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Items: 14

1.

Nucleosome spacing periodically modulates nucleosome chain folding and DNA topology in circular nucleosome arrays.

Bass MV, Nikitina T, Norouzi D, Zhurkin VB, Grigoryev SA.

J Biol Chem. 2019 Mar 15;294(11):4233-4246. doi: 10.1074/jbc.RA118.006412. Epub 2019 Jan 10.

PMID:
30630950
2.

Dynamics of Chromatin Fibers: Comparison of Monte Carlo Simulations with Force Spectroscopy.

Norouzi D, Zhurkin VB.

Biophys J. 2018 Nov 6;115(9):1644-1655. doi: 10.1016/j.bpj.2018.06.032. Epub 2018 Aug 30.

3.

Revisit of Reconstituted 30-nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures.

Zhou BR, Jiang J, Ghirlando R, Norouzi D, Sathish Yadav KN, Feng H, Wang R, Zhang P, Zhurkin V, Bai Y.

J Mol Biol. 2018 Sep 14;430(18 Pt B):3093-3110. doi: 10.1016/j.jmb.2018.06.020. Epub 2018 Jun 27.

PMID:
29959925
4.

DNA topology in chromatin is defined by nucleosome spacing.

Nikitina T, Norouzi D, Grigoryev SA, Zhurkin VB.

Sci Adv. 2017 Oct 27;3(10):e1700957. doi: 10.1126/sciadv.1700957. eCollection 2017 Oct.

5.

Regulation of chromatin folding by conformational variations of nucleosome linker DNA.

Buckwalter JM, Norouzi D, Harutyunyan A, Zhurkin VB, Grigoryev SA.

Nucleic Acids Res. 2017 Sep 19;45(16):9372-9387. doi: 10.1093/nar/gkx562.

6.

Effect of Cichorium intybus L. seed extract on renal parameters in experimentally induced early and late diabetes type 2 in rats.

Pourfarjam Y, Rezagholizadeh L, Nowrouzi A, Meysamie A, Ghaseminejad S, Ziamajidi N, Norouzi D.

Ren Fail. 2017 Nov;39(1):211-221. doi: 10.1080/0886022X.2016.1256317. Epub 2016 Nov 16.

7.

Interaction of hemin with quadruplex DNA.

Ghahremani Nasab M, Hassani L, Mohammadi Nejad S, Norouzi D.

J Biol Phys. 2017 Mar;43(1):5-14. doi: 10.1007/s10867-016-9430-7. Epub 2016 Oct 17.

8.

Investigating actinomycin D binding to G-quadruplex, i-motif and double-stranded DNA in 27-nt segment of c-MYC gene promoter.

Niknezhad Z, Hassani L, Norouzi D.

Mater Sci Eng C Mater Biol Appl. 2016 Jan 1;58:1188-93. doi: 10.1016/j.msec.2015.09.072. Epub 2015 Sep 25.

PMID:
26478420
9.

Topological polymorphism of the two-start chromatin fiber.

Norouzi D, Zhurkin VB.

Biophys J. 2015 May 19;108(10):2591-2600. doi: 10.1016/j.bpj.2015.04.015.

10.

Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription.

Norouzi D, Katebi A, Cui F, Zhurkin VB.

AIMS Biophys. 2015;2(4):613-629. doi: 10.3934/biophy.2015.4.613. Epub 2015 Nov 3.

11.

DNA conformation and energy in nucleosome core: a theoretical approach.

Norouzi D, Mohammad-Rafiee F.

J Biomol Struct Dyn. 2014;32(1):104-14. doi: 10.1080/07391102.2012.755134. Epub 2013 Feb 5.

PMID:
23384279
12.

Distribution of counterions and interaction between two similarly charged dielectric slabs: roles of charge discreteness and dielectric inhomogeneity.

Pezeshkian W, Nikoofard N, Norouzi D, Mohammad-Rafiee F, Fazli H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061925. Epub 2012 Jun 28.

PMID:
23005145
13.

Effect of bending anisotropy on the 3D conformation of short DNA loops.

Norouzi D, Mohammad-Rafiee F, Golestanian R.

Phys Rev Lett. 2008 Oct 17;101(16):168103. Epub 2008 Oct 17.

PMID:
18999717
14.

How to determine local elastic properties of lipid bilayer membranes from atomic-force-microscope measurements: a theoretical analysis.

Norouzi D, Müller MM, Deserno M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Dec;74(6 Pt 1):061914. Epub 2006 Dec 29.

PMID:
17280103

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