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Items: 47

1.

Cell competition corrects noisy Wnt morphogen gradients to achieve robust patterning in the zebrafish embryo.

Akieda Y, Ogamino S, Furuie H, Ishitani S, Akiyoshi R, Nogami J, Masuda T, Shimizu N, Ohkawa Y, Ishitani T.

Nat Commun. 2019 Oct 17;10(1):4710. doi: 10.1038/s41467-019-12609-4.

2.

The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis.

Abdalla MOA, Yamamoto T, Maehara K, Nogami J, Ohkawa Y, Miura H, Poonperm R, Hiratani I, Nakayama H, Nakao M, Saitoh N.

Nat Commun. 2019 Aug 22;10(1):3778. doi: 10.1038/s41467-019-11378-4.

3.

Biochemical analysis of nucleosome targeting by Tn5 transposase.

Sato S, Arimura Y, Kujirai T, Harada A, Maehara K, Nogami J, Ohkawa Y, Kurumizaka H.

Open Biol. 2019 Aug 30;9(8):190116. doi: 10.1098/rsob.190116. Epub 2019 Aug 14.

4.

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme.

Witwicka H, Nogami J, Syed SA, Maehara K, Padilla-Benavides T, Ohkawa Y, Imbalzano AN.

Mol Cell Biol. 2019 Sep 11;39(19). pii: e00063-19. doi: 10.1128/MCB.00063-19. Print 2019 Oct 1.

5.

Synthesis of a Strained Spherical Carbon Nanocage by Regioselective Alkyne Cyclotrimerization.

Hayase N, Nogami J, Shibata Y, Tanaka K.

Angew Chem Int Ed Engl. 2019 Jul 8;58(28):9439-9442. doi: 10.1002/anie.201903422. Epub 2019 Jun 6.

PMID:
31066134
6.

Locomotor Training Increases Synaptic Structure With High NGL-2 Expression After Spinal Cord Hemisection.

Kobayakawa K, DePetro KA, Zhong H, Pham B, Hara M, Harada A, Nogami J, Ohkawa Y, Edgerton VR.

Neurorehabil Neural Repair. 2019 Mar;33(3):225-231. doi: 10.1177/1545968319829456. Epub 2019 Feb 19.

PMID:
30782076
7.

Cell-autonomous and redundant roles of Hey1 and HeyL in muscle stem cells: HeyL requires Hes1 to bind diverse DNA sites.

Noguchi YT, Nakamura M, Hino N, Nogami J, Tsuji S, Sato T, Zhang L, Tsujikawa K, Tanaka T, Izawa K, Okada Y, Doi T, Kokubo H, Harada A, Uezumi A, Gessler M, Ohkawa Y, Fukada SI.

Development. 2019 Feb 20;146(4). pii: dev163618. doi: 10.1242/dev.163618.

8.

A chromatin integration labelling method enables epigenomic profiling with lower input.

Harada A, Maehara K, Handa T, Arimura Y, Nogami J, Hayashi-Takanaka Y, Shirahige K, Kurumizaka H, Kimura H, Ohkawa Y.

Nat Cell Biol. 2019 Feb;21(2):287-296. doi: 10.1038/s41556-018-0248-3. Epub 2018 Dec 10.

PMID:
30532068
9.

Identification of Tetramers in Silver Films Grown on the Si(001) Surface at Room Temperature.

Huang K, Huxter WS, Singh CV, Nogami J.

J Phys Chem Lett. 2018 Nov 1;9(21):6275-6279. doi: 10.1021/acs.jpclett.8b02746. Epub 2018 Oct 19.

PMID:
30339031
10.

MNase, as a probe to study the sequence-dependent site exposures in the +1 nucleosomes of yeast.

Luo D, Kato D, Nogami J, Ohkawa Y, Kurumizaka H, Kono H.

Nucleic Acids Res. 2018 Aug 21;46(14):7124-7137. doi: 10.1093/nar/gky502.

11.

Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration.

Harada A, Maehara K, Ono Y, Taguchi H, Yoshioka K, Kitajima Y, Xie Y, Sato Y, Iwasaki T, Nogami J, Okada S, Komatsu T, Semba Y, Takemoto T, Kimura H, Kurumizaka H, Ohkawa Y.

Nat Commun. 2018 Apr 11;9(1):1400. doi: 10.1038/s41467-018-03845-1.

12.

Direct Reprogramming of Spiral Ganglion Non-neuronal Cells into Neurons: Toward Ameliorating Sensorineural Hearing Loss by Gene Therapy.

Noda T, Meas SJ, Nogami J, Amemiya Y, Uchi R, Ohkawa Y, Nishimura K, Dabdoub A.

Front Cell Dev Biol. 2018 Feb 14;6:16. doi: 10.3389/fcell.2018.00016. eCollection 2018.

13.

The requirement of Mettl3-promoted MyoD mRNA maintenance in proliferative myoblasts for skeletal muscle differentiation.

Kudou K, Komatsu T, Nogami J, Maehara K, Harada A, Saeki H, Oki E, Maehara Y, Ohkawa Y.

Open Biol. 2017 Sep;7(9). pii: 170119. doi: 10.1098/rsob.170119.

14.

Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells.

Semba Y, Harada A, Maehara K, Oki S, Meno C, Ueda J, Yamagata K, Suzuki A, Onimaru M, Nogami J, Okada S, Akashi K, Ohkawa Y.

Nucleic Acids Res. 2017 Sep 6;45(15):8758-8772. doi: 10.1093/nar/gkx475.

15.

Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.

Kato D, Osakabe A, Arimura Y, Mizukami Y, Horikoshi N, Saikusa K, Akashi S, Nishimura Y, Park SY, Nogami J, Maehara K, Ohkawa Y, Matsumoto A, Kono H, Inoue R, Sugiyama M, Kurumizaka H.

Science. 2017 Apr 14;356(6334):205-208. doi: 10.1126/science.aak9867.

PMID:
28408607
16.

Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8.

Taguchi H, Xie Y, Horikoshi N, Maehara K, Harada A, Nogami J, Sato K, Arimura Y, Osakabe A, Kujirai T, Iwasaki T, Semba Y, Tachibana T, Kimura H, Ohkawa Y, Kurumizaka H.

Biochemistry. 2017 Apr 25;56(16):2184-2196. doi: 10.1021/acs.biochem.6b01098. Epub 2017 Apr 10.

PMID:
28374988
17.

Thymine DNA glycosylase modulates DNA damage response and gene expression by base excision repair-dependent and independent mechanisms.

Nakamura T, Murakami K, Tada H, Uehara Y, Nogami J, Maehara K, Ohkawa Y, Saitoh H, Nishitani H, Ono T, Nishi R, Yokoi M, Sakai W, Sugasawa K.

Genes Cells. 2017 Apr;22(4):392-405. doi: 10.1111/gtc.12481. Epub 2017 Mar 20.

18.

Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis.

Ueda J, Harada A, Urahama T, Machida S, Maehara K, Hada M, Makino Y, Nogami J, Horikoshi N, Osakabe A, Taguchi H, Tanaka H, Tachiwana H, Yao T, Yamada M, Iwamoto T, Isotani A, Ikawa M, Tachibana T, Okada Y, Kimura H, Ohkawa Y, Kurumizaka H, Yamagata K.

Cell Rep. 2017 Jan 17;18(3):593-600. doi: 10.1016/j.celrep.2016.12.065.

19.

Controlling the width of self-assembled dysprosium silicide nanowires on the Si(001) surface.

Cui Y, Chung J, Nogami J.

J Phys Condens Matter. 2012 Feb 1;24(4):045003. doi: 10.1088/0953-8984/24/4/045003. Epub 2012 Jan 5.

PMID:
22218732
20.

Defining nanoscale metal features on an atomically clean silicon surface with a stencil.

Linklater A, Nogami J.

Nanotechnology. 2008 Jul 16;19(28):285302. doi: 10.1088/0957-4484/19/28/285302. Epub 2008 Jun 2.

PMID:
21828730
21.

[Effect of roxithromycin on cytokine production by peripheral monocytes derived from patients with bronchial asthma].

Nakahara H, Higashida A, Nogami J, Iwanaga K, Ueshima H, Sawaguchi H, Haraguchi R, Muraki M, Kubo Y, Nagasaka Y, Nakajima S.

Jpn J Antibiot. 1997 Mar;50 Suppl A:113-5. Japanese. No abstract available.

PMID:
9597459
22.

Surface unwetting during growth of Ag on Si(001).

Glueckstein JC, Evans MM, Nogami J.

Phys Rev B Condens Matter. 1996 Oct 15;54(16):R11066-R11069. No abstract available.

PMID:
9984987
23.

Epitaxial growth of manganese on silicon: Volmer-Weber growth on the Si(111) surface.

Evans MM, Glueckstein JC, Nogami J.

Phys Rev B Condens Matter. 1996 Feb 15;53(7):4000-4004. No abstract available.

PMID:
9983954
24.

Surface reconstructions in the Ag/Si(001) system.

Lin XF, Wan KJ, Nogami J.

Phys Rev B Condens Matter. 1994 Mar 15;49(11):7385-7393. No abstract available.

PMID:
10009476
25.

Bi on Si(111): Two phases of the sqrt 3 x sqrt 3 surface reconstruction.

Shioda R, Kawazu A, Baski AA, Quate CF, Nogami J.

Phys Rev B Condens Matter. 1993 Aug 15;48(7):4895-4898. No abstract available.

PMID:
10008986
26.

Surface reconstructions in the Ag/Si(111) system.

Wan KJ, Lin XF, Nogami J.

Phys Rev B Condens Matter. 1993 May 15;47(20):13700-13712. No abstract available.

PMID:
10005687
27.

Ag on the Si(001) surface: Growth of the first monolayer at room temperature.

Lin XF, Wan KJ, Nogami J.

Phys Rev B Condens Matter. 1993 May 15;47(20):13491-13497. No abstract available.

PMID:
10005659
28.

Ag on Si(001): Growth behavior of the annealed surface.

Lin XF, Wan KJ, Nogami J.

Phys Rev B Condens Matter. 1993 Apr 15;47(16):10947-10950. No abstract available.

PMID:
10005225
29.

Adsorption-site determination of ordered Yb on Si(111) surfaces.

Wigren C, Andersen JN, Nyholm R, Karlsson UO, Nogami J, Baski AA, Quate CF.

Phys Rev B Condens Matter. 1993 Apr 15;47(15):9663-9668. No abstract available.

PMID:
10005036
30.

Gold-induced reconstructions of the Si(001) surface: The 5 x 3 and sqrt 26 x 3 phases.

Lin XF, Wan KJ, Glueckstein JC, Nogami J.

Phys Rev B Condens Matter. 1993 Feb 15;47(7):3671-3676. No abstract available.

PMID:
10006468
31.

Comparison of the 3 x 1 reconstructions of the Si(111) surface induced by Li and Ag.

Wan KJ, Lin XF, Nogami J.

Phys Rev B Condens Matter. 1992 Nov 15;46(20):13635-13638. No abstract available.

PMID:
10003419
32.

Reexamination of the Ag/Si(111)- sqrt 3 x sqrt 3 surface by scanning tunneling microscopy.

Wan KJ, Lin XF, Nogami J.

Phys Rev B Condens Matter. 1992 Apr 15;45(16):9509-9512. No abstract available.

PMID:
10000833
33.

Tin-induced reconstructions of the Si(100) surface.

Baski AA, Quate CF, Nogami J.

Phys Rev B Condens Matter. 1991 Nov 15;44(20):11167-11177. No abstract available.

PMID:
9999237
34.

Aluminum on the Si(100) surface: Growth of the first monolayer.

Nogami J, Baski AA, Quate CF.

Phys Rev B Condens Matter. 1991 Jul 15;44(3):1415-1418. No abstract available.

PMID:
9999668
35.

Indium-induced reconstructions of the Si(100) surface.

Baski AA, Nogami J, Quate CF.

Phys Rev B Condens Matter. 1991 Apr 15;43(11):9316-9319. No abstract available.

PMID:
9996616
36.

Surface extended-x-ray-absorption fine structure and scanning tunneling microscopy of Si(001)2 x 1-Sb.

Richter M, Woicik JC, Nogami J, Pianetta P, Miyano KE, Baski AA, Kendelewicz T, Bouldin CE, Spicer WE, Quate CF, Lindau I I.

Phys Rev Lett. 1990 Dec 31;65(27):3417-3420. No abstract available.

PMID:
10042866
37.

sqrt 3 x sqrt 3 -->6 x 6 phase transition on the Au/Si(111) surface.

Nogami J, Baski AA, Quate CF.

Phys Rev Lett. 1990 Sep 24;65(13):1611-1614. No abstract available.

PMID:
10042314
38.

Si(111)-5 x 1-Au reconstruction as studied by scanning tunneling microscopy.

Baski AA, Nogami J, Quate CF.

Phys Rev B Condens Matter. 1990 May 15;41(14):10247-10249. No abstract available.

PMID:
9993426
39.

Epitaxial growth of Ag on Au(111) studied by scanning tunneling microscopy.

Dovek MM, Lang CA, Nogami J, Quate CF.

Phys Rev B Condens Matter. 1989 Dec 15;40(17):11973-11975. No abstract available.

PMID:
9991815
40.

The Origin of the Superstructure in Bi2Sr2CaCu2O8+dgr as Revealed by Scanning Tunneling Microscopy.

Kirk MD, Nogami J, Baski AA, Mitzi DB, Kapitulnik A, Geballe TH, Quate CF.

Science. 1988 Dec 23;242(4886):1673-5.

PMID:
17730577
41.

Chemical dependence of the multiple-tip effect in scanning tunneling microscopy.

Park Si, Nogami J, Mizes HA, Quate CF.

Phys Rev B Condens Matter. 1988 Aug 15;38(6):4269-4272. No abstract available.

PMID:
9946802
42.

Indium-induced reconstructions of the Si(111) surface studied by scanning tunneling microscopy.

Nogami J, Park Si, Quate CF.

Phys Rev B Condens Matter. 1987 Oct 15;36(11):6221-6224. No abstract available.

PMID:
9942323
43.

Effect of tip morphology on images obtained by scanning tunneling microscopy.

Park Si, Nogami J, Quate CF.

Phys Rev B Condens Matter. 1987 Aug 15;36(5):2863-2866. No abstract available.

PMID:
9943172
44.

Photoemission spectroscopy of Yb3Si5 and its connection with Si-Yb interfaces.

Abbati I I, Braicovich L, del Pennino U, Carbone C, Nogami J, Yeh JJ, Lindau I I, Iandelli A, Olcese GL, Palenzona A.

Phys Rev B Condens Matter. 1986 Sep 15;34(6):4150-4154. No abstract available.

PMID:
9940180
45.

Binding-energy shifts from alloying at metal-compound-semiconductor interfaces.

Nogami J, Kendelewicz T, Lindau I I, Spicer WE.

Phys Rev B Condens Matter. 1986 Jul 15;34(2):669-674. No abstract available.

PMID:
9939672
46.

Electronic structure of the Yb/Ge(111) interface.

Nogami J, Carbone C, Friedman DJ, Lindau I I.

Phys Rev B Condens Matter. 1986 Jan 15;33(2):864-872. No abstract available.

PMID:
9938345
47.

Solid-state effects in photoionization cross sections of d states: Comparison between MoS2 and Mo.

Abbati I I, Braicovich L, Carbone C, Nogami J, Yeh JJ, Lindau I I, del Pennino U.

Phys Rev B Condens Matter. 1985 Oct 15;32(8):5459-5461. No abstract available.

PMID:
9937770

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