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Items: 28

1.

Identification of novel potential acetate-oxidizing bacteria in thermophilic methanogenic chemostats by DNA stable isotope probing.

Zheng D, Wang HZ, Gou M, Nobu MK, Narihiro T, Hu B, Nie Y, Tang YQ.

Appl Microbiol Biotechnol. 2019 Aug 15. doi: 10.1007/s00253-019-10078-9. [Epub ahead of print]

PMID:
31418053
2.

Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics.

Ziels RM, Nobu MK, Sousa DZ.

mSystems. 2019 Aug 6;4(4). pii: e00159-19. doi: 10.1128/mSystems.00159-19.

3.

Response of Propionate-Degrading Methanogenic Microbial Communities to Inhibitory Conditions.

Wang HZ, Yan YC, Gou M, Yi Y, Xia ZY, Nobu MK, Narihiro T, Tang YQ.

Appl Biochem Biotechnol. 2019 Sep;189(1):233-248. doi: 10.1007/s12010-019-03005-1. Epub 2019 Apr 10.

PMID:
30972704
4.

Aggregatilinea lenta gen. nov., sp. nov., a slow-growing, facultatively anaerobic bacterium isolated from subseafloor sediment, and proposal of the new order Aggregatilineales ord. nov. within the class Anaerolineae of the phylum Chloroflexi.

Nakahara N, Nobu MK, Takaki Y, Miyazaki M, Tasumi E, Sakai S, Ogawara M, Yoshida N, Tamaki H, Yamanaka Y, Katayama A, Yamaguchi T, Takai K, Imachi H.

Int J Syst Evol Microbiol. 2019 Apr;69(4):1185-1194. doi: 10.1099/ijsem.0.003291. Epub 2019 Feb 18.

PMID:
30775966
5.

Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome.

Narihiro T, Nobu MK, Hori T, Aoyagi T, Sato Y, Inaba T, Aizawa H, Tamaki H, Habe H.

Microbes Environ. 2019 Mar 30;34(1):89-94. doi: 10.1264/jsme2.ME18108. Epub 2018 Dec 22.

6.

Shaping microbial consortia in coupling glycerol fermentation and carboxylate chain elongation for Co-production of 1,3-propanediol and caproate: Pathways and mechanisms.

Leng L, Nobu MK, Narihiro T, Yang P, Amy Tan GY, Lee PH.

Water Res. 2019 Jan 1;148:281-291. doi: 10.1016/j.watres.2018.10.063. Epub 2018 Oct 24.

PMID:
30390509
7.

Novel Geobacter species and diverse methanogens contribute to enhanced methane production in media-added methanogenic reactors.

Mei R, Nobu MK, Narihiro T, Yu J, Sathyagal A, Willman E, Liu WT.

Water Res. 2018 Dec 15;147:403-412. doi: 10.1016/j.watres.2018.10.026. Epub 2018 Oct 11.

PMID:
30336343
8.

Co-occurrence network analysis reveals thermodynamics-driven microbial interactions in methanogenic bioreactors.

Narihiro T, Nobu MK, Bocher BTW, Mei R, Liu WT.

Environ Microbiol Rep. 2018 Dec;10(6):673-685. doi: 10.1111/1758-2229.12689. Epub 2018 Sep 26.

PMID:
30136425
9.

Novel energy conservation strategies and behaviour of Pelotomaculum schinkii driving syntrophic propionate catabolism.

Hidalgo-Ahumada CAP, Nobu MK, Narihiro T, Tamaki H, Liu WT, Kamagata Y, Stams AJM, Imachi H, Sousa DZ.

Environ Microbiol. 2018 Dec;20(12):4503-4511. doi: 10.1111/1462-2920.14388. Epub 2018 Oct 30.

PMID:
30126076
10.

Draft Genome Sequence of Moorella sp. Strain Hama-1, a Novel Acetogenic Bacterium Isolated from a Thermophilic Digestion Reactor.

Harada J, Yamada T, Giri S, Hamada M, Nobu MK, Narihiro T, Tsuji H, Daimon H.

Genome Announc. 2018 Jun 14;6(24). pii: e00517-18. doi: 10.1128/genomeA.00517-18.

11.

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.

Hawley AK, Nobu MK, Wright JJ, Durno WE, Morgan-Lang C, Sage B, Schwientek P, Swan BK, Rinke C, Torres-Beltrán M, Mewis K, Liu WT, Stepanauskas R, Woyke T, Hallam SJ.

Nat Commun. 2017 Nov 15;8(1):1507. doi: 10.1038/s41467-017-01376-9.

12.

Thermodynamically diverse syntrophic aromatic compound catabolism.

Nobu MK, Narihiro T, Liu M, Kuroda K, Mei R, Liu WT.

Environ Microbiol. 2017 Nov;19(11):4576-4586. doi: 10.1111/1462-2920.13922. Epub 2017 Oct 2.

PMID:
28892300
13.

Operation-driven heterogeneity and overlooked feed-associated populations in global anaerobic digester microbiome.

Mei R, Nobu MK, Narihiro T, Kuroda K, Muñoz Sierra J, Wu Z, Ye L, Lee PKH, Lee PH, van Lier JB, McInerney MJ, Kamagata Y, Liu WT.

Water Res. 2017 Nov 1;124:77-84. doi: 10.1016/j.watres.2017.07.050. Epub 2017 Jul 20.

PMID:
28750287
14.

Impacts of biostimulation and bioaugmentation on the performance and microbial ecology in methanogenic reactors treating purified terephthalic acid wastewater.

Liu M, Wang S, Nobu MK, Bocher BTW, Kaley SA, Liu WT.

Water Res. 2017 Oct 1;122:308-316. doi: 10.1016/j.watres.2017.06.008. Epub 2017 Jun 4.

PMID:
28614743
15.

A Single-Granule-Level Approach Reveals Ecological Heterogeneity in an Upflow Anaerobic Sludge Blanket Reactor.

Kuroda K, Nobu MK, Mei R, Narihiro T, Bocher BT, Yamaguchi T, Liu WT.

PLoS One. 2016 Dec 9;11(12):e0167788. doi: 10.1371/journal.pone.0167788. eCollection 2016.

16.
17.

Complete Genome Sequence of the Intracellular Bacterial Symbiont TC1 in the Anaerobic Ciliate Trimyema compressum.

Shinzato N, Aoyama H, Saitoh S, Nikoh N, Nakano K, Shimoji M, Shinzato M, Satou K, Teruya K, Hirano T, Yamada T, Nobu MK, Tamaki H, Shirai Y, Park S, Narihiro T, Liu WT, Kamagata Y.

Genome Announc. 2016 Sep 22;4(5). pii: e01032-16. doi: 10.1128/genomeA.01032-16.

18.

Effects of heat shocks on microbial community structure and microbial activity of a methanogenic enrichment degrading benzoate.

Mei R, Narihiro T, Nobu MK, Liu WT.

Lett Appl Microbiol. 2016 Nov;63(5):356-362. doi: 10.1111/lam.12629. Epub 2016 Sep 26.

PMID:
27490172
19.

Comparative Genomics of Syntrophic Branched-Chain Fatty Acid Degrading Bacteria.

Narihiro T, Nobu MK, Tamaki H, Kamagata Y, Sekiguchi Y, Liu WT.

Microbes Environ. 2016 Sep 29;31(3):288-92. doi: 10.1264/jsme2.ME16057. Epub 2016 Jul 16.

20.

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen.

Nobu MK, Narihiro T, Kuroda K, Mei R, Liu WT.

ISME J. 2016 Oct;10(10):2478-87. doi: 10.1038/ismej.2016.33. Epub 2016 Mar 4.

21.

Draft Genome Sequence of Syntrophomonas wolfei subsp. methylbutyratica Strain 4J5T (JCM 14075), a Mesophilic Butyrate- and 2-Methylbutyrate-Degrading Syntroph.

Narihiro T, Nobu MK, Tamaki H, Kamagata Y, Liu WT.

Genome Announc. 2016 Mar 3;4(2). pii: e00047-16. doi: 10.1128/genomeA.00047-16.

22.

Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

Nobu MK, Dodsworth JA, Murugapiran SK, Rinke C, Gies EA, Webster G, Schwientek P, Kille P, Parkes RJ, Sass H, Jørgensen BB, Weightman AJ, Liu WT, Hallam SJ, Tsiamis G, Woyke T, Hedlund BP.

ISME J. 2016 Feb;10(2):273-86. doi: 10.1038/ismej.2015.97. Epub 2015 Jun 19.

23.

Microbial community analysis of anaerobic reactors treating soft drink wastewater.

Narihiro T, Kim NK, Mei R, Nobu MK, Liu WT.

PLoS One. 2015 Mar 6;10(3):e0119131. doi: 10.1371/journal.pone.0119131. eCollection 2015.

24.

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor.

Nobu MK, Narihiro T, Rinke C, Kamagata Y, Tringe SG, Woyke T, Liu WT.

ISME J. 2015 Aug;9(8):1710-22. doi: 10.1038/ismej.2014.256. Epub 2015 Jan 23.

25.

The nexus of syntrophy-associated microbiota in anaerobic digestion revealed by long-term enrichment and community survey.

Narihiro T, Nobu MK, Kim NK, Kamagata Y, Liu WT.

Environ Microbiol. 2015 May;17(5):1707-20. doi: 10.1111/1462-2920.12616. Epub 2014 Oct 24.

PMID:
25186254
26.

The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow.

Nobu MK, Narihiro T, Hideyuki T, Qiu YL, Sekiguchi Y, Woyke T, Goodwin L, Davenport KW, Kamagata Y, Liu WT.

Environ Microbiol. 2015 Dec;17(12):4861-72. doi: 10.1111/1462-2920.12444. Epub 2014 Mar 25.

PMID:
24589017
27.

Draft Genome Sequence of Syntrophorhabdus aromaticivorans Strain UI, a Mesophilic Aromatic Compound-Degrading Syntroph.

Nobu MK, Narihiro T, Tamaki H, Qiu YL, Sekiguchi Y, Woyke T, Goodwin L, Davenport KW, Kamagata Y, Liu WT.

Genome Announc. 2014 Feb 6;2(1). pii: e01064-13. doi: 10.1128/genomeA.01064-13.

28.

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