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Items: 48

1.

Pseudomonas putida KT2440 metabolism undergoes sequential modifications during exponential growth in a complete medium as compounds are gradually consumed.

Molina L, Rosa R, Nogales J, Rojo F.

Environ Microbiol. 2019 Jul;21(7):2375-2390. doi: 10.1111/1462-2920.14622. Epub 2019 Apr 21.

PMID:
30951237
2.

Quantifying dynamic mechanisms of auto-regulation in Escherichia coli with synthetic promoter in response to varying external phosphate levels.

Uluşeker C, Torres-Bacete J, García JL, Hanczyc MM, Nogales J, Kahramanoğulları O.

Sci Rep. 2019 Feb 14;9(1):2076. doi: 10.1038/s41598-018-38223-w.

3.

FLYCOP: metabolic modeling-based analysis and engineering microbial communities.

García-Jiménez B, García JL, Nogales J.

Bioinformatics. 2018 Sep 1;34(17):i954-i963. doi: 10.1093/bioinformatics/bty561.

4.

2-Tridecanone impacts surface-associated bacterial behaviours and hinders plant-bacteria interactions.

López-Lara IM, Nogales J, Pech-Canul Á, Calatrava-Morales N, Bernabéu-Roda LM, Durán P, Cuéllar V, Olivares J, Alvarez L, Palenzuela-Bretones D, Romero M, Heeb S, Cámara M, Geiger O, Soto MJ.

Environ Microbiol. 2018 Jun;20(6):2049-2065. doi: 10.1111/1462-2920.14083. Epub 2018 Mar 30.

PMID:
29488306
5.

Multiple CsrA Proteins Control Key Virulence Traits in Pseudomonas syringae pv. tomato DC3000.

Ferreiro MD, Nogales J, Farias GA, Olmedilla A, Sanjuán J, Gallegos MT.

Mol Plant Microbe Interact. 2018 May;31(5):525-536. doi: 10.1094/MPMI-09-17-0232-R. Epub 2018 Mar 19.

PMID:
29261011
6.

Genome-Wide Identification of Medicago Peptides Involved in Macronutrient Responses and Nodulation.

de Bang TC, Lundquist PK, Dai X, Boschiero C, Zhuang Z, Pant P, Torres-Jerez I, Roy S, Nogales J, Veerappan V, Dickstein R, Udvardi MK, Zhao PX, Scheible WR.

Plant Physiol. 2017 Dec;175(4):1669-1689. doi: 10.1104/pp.17.01096. Epub 2017 Oct 13.

7.

Optimisation of imaging protocols in interventional cardiology: impact on patient doses.

Ordiales JM, Vano E, Nogales JM, Ramos J, López-Mínguez JR, Martínez G, Cerrato P, Álvarez FJ.

J Radiol Prot. 2017 Sep;37(3):684-696. doi: 10.1088/1361-6498/aa7dae. Epub 2017 Jul 5.

PMID:
28677594
8.

Outlining Core Pathways of Amyloid Toxicity in Bacteria with the RepA-WH1 Prionoid.

Molina-García L, Moreno-Del Álamo M, Botias P, Martín-Moldes Z, Fernández M, Sánchez-Gorostiaga A, Alonso-Del Valle A, Nogales J, García-Cantalejo J, Giraldo R.

Front Microbiol. 2017 Apr 4;8:539. doi: 10.3389/fmicb.2017.00539. eCollection 2017.

9.

The NtrY/NtrX System of Sinorhizobium meliloti GR4 Regulates Motility, EPS I Production, and Nitrogen Metabolism but Is Dispensable for Symbiotic Nitrogen Fixation.

Calatrava-Morales N, Nogales J, Ameztoy K, van Steenbergen B, Soto MJ.

Mol Plant Microbe Interact. 2017 Jul;30(7):566-577. doi: 10.1094/MPMI-01-17-0021-R. Epub 2017 May 17.

10.

Occupational dose reduction in cardiac catheterisation laboratory: a randomised trial using a shield drape placed on the patient.

Ordiales JM, Nogales JM, Vano E, López-Mínguez JR, Alvarez FJ, Ramos J, Martínez G, Sánchez RM.

Radiat Prot Dosimetry. 2017 Apr 25;174(2):255-261. doi: 10.1093/rpd/ncw139.

PMID:
27247448
11.

Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I.

Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. No abstract available.

12.

FleQ coordinates flagellum-dependent and -independent motilities in Pseudomonas syringae pv. tomato DC3000.

Nogales J, Vargas P, Farias GA, Olmedilla A, Sanjuán J, Gallegos MT.

Appl Environ Microbiol. 2015 Nov;81(21):7533-45. doi: 10.1128/AEM.01798-15. Epub 2015 Aug 21.

13.

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.

Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E.

Syst Appl Microbiol. 2015 Oct;38(7):462-71. doi: 10.1016/j.syapm.2015.07.002. Epub 2015 Jul 22.

PMID:
26259823
14.

Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network.

Latif H, Sahin M, Tarasova J, Tarasova Y, Portnoy VA, Nogales J, Zengler K.

Appl Environ Microbiol. 2015 Aug 15;81(16):5477-85. doi: 10.1128/AEM.01365-15. Epub 2015 Jun 5.

15.

Reduction of occupational radiation dose in staff at the cardiac catheterisation laboratory by protective material placed on the patient.

Ordiales JM, Nogales JM, Sánchez-Casanueva R, Vano E, Fernández JM, Álvarez FJ, Ramos J, Martínez G, López-Mínguez JR.

Radiat Prot Dosimetry. 2015 Jul;165(1-4):272-5. doi: 10.1093/rpd/ncv090. Epub 2015 Apr 5.

PMID:
25848096
16.

Genome Sequence of Pseudomonas azelaica Strain Aramco J.

El-Said Mohamed M, García JL, Martínez I, Del Cerro C, Nogales J, Díaz E.

Genome Announc. 2015 Mar 5;3(2). pii: e00037-15. doi: 10.1128/genomeA.00037-15.

17.

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida.

La Rosa R, Nogales J, Rojo F.

Environ Microbiol. 2015 Sep;17(9):3362-78. doi: 10.1111/1462-2920.12812. Epub 2015 Mar 27.

PMID:
25711694
18.

The TITAN-AMI multicenter registry evaluating the usage of Titan2 stent in patients with ST segment elevation myocardial infarction. Final result at 12-month follow-up.

Gómez-Hospital JA, Mauri J, Pinar E, Goicolea J, García Del Blanco B, Serra A, Tizon-Marcos H, Molina E, Sanchez E, Aragón V, Masotti M, Rodríguez J, Jiménez J, Ortas R, Martínez P, Serra B, Moreu J, Diego Nieto G, Bossa F, Nogales JM, Bassaganyas J, Díaz J, Cascón JD.

Minerva Cardioangiol. 2015 Feb;63(1):11-20.

PMID:
25600779
19.

Cyanobacteria as photosynthetic biocatalysts: a systems biology perspective.

Gudmundsson S, Nogales J.

Mol Biosyst. 2015 Jan;11(1):60-70. doi: 10.1039/c4mb00335g. Epub 2014 Nov 10. Review.

PMID:
25382198
20.

Optimizing genome-scale network reconstructions.

Monk J, Nogales J, Palsson BO.

Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. No abstract available.

PMID:
24811519
21.

Genome Sequence of Pseudomonas azelaica HBP1, Which Catabolizes 2-Hydroxybiphenyl Fungicide.

García JL, Rozas D, Del Cerro C, Nogales J, El-Said Mohamed M, Díaz E.

Genome Announc. 2014 Feb 13;2(1). pii: e01248-13. doi: 10.1128/genomeA.01248-13.

22.

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.

Microb Cell Fact. 2013 Nov 25;12:118. doi: 10.1186/1475-2859-12-118.

23.

Plant flavonoids target Pseudomonas syringae pv. tomato DC3000 flagella and type III secretion system.

Vargas P, Farias GA, Nogales J, Prada H, Carvajal V, Barón M, Rivilla R, Martín M, Olmedilla A, Gallegos MT.

Environ Microbiol Rep. 2013 Dec;5(6):841-50. doi: 10.1111/1758-2229.12086. Epub 2013 Aug 6.

PMID:
24249293
24.

Conjugal transfer of the Sinorhizobium meliloti 1021 symbiotic plasmid is governed through the concerted action of one- and two-component signal transduction regulators.

Nogales J, Blanca-Ordóñez H, Olivares J, Sanjuán J.

Environ Microbiol. 2013 Mar;15(3):811-21. doi: 10.1111/1462-2920.12073. Epub 2013 Jan 22.

PMID:
23336126
25.

Toward systems metabolic engineering in cyanobacteria: opportunities and bottlenecks.

Nogales J, Gudmundsson S, Thiele I.

Bioengineered. 2013 May-Jun;4(3):158-63. doi: 10.4161/bioe.22792. Epub 2012 Nov 8.

26.

Aerobic degradation of aromatic compounds.

Díaz E, Jiménez JI, Nogales J.

Curr Opin Biotechnol. 2013 Jun;24(3):431-42. doi: 10.1016/j.copbio.2012.10.010. Epub 2012 Nov 1. Review.

PMID:
23122741
27.

ExpR is not required for swarming but promotes sliding in Sinorhizobium meliloti.

Nogales J, Bernabéu-Roda L, Cuéllar V, Soto MJ.

J Bacteriol. 2012 Apr;194(8):2027-35. doi: 10.1128/JB.06524-11. Epub 2012 Feb 10.

28.

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis.

Nogales J, Gudmundsson S, Knight EM, Palsson BO, Thiele I.

Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2678-83. doi: 10.1073/pnas.1117907109. Epub 2012 Jan 30.

29.

FadD is required for utilization of endogenous fatty acids released from membrane lipids.

Pech-Canul Á, Nogales J, Miranda-Molina A, Álvarez L, Geiger O, Soto MJ, López-Lara IM.

J Bacteriol. 2011 Nov;193(22):6295-304. doi: 10.1128/JB.05450-11. Epub 2011 Sep 16.

30.

Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida.

Nogales J, Canales A, Jiménez-Barbero J, Serra B, Pingarrón JM, García JL, Díaz E.

Mol Microbiol. 2011 Jan;79(2):359-74. doi: 10.1111/j.1365-2958.2010.07448.x. Epub 2010 Nov 16.

31.

pSymA-dependent mobilization of the Sinorhizobium meliloti pSymB megaplasmid.

Blanca-Ordóñez H, Oliva-García JJ, Pérez-Mendoza D, Soto MJ, Olivares J, Sanjuán J, Nogales J.

J Bacteriol. 2010 Dec;192(23):6309-12. doi: 10.1128/JB.00549-10. Epub 2010 Oct 1.

32.

Transcriptome profiling of a Sinorhizobium meliloti fadD mutant reveals the role of rhizobactin 1021 biosynthesis and regulation genes in the control of swarming.

Nogales J, Domínguez-Ferreras A, Amaya-Gómez CV, van Dillewijn P, Cuéllar V, Sanjuán J, Olivares J, Soto MJ.

BMC Genomics. 2010 Mar 8;11:157. doi: 10.1186/1471-2164-11-157.

33.

Genetic characterization of oligopeptide uptake systems in Sinorhizobium meliloti.

Nogales J, Muñoz S, Olivares J, Sanjuán J.

FEMS Microbiol Lett. 2009 Apr;293(2):177-87. doi: 10.1111/j.1574-6968.2009.01527.x.

34.

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.

Nogales J, Palsson BØ, Thiele I.

BMC Syst Biol. 2008 Sep 16;2:79. doi: 10.1186/1752-0509-2-79.

35.

Abciximab offers greater benefits to insulin-dependent diabetic patients undergoing coronary stent implantation.

López-Mínguez JR, Nogales JM, González R, Palanco C, Doncel J, Vaello A, Giménez F, Morales A, Alonso R, Merchán A.

Cardiovasc Revasc Med. 2007 Jul-Sep;8(3):175-82.

PMID:
17765647
36.

[Ventricular fibrillation in a 73-year-old woman with spondylodiscitis].

Muñoz L, García-de la Llana F, Nogales JM.

Enferm Infecc Microbiol Clin. 2007 Jun-Jul;25(6):418-9. Spanish. No abstract available.

PMID:
17583661
37.

Characterization of the last step of the aerobic phenylacetic acid degradation pathway.

Nogales J, Macchi R, Franchi F, Barzaghi D, Fernández C, García JL, Bertoni G, Díaz E.

Microbiology. 2007 Feb;153(Pt 2):357-65.

PMID:
17259607
38.

Sinorhizobium meliloti genes involved in tolerance to the antimicrobial peptide protamine.

Nogales J, Muñoz S, Olivares J, Sanjuán J.

FEMS Microbiol Lett. 2006 Nov;264(2):160-7.

39.

Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.

Yuste L, Hervás AB, Canosa I, Tobes R, Jiménez JI, Nogales J, Pérez-Pérez MM, Santero E, Díaz E, Ramos JL, de Lorenzo V, Rojo F.

Environ Microbiol. 2006 Jan;8(1):165-77.

PMID:
16343331
40.

Clinical and angiographic follow-up in patients with Cypher or Taxus stents in populations with high percentage of trial-excluded lesions.

López-Mínguez JR, Nogales JM, Morales A, Alonso R, González R, Merchán A.

Cardiovasc Revasc Med. 2005 Jul-Sep;6(3):92-8.

PMID:
16275604
41.

Identification of the rctA gene, which is required for repression of conjugative transfer of rhizobial symbiotic megaplasmids.

Pérez-Mendoza D, Sepúlveda E, Pando V, Muñoz S, Nogales J, Olivares J, Soto MJ, Herrera-Cervera JA, Romero D, Brom S, Sanjuán J.

J Bacteriol. 2005 Nov;187(21):7341-50.

42.

Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases.

Nogales J, Canales A, Jiménez-Barbero J, García JL, Díaz E.

J Biol Chem. 2005 Oct 21;280(42):35382-90. Epub 2005 Jul 18.

43.

Do myocardial perfusion SPECT and radionuclide angiography studies in adult patients with hypertrophic cardiomyopathy have prognostic implications?

Romero-Farina G, Candell-Riera J, Galve E, Armadans L, Ramos F, Castell J, Aguadé S, Nogales JM, Soler-Soler J.

J Nucl Cardiol. 2004 Sep-Oct;11(5):578-86.

PMID:
15472643
44.

[Neurohormonal prediction of post-infarction ventricular dysfunction and coronary disease].

Nogales JM, Fuentes ME, Morales A, Martínez L, Marzal D, Alonso R.

Rev Esp Cardiol. 2004 May;57(5):472-5. Spanish.

45.

Functional analysis and regulation of the malate synthase from Chlamydomonas reinhardtii.

Nogales J, Guijo MI, Quesada A, Merchán F.

Planta. 2004 Jun;219(2):325-31. Epub 2004 Feb 27.

PMID:
14991408
46.

Involvement of the Sinorhizobium meliloti leuA gene in activation of nodulation genes by NodD1 and luteolin.

Sanjuán-Pinilla JM, Muñoz S, Nogales J, Olivares J, Sanjuán J.

Arch Microbiol. 2002 Jul;178(1):36-44. Epub 2002 Apr 23.

PMID:
12070767
47.

Rhizobium tropici genes involved in free-living salt tolerance are required for the establishment of efficient nitrogen-fixing symbiosis with Phaseolus vulgaris.

Nogales J, Campos R, BenAbdelkhalek H, Olivares J, Lluch C, Sanjuan J.

Mol Plant Microbe Interact. 2002 Mar;15(3):225-32.

48.

Longitudinal overgrowth of bone after osteotomy in young rats: influence of bone stability.

Garcés GL, García-Castellano JM, Nogales J.

Calcif Tissue Int. 1997 Apr;60(4):391-3.

PMID:
9075639

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