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Items: 47

1.

Amplicon Sequencing Reveals Microbiological Signatures in Spent Nuclear Fuel Storage Basins.

Bagwell CE, Noble PA, Milliken CE, Li D, Kaplan DI.

Front Microbiol. 2018 Mar 9;9:377. doi: 10.3389/fmicb.2018.00377. eCollection 2018.

2.

Gene Meter: Accurate abundance calculations of gene expression.

Pozhitkov AE, Noble PA.

Commun Integr Biol. 2017 Sep 6;10(4):e1329785. doi: 10.1080/19420889.2017.1329785. eCollection 2017.

3.

Gene expression in the twilight of death: The increase of thousands of transcripts has implications to transplantation, cancer, and forensic research.

Pozhitkov AE, Noble PA.

Bioessays. 2017 Sep;39(9). doi: 10.1002/bies.201700066. Epub 2017 Aug 8. Review.

PMID:
28787088
4.

Accurate predictions of postmortem interval using linear regression analyses of gene meter expression data.

Hunter MC, Pozhitkov AE, Noble PA.

Forensic Sci Int. 2017 Jun;275:90-101. doi: 10.1016/j.forsciint.2017.02.027. Epub 2017 Mar 4.

PMID:
28329724
5.

Tracing the dynamics of gene transcripts after organismal death.

Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA.

Open Biol. 2017 Jan;7(1). pii: 160267. doi: 10.1098/rsob.160267.

6.

Datasets used to discover the microbial signatures of oral dysbiosis, periodontitis and edentulism in humans.

Colby Hunter M, Pozhitkov AE, Noble PA.

Data Brief. 2016 Nov 19;10:30-32. eCollection 2017 Feb.

7.

Microbial signatures of oral dysbiosis, periodontitis and edentulism revealed by Gene Meter methodology.

Hunter MC, Pozhitkov AE, Noble PA.

J Microbiol Methods. 2016 Dec;131:85-101. doi: 10.1016/j.mimet.2016.09.019. Epub 2016 Oct 4.

PMID:
27717873
8.

A survey of biofilms on wastewater aeration diffusers suggests bacterial community composition and function vary by substrate type and time.

Noble PA, Park HD, Olson BH, Asvapathanagul P, Hunter MC, Garrido-Baserba M, Lee SH, Rosso D.

Appl Microbiol Biotechnol. 2016 Jul;100(14):6361-73. doi: 10.1007/s00253-016-7604-7. Epub 2016 Jun 13.

PMID:
27294381
9.

Discovery of Bioactive Metabolites in Biofuel Microalgae That Offer Protection against Predatory Bacteria.

Bagwell CE, Abernathy A, Barnwell R, Milliken CE, Noble PA, Dale T, Beauchesne KR, Moeller PD.

Front Microbiol. 2016 Apr 18;7:516. doi: 10.3389/fmicb.2016.00516. eCollection 2016.

10.

Towards microbiome transplant as a therapy for periodontitis: an exploratory study of periodontitis microbial signature contrasted by oral health, caries and edentulism.

Pozhitkov AE, Leroux BG, Randolph TW, Beikler T, Flemmig TF, Noble PA.

BMC Oral Health. 2015 Oct 14;15:125. doi: 10.1186/s12903-015-0109-4.

11.

Interruption of Electrical Conductivity of Titanium Dental Implants Suggests a Path Towards Elimination Of Corrosion.

Pozhitkov AE, Daubert D, Brochwicz Donimirski A, Goodgion D, Vagin MY, Leroux BG, Hunter CM, Flemmig TF, Noble PA, Bryers JD.

PLoS One. 2015 Oct 13;10(10):e0140393. doi: 10.1371/journal.pone.0140393. eCollection 2015.

12.

Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans.

Can I, Javan GT, Pozhitkov AE, Noble PA.

J Microbiol Methods. 2014 Nov;106:1-7. doi: 10.1016/j.mimet.2014.07.026. Epub 2014 Aug 1.

PMID:
25091187
13.

A revised design for microarray experiments to account for experimental noise and uncertainty of probe response.

Pozhitkov AE, Noble PA, Bryk J, Tautz D.

PLoS One. 2014 Mar 11;9(3):e91295. doi: 10.1371/journal.pone.0091295. eCollection 2014.

14.

Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.

Harrison A, Binder H, Buhot A, Burden CJ, Carlon E, Gibas C, Gamble LJ, Halperin A, Hooyberghs J, Kreil DP, Levicky R, Noble PA, Ott A, Pettitt BM, Tautz D, Pozhitkov AE.

Nucleic Acids Res. 2013 Mar 1;41(5):2779-96. doi: 10.1093/nar/gks1358. Epub 2013 Jan 9. Review.

15.

High-throughput methods for analysis of the human oral microbiome.

Pozhitkov AE, Beikler T, Flemmig T, Noble PA.

Periodontol 2000. 2011 Feb;55(1):70-86. doi: 10.1111/j.1600-0757.2010.00380.x. Review. No abstract available.

PMID:
21134229
16.

Long-term cost-effectiveness of weight management in primary care.

Trueman P, Haynes SM, Felicity Lyons G, Louise McCombie E, McQuigg MS, Mongia S, Noble PA, Quinn MF, Ross HM, Thompson F, Broom JI, Laws RA, Reckless JP, Kumar S, Lean ME, Frost GS, Finer N, Haslam DW, Morrison D, Sloan B; Counterweight Project Team.

Int J Clin Pract. 2010 May;64(6):775-83. doi: 10.1111/j.1742-1241.2010.02349.x. Epub 2010 Mar 29.

PMID:
20353431
17.

Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities.

Pozhitkov AE, Boube I, Brouwer MH, Noble PA.

Nucleic Acids Res. 2010 Mar;38(5):e28. doi: 10.1093/nar/gkp1122. Epub 2009 Dec 6.

18.

Engaging patients, clinicians and health funders in weight management: the Counterweight Programme.

Counterweight Project Team, McQuigg M, Brown JE, Broom JI, Laws RA, Reckless JP, Noble PA, Kumar S, McCombie EL, Lean ME, Lyons GF, Mongia S, Frost GS, Quinn MF, Barth JH, Haynes SM, Finer N, Haslam DW, Ross HM, Hole DJ, Radziwonik S.

Fam Pract. 2008 Dec;25 Suppl 1:i79-86. doi: 10.1093/fampra/cmn081. Epub 2008 Nov 27.

PMID:
19042914
19.

Use of hidden correlations in short oligonucleotide array data are insufficient for accurate quantification of nucleic acid targets in complex target mixtures.

Rule RA, Pozhitkov AE, Noble PA.

J Microbiol Methods. 2009 Feb;76(2):188-95. doi: 10.1016/j.mimet.2008.10.011. Epub 2008 Oct 30.

PMID:
19007823
20.

Simultaneous quantification of multiple nucleic acid targets in complex rRNA mixtures using high density microarrays and nonspecific hybridization as a source of information.

Pozhitkov AE, Nies G, Kleinhenz B, Tautz D, Noble PA.

J Microbiol Methods. 2008 Sep;75(1):92-102. doi: 10.1016/j.mimet.2008.05.013. Epub 2008 May 19.

PMID:
18579240
21.

Concentration dependency of nonequilibrium thermal dissociation curves in complex target samples.

Pozhitkov AE, Rule RA, Stedtfeld RD, Hashsham SA, Noble PA.

J Microbiol Methods. 2008 Aug;74(2-3):82-8. doi: 10.1016/j.mimet.2008.03.010. Epub 2008 Apr 4.

PMID:
18471911
22.

The Counterweight programme: Prevalence of CVD risk factors by body mass index and the impact of 10% weight change.

McQuigg M, Brown JE, Broom J, Laws RA, Reckless JP, Noble PA, Kumar S, McCombie EL, Lean ME, Lyons FG, Frost GS, Quinn MF, Barth JH, Haynes SM, Finer N, Haslam DW, Ross HM, Hole DJ, Radziwonik S.

Obes Res Clin Pract. 2008 Mar;2(1):I-II. doi: 10.1016/j.orcp.2008.01.002.

PMID:
24351674
23.

Oligonucleotide microarrays: widely applied--poorly understood.

Pozhitkov AE, Tautz D, Noble PA.

Brief Funct Genomic Proteomic. 2007 Jun;6(2):141-8. Epub 2007 Jul 20. Review.

PMID:
17644526
24.

High variability in melting profiles from gel pad arrays.

Pozhitkov AE, Noble PA.

Environ Microbiol. 2007 Jul;9(7):1865; author reply 1866-7. No abstract available.

PMID:
17564621
25.

Development of a statistically robust quantification method for microorganisms in mixtures using oligonucleotide microarrays.

Pozhitkov AE, Bailey KD, Noble PA.

J Microbiol Methods. 2007 Aug;70(2):292-300. Epub 2007 May 10.

PMID:
17553581
26.
27.

Comment on "Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays".

Pozhitkov AE, Noble PA.

Environ Sci Technol. 2007 Mar 1;41(5):1797-8; author reply 1799-1800. No abstract available.

PMID:
17396676
28.

Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted.

Pozhitkov A, Noble PA, Domazet-Loso T, Nolte AW, Sonnenberg R, Staehler P, Beier M, Tautz D.

Nucleic Acids Res. 2006 May 17;34(9):e66.

29.

Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks.

Pozhitkov A, Chernov B, Yershov G, Noble PA.

Appl Environ Microbiol. 2005 Dec;71(12):8663-76.

30.

Empowering primary care to tackle the obesity epidemic: the Counterweight Programme.

McQuigg M, Brown J, Broom J, Laws RA, Reckless JP, Noble PA, Kumar S, McCombie EL, Lean ME, Lyons GF, Frost GS, Quinn MF, Barth JH, Haynes SM, Finer N, Ross HM, Hole DJ; Counterweight Project Team.

Eur J Clin Nutr. 2005 Aug;59 Suppl 1:S93-100; discussion S101.

PMID:
16052202
31.

DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples.

Kelly JJ, Siripong S, McCormack J, Janus LR, Urakawa H, El Fantroussi S, Noble PA, Sappelsa L, Rittmann BE, Stahl DA.

Water Res. 2005 Sep;39(14):3229-38.

PMID:
16009395
32.

DNA microarrays as salivary diagnostic tools for characterizing the oral cavity's microbial community.

Smoot LM, Smoot JC, Smidt H, Noble PA, Könneke M, McMurry ZA, Stahl DA.

Adv Dent Res. 2005 Jun;18(1):6-11. No abstract available.

PMID:
15998937
33.

Contrasting patterns of phytoplankton community pigment composition in two salt marsh estuaries in southeastern United States.

Noble PA, Tymowski RG, Fletcher M, Morris JT, Lewitus AJ.

Appl Environ Microbiol. 2003 Jul;69(7):4129-43.

34.

Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays.

Urakawa H, El Fantroussi S, Smidt H, Smoot JC, Tribou EH, Kelly JJ, Noble PA, Stahl DA.

Appl Environ Microbiol. 2003 May;69(5):2848-56.

35.

Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays.

El Fantroussi S, Urakawa H, Bernhard AE, Kelly JJ, Noble PA, Smidt H, Yershov GM, Stahl DA.

Appl Environ Microbiol. 2003 Apr;69(4):2377-82.

36.

Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses.

Urakawa H, Noble PA, El Fantroussi S, Kelly JJ, Stahl DA.

Appl Environ Microbiol. 2002 Jan;68(1):235-44.

37.

Analysis of genomic sequences by Chaos Game Representation.

Almeida JS, Carriço JA, Maretzek A, Noble PA, Fletcher M.

Bioinformatics. 2001 May;17(5):429-37.

PMID:
11331237
38.

Neural computing in microbiology.

Almeida JS, Noble PA.

J Microbiol Methods. 2000 Dec 1;43(1):1-2. No abstract available.

PMID:
11084224
39.
41.

Factors influencing capacitance-based monitoring of microbial growth.

Noble PA, Dziuba M, Harrison DJ, Albritton WL.

J Microbiol Methods. 1999 Jul;37(1):51-64.

PMID:
10395464
42.
43.

Tetranucleotide frequencies in microbial genomes.

Noble PA, Citek RW, Ogunseitan OA.

Electrophoresis. 1998 Apr;19(4):528-35.

PMID:
9588798
44.
45.

Development of bacterial biofilms on silastic catheter materials in peritoneal dialysis fluid.

Dasgupta MK, Ward K, Noble PA, Larabie M, Costerton JW.

Am J Kidney Dis. 1994 May;23(5):709-16.

PMID:
8172213
46.
47.

Heterotrophic plate counts of surface water samples by using impedance methods.

Noble PA, Ashton E, Davidson CA, Albritton WL.

Appl Environ Microbiol. 1991 Nov;57(11):3287-91.

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