminopurine in the LYS2 gene of yeast Saccharomyces cerevisiae.

Kulikov VV, Derkatch IL, Noskov VN, Tarunina OV, Chernoff YO, Rogozin IB, Pavlov YI.

Mutat Res. 2001 Feb 20;473(2):151-61.

PMID:
11166033
39.

Radial transformation-associated recombination cloning from the mouse genome: isolation of Tg.AC transgene with flanking DNAs.

Humble MC, Kouprina N, Noskov VN, Graves J, Garner E, Tennant RW, Resnick MA, Larionov V, Cannon RE.

Genomics. 2000 Dec 15;70(3):292-9.

PMID:
11161779
40.
41.

Multiple antimutagenesis mechanisms affect mutagenic activity and specificity of the base analog 6-N-hydroxylaminopurine in bacteria and yeast.

Kozmin SG, Schaaper RM, Shcherbakova PV, Kulikov VN, Noskov VN, Guetsova ML, Alenin VV, Rogozin IB, Makarova KS, Pavlov YI.

Mutat Res. 1998 Jun 18;402(1-2):41-50. Review.

PMID:
9675240
43.

Base analog 6-N-hydroxylaminopurine mutagenesis in the yeast Saccharomyces cerevisiae is controlled by replicative DNA polymerases.

Shcherbakova PV, Noskov VN, Pshenichnov MR, Pavlov YI.

Mutat Res. 1996 Jul 10;369(1-2):33-44.

PMID:
8700180
44.

HAM1, the gene controlling 6-N-hydroxylaminopurine sensitivity and mutagenesis in the yeast Saccharomyces cerevisiae.

Noskov VN, Staak K, Shcherbakova PV, Kozmin SG, Negishi K, Ono BC, Hayatsu H, Pavlov YI.

Yeast. 1996 Jan;12(1):17-29.

45.
47.

The genetic activity of N6-hydroxyadenine and 2-amino-N6-hydroxyadenine in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae.

Pavlov YI, Noskov VN, Lange EK, Moiseeva EV, Pshenichnov MR, Khromov-Borisov NN.

Mutat Res. 1991 Aug;253(1):33-46.

PMID:
1870608
48.

[Genetic analysis of spontaneous and 6-N-hydroxylaminopurine and propiolactone induced Adp+ mutants in Saccharomyces yeasts].

Noskov VN, Tarutina MG, Chernov IuO, Gordenin DA, Pavlov IuI.

Genetika. 1990 Jul;26(7):1169-77. Russian.

PMID:
2227398
49.

[Development of a system of intragenic mapping for molecular genetic analysis of mutations in the gene LYS2 of Saccharomyces yeasts].

Noskov VN, Tarutina MG, Pavlov IuI, Kulikov VN, Trofimova MV, Gorbacheva AV, Chernov IuO, Sasnauskas KV, Neń≠stat MA, Tolstorukov II, et al.

Genetika. 1990 Jul;26(7):1161-8. Russian.

PMID:
2227397
50.

[Mutability of LYS2 gene in diploid Saccharomyces yeasts. II. Frequency of mutants induced by 6-N-hydroxylaminopurine and propiolactone].

Pavlov IuI, Noskov VN, Chernov IuO, Gordenin DA.

Genetika. 1988 Oct;24(10):1752-60. Russian.

PMID:
3069577

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