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Items: 1 to 50 of 65

1.

Evidence for late Pleistocene origin of Astyanax mexicanus cavefish.

Fumey J, Hinaux H, Noirot C, Thermes C, Rétaux S, Casane D.

BMC Evol Biol. 2018 Apr 18;18(1):43. doi: 10.1186/s12862-018-1156-7.

2.

A comparative transcriptomic approach to understanding the formation of cork.

Boher P, Soler M, Sánchez A, Hoede C, Noirot C, Paiva JAP, Serra O, Figueras M.

Plant Mol Biol. 2018 Jan;96(1-2):103-118. doi: 10.1007/s11103-017-0682-9. Epub 2017 Nov 15.

PMID:
29143299
3.

Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001.

Caldelari I, Chane-Woon-Ming B, Noirot C, Moreau K, Romby P, Gaspin C, Marzi S.

Genome Announc. 2017 Aug 10;5(32). pii: e00783-17. doi: 10.1128/genomeA.00783-17.

4.

Whole blood transcriptome analysis reveals potential competition in metabolic pathways between negative energy balance and response to inflammatory challenge.

Bouvier-Muller J, Allain C, Tabouret G, Enjalbert F, Portes D, Noirot C, Rupp R, Foucras G.

Sci Rep. 2017 May 24;7(1):2379. doi: 10.1038/s41598-017-02391-y.

5.

Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula.

Satgé C, Moreau S, Sallet E, Lefort G, Auriac MC, Remblière C, Cottret L, Gallardo K, Noirot C, Jardinaud MF, Gamas P.

Nat Plants. 2016 Oct 31;2(11):16166. doi: 10.1038/nplants.2016.166.

PMID:
27797357
6.

Sequencing and characterization of a multi-organ Arctic charr transcriptome: A toolbox for investigating polymorphism and seasonal life in a high Arctic fish.

Magnanou E, Noirot C, Falcón J, Jørgensen EH.

Mar Genomics. 2016 Oct;29:45-53. doi: 10.1016/j.margen.2016.04.006. Epub 2016 Apr 22.

PMID:
27118202
7.

Whole-exome sequencing in osteosarcoma reveals important heterogeneity of genetic alterations.

Bousquet M, Noirot C, Accadbled F, Sales de Gauzy J, Castex MP, Brousset P, Gomez-Brouchet A.

Ann Oncol. 2016 Apr;27(4):738-44. doi: 10.1093/annonc/mdw009. Epub 2016 Jan 19.

PMID:
26787232
8.

Jflow: a workflow management system for web applications.

Mariette J, Escudié F, Bardou P, Nabihoudine I, Noirot C, Trotard MS, Gaspin C, Klopp C.

Bioinformatics. 2016 Feb 1;32(3):456-8. doi: 10.1093/bioinformatics/btv589. Epub 2015 Oct 10.

9.

RNA editing in acute myeloid leukaemia with normal karyotype.

Quelen C, Eloit Y, Noirot C, Bousquet M, Brousset P.

Br J Haematol. 2016 Jun;173(5):788-90. doi: 10.1111/bjh.13631. Epub 2015 Aug 7. No abstract available.

PMID:
26251186
10.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

11.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release.

Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, Quesneville H, Stierschneider M, Fluch S, Feldhahn L, Tarkka M, Herrmann S, Buscot F, Klopp C, Kremer A, Salse J, Aury JM, Plomion C.

BMC Genomics. 2015 Feb 21;16:112. doi: 10.1186/s12864-015-1331-9.

12.

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation.

Lesur I, Bechade A, Lalanne C, Klopp C, Noirot C, Leplé JC, Kremer A, Plomion C, Le Provost G.

Mol Ecol Resour. 2015 Sep;15(5):1192-204. doi: 10.1111/1755-0998.12373. Epub 2015 Jan 30.

PMID:
25594128
13.

De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species.

Bouzid W, Verdenaud M, Klopp C, Ducancel F, Noirot C, Vétillard A.

BMC Genomics. 2014 Nov 18;15:987. doi: 10.1186/1471-2164-15-987.

14.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

15.

RNAbrowse: RNA-Seq de novo assembly results browser.

Mariette J, Noirot C, Nabihoudine I, Bardou P, Hoede C, Djari A, Cabau C, Klopp C.

PLoS One. 2014 May 13;9(5):e96821. doi: 10.1371/journal.pone.0096821. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106187.

16.

Generation and characterization of the sea bass Dicentrarchus labrax brain and liver transcriptomes.

Magnanou E, Klopp C, Noirot C, Besseau L, Falcón J.

Gene. 2014 Jul 1;544(1):56-66. doi: 10.1016/j.gene.2014.04.032. Epub 2014 Apr 21.

PMID:
24768179
17.

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM.

Plant Biotechnol J. 2014 Apr;12(3):286-99. doi: 10.1111/pbi.12136. Epub 2013 Nov 21.

18.

Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics.

Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, Henrissat B, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O'Donohue M.

Biotechnol Biofuels. 2013 May 14;6(1):78. doi: 10.1186/1754-6834-6-78.

19.

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination.

Chancerel E, Lamy JB, Lesur I, Noirot C, Klopp C, Ehrenmann F, Boury C, Provost GL, Label P, Lalanne C, Léger V, Salin F, Gion JM, Plomion C.

BMC Biol. 2013 Apr 18;11:50. doi: 10.1186/1741-7007-11-50.

20.

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing.

Ueno S, Klopp C, Leplé JC, Derory J, Noirot C, Léger V, Prince E, Kremer A, Plomion C, Le Provost G.

BMC Genomics. 2013 Apr 10;14:236. doi: 10.1186/1471-2164-14-236.

21.

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes.

Hinaux H, Poulain J, Da Silva C, Noirot C, Jeffery WR, Casane D, Rétaux S.

PLoS One. 2013;8(1):e53553. doi: 10.1371/journal.pone.0053553. Epub 2013 Jan 9.

22.

NG6: Integrated next generation sequencing storage and processing environment.

Mariette J, Escudié F, Allias N, Salin G, Noirot C, Thomas S, Klopp C.

BMC Genomics. 2012 Sep 9;13:462.

23.

Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress.

Bouétard A, Noirot C, Besnard AL, Bouchez O, Choisne D, Robe E, Klopp C, Lagadic L, Coutellec MA.

Ecotoxicology. 2012 Nov;21(8):2222-34. doi: 10.1007/s10646-012-0977-1. Epub 2012 Jul 20.

PMID:
22814884
24.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

25.

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus.

Villar E, Klopp C, Noirot C, Novaes E, Kirst M, Plomion C, Gion JM.

BMC Genomics. 2011 Nov 2;12:538. doi: 10.1186/1471-2164-12-538.

26.

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool.

Jérôme M, Noirot C, Klopp C.

BMC Res Notes. 2011 May 26;4:149. doi: 10.1186/1756-0500-4-149.

27.

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, Barré A, de Daruvar A, Couloux A, Wincker P, Reviron MP, Kremer A, Plomion C.

BMC Genomics. 2010 Nov 23;11:650. doi: 10.1186/1471-2164-11-650.

28.

Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing.

Leroux S, Feve K, Vignoles F, Bouchez O, Klopp C, Noirot C, Gourichon D, Richard S, Leterrier C, Beaumont C, Minvielle F, Vignal A, Pitel F.

BMC Res Notes. 2010 Jul 28;3:214. doi: 10.1186/1756-0500-3-214.

29.

Wheat-germ cell-free production of prion proteins for solid-state NMR structural studies.

Noirot C, Habenstein B, Bousset L, Melki R, Meier BH, Endo Y, Penin F, Böckmann A.

N Biotechnol. 2011 Apr 30;28(3):232-8. doi: 10.1016/j.nbt.2010.06.016. Epub 2010 Jul 4.

PMID:
20609396
30.

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation.

Geissmann T, Chevalier C, Cros MJ, Boisset S, Fechter P, Noirot C, Schrenzel J, François P, Vandenesch F, Gaspin C, Romby P.

Nucleic Acids Res. 2009 Nov;37(21):7239-57. doi: 10.1093/nar/gkp668.

31.

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

BioMoby Consortium, Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano M, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.

Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31. Review.

PMID:
18238804
32.

LeARN: a platform for detecting, clustering and annotating non-coding RNAs.

Noirot C, Gaspin C, Schiex T, Gouzy J.

BMC Bioinformatics. 2008 Jan 14;9:21. doi: 10.1186/1471-2105-9-21.

33.

Allergic sensitization and clinical reactions to latex, food and pollen in adult patients.

Levy DA, Mounedji N, Noirot C, Leynadier F.

Clin Exp Allergy. 2000 Feb;30(2):270-5.

PMID:
10651781
34.

Decreased skin response to intradermal platelet-activating factor (PAF-acether) in cancer patients.

Burtin C, Noirot C, Scheinmann P, Paupe J, Benveniste J.

J Allergy Clin Immunol. 1990 Sep;86(3 Pt 1):418-9. No abstract available.

PMID:
2212415
35.

Comparison between number of basophils, blood histamine, and histamine release in cancer and noncancer patients.

Galoppin L, Noirot C, Wastiaux JP, Scheinmann P, Paupe J, Burtin C.

J Allergy Clin Immunol. 1989 Oct;84(4 Pt 1):501-6.

PMID:
2477430
36.

Antitumour activity of histamine plus H2-receptor antagonist.

Burtin C, Noirot C, Scheinmann P.

Lancet. 1988 Dec 10;2(8624):1369. No abstract available.

PMID:
2904087
37.

Clinical improvement in advanced cancer disease after treatment combining histamine and H2-antihistaminics (ranitidine or cimetidine).

Burtin C, Noirot C, Scheinmann P, Galoppin L, Sabolovic D, Bernard P.

Eur J Cancer Clin Oncol. 1988 Feb;24(2):161-7.

PMID:
3356203
38.

Ergatoid reproductives in Nasutitermes columbicus (Isoptera, Termitidae).

Noirot C, Thorne BL.

J Morphol. 1988 Jan;195(1):83-93. doi: 10.1002/jmor.1051950108.

PMID:
29879794
39.

Decreased skin response to intradermal histamine in cancer patients.

Burtin C, Noirot C, Giroux C, Scheinmann P.

J Allergy Clin Immunol. 1986 Jul;78(1 Pt 1):83-9.

PMID:
3722637
40.

[Bronchial provocation tests in the normal subject].

Noirot C, Leguay G, Seigneuric A.

Allerg Immunol (Paris). 1986 Jun;18(6):25-9. French. No abstract available.

PMID:
3453719
41.

[How to define the normal level of serum IgE in adults?].

Laurent J, Noirot C, Ansquer JC, Laurent G, Kestenbaum S, Lagrue G.

Ann Med Interne (Paris). 1985;136(5):419-22. French.

PMID:
4062142
42.

[Sensitization by repeated skin tests with candidin and PHA].

Leynadier F, Jousset D, Noirot C, Bouderlique JR, Dry J.

Pathol Biol (Paris). 1984 Nov;32(9):954-8. French.

PMID:
6504572
43.

Is house dust allergen a possible causal factor for relapses in lipoid nephrosis?

Laurent J, Lagrue G, Belghiti D, Noirot C, Hirbec G.

Allergy. 1984 Apr;39(3):231-6.

PMID:
6711772
44.

Serum IgE in primary glomerular diseases.

Lagrue G, Laurent J, Hirbec G, Ansquer JC, Noirot C, Laurent G, Nebout T, Kestenbaum S.

Nephron. 1984;36(1):5-9.

PMID:
6691002
45.

Isolation and characterization of invertebrate smooth septate junctions.

Green CR, Noirot-Timothée C, Noirot C.

J Cell Sci. 1983 Jul;62:351-70.

46.

[How to define and interpret elevated serum IgE?].

Laurent J, Lagrue G, Kestenbaum S, Noirot C, Ansquer JC.

Presse Med. 1983 Apr 16;12(17):1081. French. No abstract available.

PMID:
6221279
47.

Decreased blood histamine levels in patients with solid malignant tumours.

Burtin C, Noirot C, Paupe J, Scheinmann P.

Br J Cancer. 1983 Mar;47(3):367-72.

48.

Basophil sensitisation in idiopathic nephrotic syndrome.

Pirotzky E, Hieblot C, Benveniste J, Laurent J, Lagrue G, Noirot C.

Lancet. 1982 Feb 13;1(8268):358-61.

PMID:
6120348
49.

The specialization of septate junctions in regions of tricellular junctions. II. Pleated septate junctions.

Noirot-Timothée C, Graf F, Noirot C.

J Ultrastruct Res. 1982 Feb;78(2):152-65. No abstract available.

PMID:
7086933
50.

The specialization of septate junctions in regions of tricellular junctions. I. Smooth septate junctions (=continuous junctions).

Graf F, Noirot-Timothée C, Noirot C.

J Ultrastruct Res. 1982 Feb;78(2):136-51. No abstract available.

PMID:
7086932

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