Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 157

1.

Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya: A controlled interrupted time series analysis.

Otieno GP, Bottomley C, Khagayi S, Adetifa I, Ngama M, Omore R, Ogwel B, Owor BE, Bigogo G, Ochieng JB, Onyango C, Juma J, Mwenda J, Tabu C, Tate JE, Addo Y, Britton T, Parashar UD, Breiman RF, Verani JR, Nokes DJ.

Clin Infect Dis. 2019 Sep 23. pii: ciz912. doi: 10.1093/cid/ciz912. [Epub ahead of print]

PMID:
31544211
2.

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors.

Kiti MC, Melegaro A, Cattuto C, Nokes DJ.

Version 2. Wellcome Open Res. 2019 Aug 22 [revised 2019 Jan 1];4:84. doi: 10.12688/wellcomeopenres.15268.2. eCollection 2019.

3.

Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016.

Oketch JW, Kamau E, Otieno GP, Otieno JR, Agoti CN, Nokes DJ.

BMC Infect Dis. 2019 Aug 30;19(1):757. doi: 10.1186/s12879-019-4381-9.

4.

Effectiveness of monovalent rotavirus vaccine against hospitalization with acute rotavirus gastroenteritis in Kenyan children.

Khagayi S, Omore R, Otieno GP, Ogwel B, Ochieng JB, Juma J, Apondi E, Bigogo G, Onyango C, Ngama M, Njeru R, Owor BE, Mwanga MJ, Addo Y, Tabu C, Amwayi A, Mwenda JM, Tate JE, Parashar UD, Breiman RF, Nokes DJ, Verani JR.

Clin Infect Dis. 2019 Jul 20. pii: ciz664. doi: 10.1093/cid/ciz664. [Epub ahead of print]

PMID:
31326980
5.

Author Correction: Airway response to respiratory syncytial virus has incidental antibacterial effects.

Sande CJ, Njunge JM, Ngoi JM, Mutunga MN, Chege T, Gicheru ET, Gardiner EM, Gwela A, Green CA, Drysdale SB, Berkley JA, Nokes DJ, Pollard AJ.

Nat Commun. 2019 Jul 18;10(1):3291. doi: 10.1038/s41467-019-11222-9.

6.

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.

Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Sci Rep. 2019 Jul 11;9(1):10076. doi: 10.1038/s41598-019-46509-w.

7.

Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013.

Owor BE, Mwanga MJ, Njeru R, Mugo R, Ngama M, Otieno GP, Nokes DJ, Agoti CN.

Version 2. Wellcome Open Res. 2019 May 15 [revised 2019 Jan 1];3:150. doi: 10.12688/wellcomeopenres.14908.2. eCollection 2018.

8.

Airway response to respiratory syncytial virus has incidental antibacterial effects.

Sande CJ, Njunge JM, Mwongeli Ngoi J, Mutunga MN, Chege T, Gicheru ET, Gardiner EM, Gwela A, Green CA, Drysdale SB, Berkley JA, Nokes DJ, Pollard AJ.

Nat Commun. 2019 May 17;10(1):2218. doi: 10.1038/s41467-019-10222-z. Erratum in: Nat Commun. 2019 Jul 18;10(1):3291.

9.

Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance.

Morobe JM, Nyiro JU, Brand S, Kamau E, Gicheru E, Eyase F, Otieno GP, Munywoki PK, Agoti CN, Nokes DJ.

Version 2. Wellcome Open Res. 2019 Mar 27 [revised 2019 Jan 1];3:128. doi: 10.12688/wellcomeopenres.14836.2. eCollection 2018.

10.

Agreement between ELISA and plaque reduction neutralisation assay in Detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya.

Nyiro JU, Kiyuka PK, Mutunga MN, Sande CJ, Munywoki PK, Scott JAG, Nokes DJ.

Wellcome Open Res. 2019 Feb 18;4:33. doi: 10.12688/wellcomeopenres.15108.1. eCollection 2019.

11.

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.

Kamau E, Agoti CN, Ngoi JM, de Laurent ZR, Gitonga J, Cotten M, Phan MVT, Nokes DJ, Delwart E, Sanders E, Warimwe GM.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01566-18. doi: 10.1128/MRA.01566-18. eCollection 2019 Jan.

12.

Model-based estimates of transmission of respiratory syncytial virus within households.

Kombe IK, Munywoki PK, Baguelin M, Nokes DJ, Medley GF.

Epidemics. 2019 Jun;27:1-11. doi: 10.1016/j.epidem.2018.12.001. Epub 2018 Dec 15.

13.

An Intensive, Active Surveillance Reveals Continuous Invasion and High Diversity of Rhinovirus in Households.

Kamau E, Onyango CO, Otieno GP, Kiyuka PK, Agoti CN, Medley GF, Cane PA, Nokes DJ, Munywoki PK.

J Infect Dis. 2019 Mar 15;219(7):1049-1057. doi: 10.1093/infdis/jiy621.

14.

Evaluating the performance of tools used to call minority variants from whole genome short-read data.

Said Mohammed K, Kibinge N, Prins P, Agoti CN, Cotten M, Nokes DJ, Brand S, Githinji G.

Version 2. Wellcome Open Res. 2018 Sep 13 [revised 2018 Jan 1];3:21. doi: 10.12688/wellcomeopenres.13538.2. eCollection 2018.

15.

Erratum: Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.

Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter Š, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ.

Virus Evol. 2018 Nov 16;4(2):vey036. doi: 10.1093/ve/vey036. eCollection 2018 Jul.

16.

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.

Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter Š, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ.

Virus Evol. 2018 Sep 24;4(2):vey027. doi: 10.1093/ve/vey027. eCollection 2018 Jul. Erratum in: Virus Evol. 2018 Nov 16;4(2):vey036.

17.

Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics.

Sande CJ, Mutunga M, Muteti J, Berkley JA, Nokes DJ, Njunge J.

Sci Rep. 2018 Sep 14;8(1):13814. doi: 10.1038/s41598-018-32072-3.

18.

Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya: baseline epidemiological observations.

Nyiro JU, Munywoki P, Kamau E, Agoti C, Gichuki A, Etyang T, Otieno G, Nokes DJ.

Wellcome Open Res. 2018 Jul 25;3:89. doi: 10.12688/wellcomeopenres.14662.1. eCollection 2018.

19.

Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children.

Morpeth SC, Munywoki P, Hammitt LL, Bett A, Bottomley C, Onyango CO, Murdoch DR, Nokes DJ, Scott JAG.

Sci Rep. 2018 Jul 23;8(1):11030. doi: 10.1038/s41598-018-29119-w.

20.

Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya.

Kiyuka PK, Agoti CN, Munywoki PK, Njeru R, Bett A, Otieno JR, Otieno GP, Kamau E, Clark TG, van der Hoek L, Kellam P, Nokes DJ, Cotten M.

J Infect Dis. 2018 May 5;217(11):1728-1739. doi: 10.1093/infdis/jiy098.

21.

Continuous Invasion by Respiratory Viruses Observed in Rural Households During a Respiratory Syncytial Virus Seasonal Outbreak in Coastal Kenya.

Munywoki PK, Koech DC, Agoti CN, Cane PA, Medley GF, Nokes DJ.

Clin Infect Dis. 2018 Oct 30;67(10):1559-1567. doi: 10.1093/cid/ciy313.

22.

Global respiratory syncytial virus-associated mortality in young children (RSV GOLD): a retrospective case series.

Scheltema NM, Gentile A, Lucion F, Nokes DJ, Munywoki PK, Madhi SA, Groome MJ, Cohen C, Moyes J, Thorburn K, Thamthitiwat S, Oshitani H, Lupisan SP, Gordon A, Sánchez JF, O'Brien KL; PERCH Study Group, Gessner BD, Sutanto A, Mejias A, Ramilo O, Khuri-Bulos N, Halasa N, de-Paris F, Pires MR, Spaeder MC, Paes BA, Simões EAF, Leung TF, da Costa Oliveira MT, de Freitas Lázaro Emediato CC, Bassat Q, Butt W, Chi H, Aamir UB, Ali A, Lucero MG, Fasce RA, Lopez O, Rath BA, Polack FP, Papenburg J, Roglić S, Ito H, Goka EA, Grobbee DE, Nair H, Bont LJ.

Lancet Glob Health. 2017 Oct;5(10):e984-e991. doi: 10.1016/S2214-109X(17)30344-3. Erratum in: Lancet Glob Health. 2017 Dec;5(12 ):e1190.

23.

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks.

Githinji G, Agoti C, Munywoki P, Bett A, Kellam P, Cotton M, Nokes DJ.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.026. doi: 10.1093/ve/vew036.026. eCollection 2017 Mar. No abstract available.

24.

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.

Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotton M, Nokes DJ.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.025. doi: 10.1093/ve/vew036.025. eCollection 2017 Mar. No abstract available.

25.

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya.

Otieno JR, Agoti CN, Gitahi CW, Bett A, Ngama M, Medley GF, Cane PA, Nokes DJ.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.048. doi: 10.1093/ve/vew036.048. eCollection 2017 Mar. No abstract available.

26.

Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study.

Shi T, McAllister DA, O'Brien KL, Simoes EAF, Madhi SA, Gessner BD, Polack FP, Balsells E, Acacio S, Aguayo C, Alassani I, Ali A, Antonio M, Awasthi S, Awori JO, Azziz-Baumgartner E, Baggett HC, Baillie VL, Balmaseda A, Barahona A, Basnet S, Bassat Q, Basualdo W, Bigogo G, Bont L, Breiman RF, Brooks WA, Broor S, Bruce N, Bruden D, Buchy P, Campbell S, Carosone-Link P, Chadha M, Chipeta J, Chou M, Clara W, Cohen C, de Cuellar E, Dang DA, Dash-Yandag B, Deloria-Knoll M, Dherani M, Eap T, Ebruke BE, Echavarria M, de Freitas Lázaro Emediato CC, Fasce RA, Feikin DR, Feng L, Gentile A, Gordon A, Goswami D, Goyet S, Groome M, Halasa N, Hirve S, Homaira N, Howie SRC, Jara J, Jroundi I, Kartasasmita CB, Khuri-Bulos N, Kotloff KL, Krishnan A, Libster R, Lopez O, Lucero MG, Lucion F, Lupisan SP, Marcone DN, McCracken JP, Mejia M, Moisi JC, Montgomery JM, Moore DP, Moraleda C, Moyes J, Munywoki P, Mutyara K, Nicol MP, Nokes DJ, Nymadawa P, da Costa Oliveira MT, Oshitani H, Pandey N, Paranhos-Baccalà G, Phillips LN, Picot VS, Rahman M, Rakoto-Andrianarivelo M, Rasmussen ZA, Rath BA, Robinson A, Romero C, Russomando G, Salimi V, Sawatwong P, Scheltema N, Schweiger B, Scott JAG, Seidenberg P, Shen K, Singleton R, Sotomayor V, Strand TA, Sutanto A, Sylla M, Tapia MD, Thamthitiwat S, Thomas ED, Tokarz R, Turner C, Venter M, Waicharoen S, Wang J, Watthanaworawit W, Yoshida LM, Yu H, Zar HJ, Campbell H, Nair H; RSV Global Epidemiology Network.

Lancet. 2017 Sep 2;390(10098):946-958. doi: 10.1016/S0140-6736(17)30938-8. Epub 2017 Jul 7. Review.

27.

Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine: a modelling study based on data from PCV10 introduction in Kilifi, Kenya.

Flasche S, Ojal J, Le Polain de Waroux O, Otiende M, O'Brien KL, Kiti M, Nokes DJ, Edmunds WJ, Scott JAG.

BMC Med. 2017 Jun 7;15(1):113. doi: 10.1186/s12916-017-0882-9.

28.

Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya.

Nyiro JU, Kombe IK, Sande CJ, Kipkoech J, Kiyuka PK, Onyango CO, Munywoki PK, Kinyanjui TM, Nokes DJ.

PLoS One. 2017 May 22;12(5):e0177803. doi: 10.1371/journal.pone.0177803. eCollection 2017.

29.

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.

Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Virus Evol. 2017 Mar 11;3(1):vex006. doi: 10.1093/ve/vex006. eCollection 2017 Jan.

30.

Mortality after Inpatient Treatment for Severe Pneumonia in Children: a Cohort Study.

Ngari MM, Fegan G, Mwangome MK, Ngama MJ, Mturi N, Scott JAG, Bauni E, Nokes DJ, Berkley JA.

Paediatr Perinat Epidemiol. 2017 May;31(3):233-242. doi: 10.1111/ppe.12348. Epub 2017 Mar 20.

31.

Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR.

Kamau E, Agoti CN, Lewa CS, Oketch J, Owor BE, Otieno GP, Bett A, Cane PA, Nokes DJ.

J Clin Virol. 2017 Mar;88:21-25. doi: 10.1016/j.jcv.2016.12.011. Epub 2017 Jan 5.

32.

Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015.

Otieno JR, Kamau EM, Agoti CN, Lewa C, Otieno G, Bett A, Ngama M, Cane PA, Nokes DJ.

Emerg Infect Dis. 2017 Feb;23(2):264-271. doi: 10.3201/eid2302.161149.

33.

Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study.

Wathuo M, Medley GF, Nokes DJ, Munywoki PK.

Wellcome Open Res. 2016 Dec 14;1(27):27. doi: 10.12688/wellcomeopenres.10284.2.

34.

Predicting the relative impacts of maternal and neonatal respiratory syncytial virus (RSV) vaccine target product profiles: A consensus modelling approach.

Pan-Ngum W, Kinyanjui T, Kiti M, Taylor S, Toussaint JF, Saralamba S, Van Effelterre T, Nokes DJ, White LJ.

Vaccine. 2017 Jan 5;35(2):403-409. doi: 10.1016/j.vaccine.2016.10.073. Epub 2016 Nov 30.

35.

Absence of Association between Cord Specific Antibody Levels and Severe Respiratory Syncytial Virus (RSV) Disease in Early Infants: A Case Control Study from Coastal Kenya.

Nyiro JU, Sande CJ, Mutunga M, Kiyuka PK, Munywoki PK, Scott JA, Nokes DJ.

PLoS One. 2016 Nov 16;11(11):e0166706. doi: 10.1371/journal.pone.0166706. eCollection 2016.

36.

Cohort Profile: The Kilifi Vaccine Monitoring Study.

Adetifa IMO, Bwanaali T, Wafula J, Mutuku A, Karia B, Makumi A, Mwatsuma P, Bauni E, Hammitt LL, Nokes DJ, Maree E, Tabu C, Kamau T, Mataza C, Williams TN, Scott JAG.

Int J Epidemiol. 2017 Jun 1;46(3):792-792h. doi: 10.1093/ije/dyw202. No abstract available.

37.

Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors.

Kiti MC, Tizzoni M, Kinyanjui TM, Koech DC, Munywoki PK, Meriac M, Cappa L, Panisson A, Barrat A, Cattuto C, Nokes DJ.

EPJ Data Sci. 2016;5:21. doi: 10.1140/epjds/s13688-016-0084-2. Epub 2016 Jun 14.

38.

Human Rhinovirus B and C Genomes from Rural Coastal Kenya.

Agoti CN, Kiyuka PK, Kamau E, Munywoki PK, Bett A, van der Hoek L, Kellam P, Nokes DJ, Cotten M.

Genome Announc. 2016 Jul 28;4(4). pii: e00751-16. doi: 10.1128/genomeA.00751-16.

39.

Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11.

Owor BE, Masankwa GN, Mwango LC, Njeru RW, Agoti CN, Nokes DJ.

BMC Infect Dis. 2016 Jun 17;16:301. doi: 10.1186/s12879-016-1605-0.

40.

Influenza activity in Kenya, 2007-2013: timing, association with climatic factors, and implications for vaccination campaigns.

Emukule GO, Mott JA, Spreeuwenberg P, Viboud C, Commanday A, Muthoka P, Munywoki PK, Nokes DJ, van der Velden K, Paget JW.

Influenza Other Respir Viruses. 2016 Sep;10(5):375-85. doi: 10.1111/irv.12393. Epub 2016 May 27.

41.

Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya.

Otieno JR, Agoti CN, Gitahi CW, Bett A, Ngama M, Medley GF, Cane PA, Nokes DJ.

J Virol. 2016 Apr 29;90(10):4990-5002. doi: 10.1128/JVI.03105-15. Print 2016 May 15.

42.

Infectious disease and health systems modelling for local decision making to control neglected tropical diseases.

Hollingsworth TD, Langley I, Nokes DJ, Macpherson EE, McGivern G, Adams ER, Bockarie MJ, Mortimer K, Reimer LJ, Squire B, Torr SJ, Medley GF.

BMC Proc. 2015 Dec 18;9(Suppl 10):S6. doi: 10.1186/1753-6561-9-S10-S6. eCollection 2015.

43.

Vaccine Induced Herd Immunity for Control of Respiratory Syncytial Virus Disease in a Low-Income Country Setting.

Kinyanjui TM, House TA, Kiti MC, Cane PA, Nokes DJ, Medley GF.

PLoS One. 2015 Sep 21;10(9):e0138018. doi: 10.1371/journal.pone.0138018. eCollection 2015.

44.

Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence.

Agoti CN, Otieno JR, Ngama M, Mwihuri AG, Medley GF, Cane PA, Nokes DJ.

J Virol. 2015 Nov;89(22):11630-42. doi: 10.1128/JVI.01972-15. Epub 2015 Sep 9.

45.

Frequent Asymptomatic Respiratory Syncytial Virus Infections During an Epidemic in a Rural Kenyan Household Cohort.

Munywoki PK, Koech DC, Agoti CN, Bett A, Cane PA, Medley GF, Nokes DJ.

J Infect Dis. 2015 Dec 1;212(11):1711-8. doi: 10.1093/infdis/jiv263. Epub 2015 May 4.

46.

Quantifying maternally derived respiratory syncytial virus specific neutralising antibodies in a birth cohort from coastal Kenya.

Nyiro JU, Sande C, Mutunga M, Kiyuka PK, Munywoki PK, Scott JA, Nokes DJ.

Vaccine. 2015 Apr 8;33(15):1797-801. doi: 10.1016/j.vaccine.2015.02.039. Epub 2015 Feb 26.

47.

Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing.

Agoti CN, Otieno JR, Munywoki PK, Mwihuri AG, Cane PA, Nokes DJ, Kellam P, Cotten M.

J Virol. 2015 Apr;89(7):3444-54. doi: 10.1128/JVI.03391-14. Epub 2015 Jan 21.

48.

Quantifying age-related rates of social contact using diaries in a rural coastal population of Kenya.

Kiti MC, Kinyanjui TM, Koech DC, Munywoki PK, Medley GF, Nokes DJ.

PLoS One. 2014 Aug 15;9(8):e104786. doi: 10.1371/journal.pone.0104786. eCollection 2014.

49.

The association between age and the development of respiratory syncytial virus neutralising antibody responses following natural infection in infants.

Sande CJ, Cane PA, Nokes DJ.

Vaccine. 2014 Aug 20;32(37):4726-9. doi: 10.1016/j.vaccine.2014.05.038. Epub 2014 Jul 6.

50.

Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding.

Munywoki PK, Koech DC, Agoti CN, Kibirige N, Kipkoech J, Cane PA, Medley GF, Nokes DJ.

Epidemiol Infect. 2015 Mar;143(4):804-12. doi: 10.1017/S0950268814001393. Epub 2014 Jun 5.

Supplemental Content

Loading ...
Support Center