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Items: 21

1.

MadID, a Versatile Approach to Map Protein-DNA Interactions, Highlights Telomere-Nuclear Envelope Contact Sites in Human Cells.

Sobecki M, Souaid C, Boulay J, Guerineau V, Noordermeer D, Crabbe L.

Cell Rep. 2018 Dec 4;25(10):2891-2903.e5. doi: 10.1016/j.celrep.2018.11.027.

2.

GKAP Acts as a Genetic Modulator of NMDAR Signaling to Govern Invasive Tumor Growth.

Li L, Zeng Q, Bhutkar A, Galván JA, Karamitopoulou E, Noordermeer D, Peng MW, Piersigilli A, Perren A, Zlobec I, Robinson H, Iruela-Arispe ML, Hanahan D.

Cancer Cell. 2018 Apr 9;33(4):736-751.e5. doi: 10.1016/j.ccell.2018.02.011. Epub 2018 Mar 29.

3.

Large scale genomic reorganization of topological domains at the HoxD locus.

Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L, Duboule D.

Genome Biol. 2017 Aug 7;18(1):149. doi: 10.1186/s13059-017-1278-z.

4.

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.

Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas-Chollier M, Noordermeer D, Charnay P, Gilardi-Hebenstreit P.

PLoS Genet. 2017 Jul 27;13(7):e1006903. doi: 10.1371/journal.pgen.1006903. eCollection 2017 Jul.

5.

Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq).

Matelot M, Noordermeer D.

Methods Mol Biol. 2016;1480:223-41. doi: 10.1007/978-1-4939-6380-5_20.

PMID:
27659989
6.

Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase.

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE.

Nature. 2016 Sep 8;537(7619):254. doi: 10.1038/nature18962. Epub 2016 Jul 13. No abstract available.

PMID:
27409805
7.

Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain.

Vieux-Rochas M, Fabre PJ, Leleu M, Duboule D, Noordermeer D.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4672-7. doi: 10.1073/pnas.1504783112. Epub 2015 Mar 30.

8.

Enhancer loops appear stable during development and are associated with paused polymerase.

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE.

Nature. 2014 Aug 7;512(7512):96-100. doi: 10.1038/nature13417. Epub 2014 Jul 2.

PMID:
25043061
9.

Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci.

Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D.

Elife. 2014 Apr 29;3:e02557. doi: 10.7554/eLife.02557.

10.

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.

David FP, Delafontaine J, Carat S, Ross FJ, Lefebvre G, Jarosz Y, Sinclair L, Noordermeer D, Rougemont J, Leleu M.

PLoS One. 2014 Jan 27;9(1):e85879. doi: 10.1371/journal.pone.0085879. eCollection 2014.

11.

Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits.

Woltering JM, Noordermeer D, Leleu M, Duboule D.

PLoS Biol. 2014 Jan;12(1):e1001773. doi: 10.1371/journal.pbio.1001773. Epub 2014 Jan 21.

12.

Chromatin looping and organization at developmentally regulated gene loci.

Noordermeer D, Duboule D.

Wiley Interdiscip Rev Dev Biol. 2013 Sep-Oct;2(5):615-30. doi: 10.1002/wdev.103. Epub 2013 Jan 3. Review.

PMID:
24014450
13.

A switch between topological domains underlies HoxD genes collinearity in mouse limbs.

Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M, Trono D, Spitz F, Duboule D.

Science. 2013 Jun 7;340(6137):1234167. doi: 10.1126/science.1234167.

14.

Chromatin architectures and Hox gene collinearity.

Noordermeer D, Duboule D.

Curr Top Dev Biol. 2013;104:113-48. doi: 10.1016/B978-0-12-416027-9.00004-8. Review.

PMID:
23587240
15.

The dynamic architecture of Hox gene clusters.

Noordermeer D, Leleu M, Splinter E, Rougemont J, De Laat W, Duboule D.

Science. 2011 Oct 14;334(6053):222-5. doi: 10.1126/science.1207194.

16.

Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.

Gheldof N, Leleu M, Noordermeer D, Rougemont J, Reymond A.

Methods Mol Biol. 2012;786:211-25. doi: 10.1007/978-1-61779-292-2_13.

PMID:
21938629
17.

Variegated gene expression caused by cell-specific long-range DNA interactions.

Noordermeer D, de Wit E, Klous P, van de Werken H, Simonis M, Lopez-Jones M, Eussen B, de Klein A, Singer RH, de Laat W.

Nat Cell Biol. 2011 Jun 26;13(8):944-51. doi: 10.1038/ncb2278.

18.

Joining the loops: beta-globin gene regulation.

Noordermeer D, de Laat W.

IUBMB Life. 2008 Dec;60(12):824-33. doi: 10.1002/iub.129. Review.

19.

Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region.

Noordermeer D, Branco MR, Splinter E, Klous P, van Ijcken W, Swagemakers S, Koutsourakis M, van der Spek P, Pombo A, de Laat W.

PLoS Genet. 2008 Mar 7;4(3):e1000016. doi: 10.1371/journal.pgen.1000016. Erratum in: PLoS Genet. 2008 Mar;4(3). doi: 10.1371/annotation/b4241c5d-5403-4797-8579-913ef9be560b. Pombo, Ana [added].

20.

Three-dimensional organization of gene expression in erythroid cells.

de Laat W, Klous P, Kooren J, Noordermeer D, Palstra RJ, Simonis M, Splinter E, Grosveld F.

Curr Top Dev Biol. 2008;82:117-39. doi: 10.1016/S0070-2153(07)00005-1. Review.

PMID:
18282519
21.

Secondary metabolic gene cluster silencing in Aspergillus nidulans.

Bok JW, Noordermeer D, Kale SP, Keller NP.

Mol Microbiol. 2006 Sep;61(6):1636-45.

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