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Items: 1 to 50 of 186

1.

Single event visualization of unconventional secretion of FGF2.

Dimou E, Cosentino K, Platonova E, Ros U, Sadeghi M, Kashyap P, Katsinelos T, Wegehingel S, Noé F, García-Sáez AJ, Ewers H, Nickel W.

J Cell Biol. 2018 Nov 23. pii: jcb.201802008. doi: 10.1083/jcb.201802008. [Epub ahead of print]

PMID:
30470711
2.

OpenPathSampling: A Python framework for path sampling simulations. II. Building and customizing path ensembles and sample schemes.

Swenson D, Prinz JH, Noé F, Chodera JD, Bolhuis PG.

J Chem Theory Comput. 2018 Oct 25. doi: 10.1021/acs.jctc.8b00627. [Epub ahead of print]

PMID:
30359525
3.

Author Correction: VAMPnets for deep learning of molecular kinetics.

Mardt A, Pasquali L, Wu H, Noé F.

Nat Commun. 2018 Oct 22;9(1):4443. doi: 10.1038/s41467-018-06999-0.

4.

OpenPathSampling: A Python framework for path sampling simulations. I. Basics.

Swenson D, Prinz JH, Noé F, Chodera JD, Bolhuis PG.

J Chem Theory Comput. 2018 Oct 18. doi: 10.1021/acs.jctc.8b00626. [Epub ahead of print]

PMID:
30336030
5.

Ski Boots Do Not Impair Standing Balance by Restricting Ankle-Joint Mobility.

Noé F, García-Massó X, Ledez D, Paillard T.

Hum Factors. 2018 Oct 3:18720818801734. doi: 10.1177/0018720818801734. [Epub ahead of print]

PMID:
30281333
6.

Reversible Interacting-Particle Reaction Dynamics.

Fröhner C, Noé F.

J Phys Chem B. 2018 Sep 4. doi: 10.1021/acs.jpcb.8b06981. [Epub ahead of print]

PMID:
30125111
7.

It takes two transducins to activate the cGMP-phosphodiesterase 6 in retinal rods.

Qureshi BM, Behrmann E, Schöneberg J, Loerke J, Bürger J, Mielke T, Giesebrecht J, Noé F, Lamb TD, Hofmann KP, Spahn CMT, Heck M.

Open Biol. 2018 Aug;8(8). pii: 180075. doi: 10.1098/rsob.180075.

8.

Grand canonical diffusion-influenced reactions: A stochastic theory with applications to multiscale reaction-diffusion simulations.

Del Razo MJ, Qian H, Noé F.

J Chem Phys. 2018 Jul 28;149(4):044102. doi: 10.1063/1.5037060.

PMID:
30068197
9.

Time-lagged autoencoders: Deep learning of slow collective variables for molecular kinetics.

Wehmeyer C, Noé F.

J Chem Phys. 2018 Jun 28;148(24):241703. doi: 10.1063/1.5011399.

PMID:
29960344
10.

MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations.

Dibak M, Del Razo MJ, De Sancho D, Schütte C, Noé F.

J Chem Phys. 2018 Jun 7;148(21):214107. doi: 10.1063/1.5020294.

PMID:
29884049
11.

The influence of wearing ski-boots with different rigidity characteristics on postural control.

Noé F, García-Massó X, Delaygue P, Melon A, Paillard T.

Sports Biomech. 2018 May 21:1-11. doi: 10.1080/14763141.2018.1452973. [Epub ahead of print]

PMID:
29781789
12.

Warm-up Optimizes Postural Control but Requires Some Minutes of Recovery.

Paillard T, Kadri MA, Nouar MB, Noé F.

J Strength Cond Res. 2018 Oct;32(10):2725-2729. doi: 10.1519/JSC.0000000000002592.

PMID:
29746382
13.

Rapid Calculation of Molecular Kinetics Using Compressed Sensing.

Litzinger F, Boninsegna L, Wu H, Nüske F, Patel R, Baraniuk R, Noé F, Clementi C.

J Chem Theory Comput. 2018 May 8;14(5):2771-2783. doi: 10.1021/acs.jctc.8b00089. Epub 2018 Apr 24.

PMID:
29660273
14.

Author Correction: Protein-peptide association kinetics beyond the seconds timescale from atomistic simulations.

Paul F, Wehmeyer C, Abualrous ET, Wu H, Crabtree MD, Schöneberg J, Clarke J, Freund C, Weikl TR, Noé F.

Nat Commun. 2018 Mar 9;9(1):1073. doi: 10.1038/s41467-018-03452-0.

15.

Identifying Conformational-Selection and Induced-Fit Aspects in the Binding-Induced Folding of PMI from Markov State Modeling of Atomistic Simulations.

Paul F, Noé F, Weikl TR.

J Phys Chem B. 2018 May 31;122(21):5649-5656. doi: 10.1021/acs.jpcb.7b12146. Epub 2018 Mar 27.

PMID:
29522679
16.

Particle-based membrane model for mesoscopic simulation of cellular dynamics.

Sadeghi M, Weikl TR, Noé F.

J Chem Phys. 2018 Jan 28;148(4):044901. doi: 10.1063/1.5009107.

PMID:
29390800
17.

A scalable approach to the computation of invariant measures for high-dimensional Markovian systems.

Gerber S, Olsson S, Noé F, Horenko I.

Sci Rep. 2018 Jan 29;8(1):1796. doi: 10.1038/s41598-018-19863-4.

18.

VAMPnets for deep learning of molecular kinetics.

Mardt A, Pasquali L, Wu H, Noé F.

Nat Commun. 2018 Jan 2;9(1):5. doi: 10.1038/s41467-017-02388-1. Erratum in: Nat Commun. 2018 Oct 22;9(1):4443.

19.

An efficient multi-scale Green's function reaction dynamics scheme.

Sbailò L, Noé F.

J Chem Phys. 2017 Nov 14;147(18):184106. doi: 10.1063/1.5010190.

PMID:
29141429
20.

Protein-peptide association kinetics beyond the seconds timescale from atomistic simulations.

Paul F, Wehmeyer C, Abualrous ET, Wu H, Crabtree MD, Schöneberg J, Clarke J, Freund C, Weikl TR, Noé F.

Nat Commun. 2017 Oct 23;8(1):1095. doi: 10.1038/s41467-017-01163-6. Erratum in: Nat Commun. 2018 Mar 9;9(1):1073.

21.

Complete protein-protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling.

Plattner N, Doerr S, De Fabritiis G, Noé F.

Nat Chem. 2017 Oct;9(10):1005-1011. doi: 10.1038/nchem.2785. Epub 2017 Jun 5.

PMID:
28937668
22.

Combining experimental and simulation data of molecular processes via augmented Markov models.

Olsson S, Wu H, Paul F, Clementi C, Noé F.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8265-8270. doi: 10.1073/pnas.1704803114. Epub 2017 Jul 17.

23.

Ongoing Electroencephalographic Activity Associated with Cortical Arousal in Transgenic PDAPP Mice (hAPP V717F).

Del Percio C, Drinkenburg W, Lopez S, Limatola C, Bastlund JF, Christensen DZ, Pedersen JT, Forloni G, Frasca A, Noe FM, Bentivoglio M, Fabene PF, Bertini G, Colavito V, Dix S, Ferri R, Bordet R, Richardson JC, Babiloni C.

Curr Alzheimer Res. 2018;15(3):259-272. doi: 10.2174/1567205014666170704113405.

PMID:
28675996
24.

Effects of training programs based on ipsilateral voluntary and stimulated contractions on muscle strength and monopedal postural control of the contralateral limb.

Kadri MA, Noé F, Nouar MB, Paillard T.

Eur J Appl Physiol. 2017 Sep;117(9):1799-1806. doi: 10.1007/s00421-017-3676-z. Epub 2017 Jul 3.

PMID:
28674922
25.

Lipid-mediated PX-BAR domain recruitment couples local membrane constriction to endocytic vesicle fission.

Schöneberg J, Lehmann M, Ullrich A, Posor Y, Lo WT, Lichtner G, Schmoranzer J, Haucke V, Noé F.

Nat Commun. 2017 Jun 19;8:15873. doi: 10.1038/ncomms15873.

26.

Physical activity limits the effects of age and Alzheimer's disease on postural control.

Debove L, Bru N, Couderc M, Noé F, Paillard T.

Neurophysiol Clin. 2017 Sep;47(4):301-304. doi: 10.1016/j.neucli.2017.03.005. Epub 2017 May 4.

PMID:
28479259
27.

The Isomeric Preference of an Atypical Dopamine Transporter Inhibitor Contributes to Its Selection of the Transporter Conformation.

Abramyan AM, Stolzenberg S, Li Z, Loland CJ, Noé F, Shi L.

ACS Chem Neurosci. 2017 Aug 16;8(8):1735-1746. doi: 10.1021/acschemneuro.7b00094. Epub 2017 May 4.

PMID:
28441487
28.

Variational Koopman models: Slow collective variables and molecular kinetics from short off-equilibrium simulations.

Wu H, Nüske F, Paul F, Klus S, Koltai P, Noé F.

J Chem Phys. 2017 Apr 21;146(15):154104. doi: 10.1063/1.4979344.

PMID:
28433026
29.

Inter-joint coordination of posture on a seesaw device.

Noé F, García-Massó X, Paillard T.

J Electromyogr Kinesiol. 2017 Jun;34:72-79. doi: 10.1016/j.jelekin.2017.04.003. Epub 2017 Apr 8.

PMID:
28411488
30.

Fatigue does not conjointly alter postural and cognitive performance when standing in a shooting position under dual-task conditions.

Bermejo JL, García-Massó X, Paillard T, Noé F.

J Sports Sci. 2018 Feb;36(4):429-435. doi: 10.1080/02640414.2017.1313443. Epub 2017 Apr 3.

PMID:
28368719
31.

Major Histocompatibility Complex (MHC) Class I and MHC Class II Proteins: Conformational Plasticity in Antigen Presentation.

Wieczorek M, Abualrous ET, Sticht J, Álvaro-Benito M, Stolzenberg S, Noé F, Freund C.

Front Immunol. 2017 Mar 17;8:292. doi: 10.3389/fimmu.2017.00292. eCollection 2017. Review.

32.

Collective variables for the study of long-time kinetics from molecular trajectories: theory and methods.

Noé F, Clementi C.

Curr Opin Struct Biol. 2017 Apr;43:141-147. doi: 10.1016/j.sbi.2017.02.006. Epub 2017 Mar 17. Review.

PMID:
28327454
33.

Predicting the Kinetics of RNA Oligonucleotides Using Markov State Models.

Pinamonti G, Zhao J, Condon DE, Paul F, Noè F, Turner DH, Bussi G.

J Chem Theory Comput. 2017 Feb 14;13(2):926-934. doi: 10.1021/acs.jctc.6b00982. Epub 2017 Jan 5.

34.

Mechanistic Models of Chemical Exchange Induced Relaxation in Protein NMR.

Olsson S, Noé F.

J Am Chem Soc. 2017 Jan 11;139(1):200-210. doi: 10.1021/jacs.6b09460. Epub 2016 Dec 27.

PMID:
27958728
35.

OR2M3: A Highly Specific and Narrowly Tuned Human Odorant Receptor for the Sensitive Detection of Onion Key Food Odorant 3-Mercapto-2-methylpentan-1-ol.

Noe F, Polster J, Geithe C, Kotthoff M, Schieberle P, Krautwurst D.

Chem Senses. 2017 Mar 1;42(3):195-210. doi: 10.1093/chemse/bjw118.

PMID:
27916748
36.

The Broadly Tuned Odorant Receptor OR1A1 is Highly Selective for 3-Methyl-2,4-nonanedione, a Key Food Odorant in Aged Wines, Tea, and Other Foods.

Geithe C, Noe F, Kreissl J, Krautwurst D.

Chem Senses. 2017 Mar 1;42(3):181-193. doi: 10.1093/chemse/bjw117.

PMID:
27916747
37.

MHC class II complexes sample intermediate states along the peptide exchange pathway.

Wieczorek M, Sticht J, Stolzenberg S, Günther S, Wehmeyer C, El Habre Z, Álvaro-Benito M, Noé F, Freund C.

Nat Commun. 2016 Nov 9;7:13224. doi: 10.1038/ncomms13224.

38.

Hierarchical Time-Lagged Independent Component Analysis: Computing Slow Modes and Reaction Coordinates for Large Molecular Systems.

Pérez-Hernández G, Noé F.

J Chem Theory Comput. 2016 Dec 13;12(12):6118-6129. Epub 2016 Nov 22.

PMID:
27792332
39.

On-going electroencephalographic rhythms related to cortical arousal in wild-type mice: the effect of aging.

Del Percio C, Drinkenburg W, Lopez S, Infarinato F, Bastlund JF, Laursen B, Pedersen JT, Christensen DZ, Forloni G, Frasca A, Noè FM, Bentivoglio M, Fabene PF, Bertini G, Colavito V, Kelley J, Dix S, Richardson JC, Babiloni C; PharmaCog Consortium.

Neurobiol Aging. 2017 Jan;49:20-30. doi: 10.1016/j.neurobiolaging.2016.09.004. Epub 2016 Sep 15.

PMID:
27728831
40.

Nanoscopic compartmentalization of membrane protein motion at the axon initial segment.

Albrecht D, Winterflood CM, Sadeghi M, Tschager T, Noé F, Ewers H.

J Cell Biol. 2016 Oct 10;215(1):37-46. Epub 2016 Oct 3.

41.

Commute Maps: Separating Slowly Mixing Molecular Configurations for Kinetic Modeling.

Noé F, Banisch R, Clementi C.

J Chem Theory Comput. 2016 Nov 8;12(11):5620-5630. Epub 2016 Oct 24.

PMID:
27696838
42.

On-resin N-terminal peptoid degradation: Toward mild sequencing conditions.

Proulx C, Noë F, Yoo S, Connolly MD, Zuckermann RN.

Biopolymers. 2016 Sep;106(5):726-36. doi: 10.1002/bip.22884.

PMID:
27258140
43.

Multiensemble Markov models of molecular thermodynamics and kinetics.

Wu H, Paul F, Wehmeyer C, Noé F.

Proc Natl Acad Sci U S A. 2016 Jun 7;113(23):E3221-30. doi: 10.1073/pnas.1525092113. Epub 2016 May 25. Erratum in: Proc Natl Acad Sci U S A. 2017 Jul 24;:.

44.

Kainic acid-induced albumin leak across the blood-brain barrier facilitates epileptiform hyperexcitability in limbic regions.

Noé FM, Bellistri E, Colciaghi F, Cipelletti B, Battaglia G, de Curtis M, Librizzi L.

Epilepsia. 2016 Jun;57(6):967-76. doi: 10.1111/epi.13394. Epub 2016 May 13.

45.

Molecular dynamics simulations data of the twenty encoded amino acids in different force fields.

Vitalini F, Noé F, Keller BG.

Data Brief. 2016 Mar 9;7:582-90. doi: 10.1016/j.dib.2016.02.086. eCollection 2016 Jun.

46.

HTMD: High-Throughput Molecular Dynamics for Molecular Discovery.

Doerr S, Harvey MJ, Noé F, De Fabritiis G.

J Chem Theory Comput. 2016 Apr 12;12(4):1845-52. doi: 10.1021/acs.jctc.6b00049. Epub 2016 Mar 16.

PMID:
26949976
47.

Variational tensor approach for approximating the rare-event kinetics of macromolecular systems.

Nüske F, Schneider R, Vitalini F, Noé F.

J Chem Phys. 2016 Feb 7;144(5):054105. doi: 10.1063/1.4940774.

PMID:
26851906
48.

The impact of time of day on the gait and balance control of Alzheimer's patients.

Paillard T, Noé F, Bru N, Couderc M, Debove L.

Chronobiol Int. 2016;33(2):161-8. doi: 10.3109/07420528.2015.1124885. Epub 2016 Jan 19.

PMID:
26785632
49.

Techniques and Methods for Testing the Postural Function in Healthy and Pathological Subjects.

Paillard T, Noé F.

Biomed Res Int. 2015;2015:891390. doi: 10.1155/2015/891390. Epub 2015 Nov 12. Review.

50.

Rehabilitation and Improvement of the Postural Function.

Paillard T, Pau M, Noé F, González LM.

Biomed Res Int. 2015;2015:703679. doi: 10.1155/2015/703679. Epub 2015 Nov 12. No abstract available.

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