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Items: 14

1.

Chance and pleiotropy dominate genetic diversity in complex bacterial environments.

Noda-García L, Davidi D, Korenblum E, Elazar A, Putintseva E, Aharoni A, Tawfik DS.

Nat Microbiol. 2019 Jul;4(7):1221-1230. doi: 10.1038/s41564-019-0412-y. Epub 2019 Apr 1.

PMID:
30936490
2.

Metabolite-Enzyme Coevolution: From Single Enzymes to Metabolic Pathways and Networks.

Noda-Garcia L, Liebermeister W, Tawfik DS.

Annu Rev Biochem. 2018 Jun 20;87:187-216. doi: 10.1146/annurev-biochem-062917-012023. Review.

PMID:
29925259
3.

The genetic basis for the adaptation of E. coli to sugar synthesis from CO2.

Herz E, Antonovsky N, Bar-On Y, Davidi D, Gleizer S, Prywes N, Noda-Garcia L, Lyn Frisch K, Zohar Y, Wernick DG, Savidor A, Barenholz U, Milo R.

Nat Commun. 2017 Nov 22;8(1):1705. doi: 10.1038/s41467-017-01835-3.

4.

Bacilli glutamate dehydrogenases diverged via coevolution of transcription and enzyme regulation.

Noda-Garcia L, Romero Romero ML, Longo LM, Kolodkin-Gal I, Tawfik DS.

EMBO Rep. 2017 Jul;18(7):1139-1149. doi: 10.15252/embr.201743990. Epub 2017 May 3.

5.

Evolution of substrate specificity in a retained enzyme driven by gene loss.

Juárez-Vázquez AL, Edirisinghe JN, Verduzco-Castro EA, Michalska K, Wu C, Noda-García L, Babnigg G, Endres M, Medina-Ruíz S, Santoyo-Flores J, Carrillo-Tripp M, Ton-That H, Joachimiak A, Henry CS, Barona-Gómez F.

Elife. 2017 Mar 31;6. pii: e22679. doi: 10.7554/eLife.22679.

6.

Native Mass Spectrometry of Recombinant Proteins from Crude Cell Lysates.

Gan J, Ben-Nissan G, Arkind G, Tarnavsky M, Trudeau D, Noda Garcia L, Tawfik DS, Sharon M.

Anal Chem. 2017 Apr 18;89(8):4398-4404. doi: 10.1021/acs.analchem.7b00398. Epub 2017 Apr 5.

7.

Antibiotic resistance evolved via inactivation of a ribosomal RNA methylating enzyme.

Stojković V, Noda-Garcia L, Tawfik DS, Fujimori DG.

Nucleic Acids Res. 2016 Oct 14;44(18):8897-8907. Epub 2016 Aug 5.

8.

Co-occurrence of analogous enzymes determines evolution of a novel (βα)8-isomerase sub-family after non-conserved mutations in flexible loop.

Verduzco-Castro EA, Michalska K, Endres M, Juárez-Vazquez AL, Noda-García L, Chang C, Henry CS, Babnigg G, Joachimiak A, Barona-Gómez F.

Biochem J. 2016 May 1;473(9):1141-52. doi: 10.1042/BJ20151271. Epub 2016 Feb 29.

9.

Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.

Noda-García L, Juárez-Vázquez AL, Ávila-Arcos MC, Verduzco-Castro EA, Montero-Morán G, Gaytán P, Carrillo-Tripp M, Barona-Gómez F.

BMC Evol Biol. 2015 Jun 10;15:107. doi: 10.1186/s12862-015-0378-1.

10.

Enzyme evolution beyond gene duplication: A model for incorporating horizontal gene transfer.

Noda-García L, Barona-Gómez F.

Mob Genet Elements. 2013 Sep 1;3(5):e26439. Epub 2013 Oct 2.

11.

Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer.

Noda-García L, Camacho-Zarco AR, Medina-Ruíz S, Gaytán P, Carrillo-Tripp M, Fülöp V, Barona-Gómez F.

Mol Biol Evol. 2013 Sep;30(9):2024-34. doi: 10.1093/molbev/mst115. Epub 2013 Jun 25.

PMID:
23800623
12.

What can genome-scale metabolic network reconstructions do for prokaryotic systematics?

Barona-Gómez F, Cruz-Morales P, Noda-García L.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):35-43. doi: 10.1007/s10482-011-9655-1. Epub 2011 Oct 21.

PMID:
22016333
13.

Identification and analysis of residues contained on beta --> alpha loops of the dual-substrate (beta alpha)8 phosphoribosyl isomerase A specific for its phosphoribosyl anthranilate isomerase activity.

Noda-García L, Camacho-Zarco AR, Verdel-Aranda K, Wright H, Soberón X, Fülöp V, Barona-Gómez F.

Protein Sci. 2010 Mar;19(3):535-43. doi: 10.1002/pro.331.

14.

The structure/function relationship of a dual-substrate (betaalpha)8-isomerase.

Wright H, Noda-García L, Ochoa-Leyva A, Hodgson DA, Fülöp V, Barona-Gómez F.

Biochem Biophys Res Commun. 2008 Jan 4;365(1):16-21. Epub 2007 Oct 29.

PMID:
17967415

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