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Items: 10

1.

Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions.

Zhou P, Li Z, Magnusson E, Cano FAG, Crisp PA, Noshay J, Grotewold E, Hirsch C, Briggs SP, Springer NM.

Plant Cell. 2020 Mar 17. pii: tpc.00080.2020. doi: 10.1105/tpc.20.00080. [Epub ahead of print]

2.

Author Correction: Widespread long-range cis-regulatory elements in the maize genome.

Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, Buckler ES, Gallavotti A, Springer NM, Schmitz RJ, Zhang X.

Nat Plants. 2020 Mar;6(3):328. doi: 10.1038/s41477-020-0600-z.

PMID:
32029893
3.

Widespread long-range cis-regulatory elements in the maize genome.

Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, Buckler ES, Gallavotti A, Springer NM, Schmitz RJ, Zhang X.

Nat Plants. 2019 Dec;5(12):1237-1249. doi: 10.1038/s41477-019-0547-0. Epub 2019 Nov 18. Erratum in: Nat Plants. 2020 Mar;6(3):328.

PMID:
31740773
4.

Monitoring the interplay between transposable element families and DNA methylation in maize.

Noshay JM, Anderson SN, Zhou P, Ji L, Ricci W, Lu Z, Stitzer MC, Crisp PA, Hirsch CN, Zhang X, Schmitz RJ, Springer NM.

PLoS Genet. 2019 Sep 9;15(9):e1008291. doi: 10.1371/journal.pgen.1008291. eCollection 2019 Sep.

5.

Identification of the expressome by machine learning on omics data.

Sartor RC, Noshay J, Springer NM, Briggs SP.

Proc Natl Acad Sci U S A. 2019 Sep 3;116(36):18119-18125. doi: 10.1073/pnas.1813645116. Epub 2019 Aug 16.

6.

Transposable elements contribute to dynamic genome content in maize.

Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM.

Plant J. 2019 Dec;100(5):1052-1065. doi: 10.1111/tpj.14489. Epub 2019 Sep 18.

PMID:
31381222
7.

Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize.

Xue W, Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X, Springer NM, Doebley JF.

Genetics. 2019 Sep;213(1):143-160. doi: 10.1534/genetics.119.302378. Epub 2019 Jul 18.

8.

Opportunities to Use DNA Methylation to Distil Functional Elements in Large Crop Genomes.

Crisp PA, Noshay JM, Anderson SN, Springer NM.

Mol Plant. 2019 Mar 4;12(3):282-284. doi: 10.1016/j.molp.2019.02.006. Epub 2019 Feb 22. No abstract available.

9.

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.

PMID:
30061736
10.

Natural variation for gene expression responses to abiotic stress in maize.

Waters AJ, Makarevitch I, Noshay J, Burghardt LT, Hirsch CN, Hirsch CD, Springer NM.

Plant J. 2017 Feb;89(4):706-717. doi: 10.1111/tpj.13414. Epub 2017 Feb 11.

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