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Items: 17

1.

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history.

Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, Nizhynska V, Kramer EM, Lysak MA, Hodges SA, Nordborg M.

Elife. 2018 Oct 16;7. pii: e36426. doi: 10.7554/eLife.36426.

2.

Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples.

Pisupati R, Reichardt I, Seren Ü, Korte P, Nizhynska V, Kerdaffrec E, Uzunova K, Rabanal FA, Filiault DL, Nordborg M.

Sci Data. 2017 Dec 19;4:170184. doi: 10.1038/sdata.2017.184.

3.

Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana.

Rabanal FA, Mandáková T, Soto-Jiménez LM, Greenhalgh R, Parrott DL, Lutzmayer S, Steffen JG, Nizhynska V, Mott R, Lysak MA, Clark RM, Nordborg M.

Genome Biol. 2017 May 3;18(1):75. doi: 10.1186/s13059-017-1209-z.

4.

Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana.

Rabanal FA, Nizhynska V, Mandáková T, Novikova PY, Lysak MA, Mott R, Nordborg M.

G3 (Bethesda). 2017 Apr 3;7(4):1201-1209. doi: 10.1534/g3.117.040204.

5.

Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica.

Novikova PY, Tsuchimatsu T, Simon S, Nizhynska V, Voronin V, Burns R, Fedorenko OM, Holm S, Säll T, Prat E, Marande W, Castric V, Nordborg M.

Mol Biol Evol. 2017 Apr 1;34(4):957-968. doi: 10.1093/molbev/msw299.

6.

Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis.

Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M.

Elife. 2016 Dec 14;5. pii: e22502. doi: 10.7554/eLife.22502.

7.

Germline replications and somatic mutation accumulation are independent of vegetative life span in Arabidopsis.

Watson JM, Platzer A, Kazda A, Akimcheva S, Valuchova S, Nizhynska V, Nordborg M, Riha K.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12226-12231. Epub 2016 Oct 11.

8.

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, Sese J, Shimizu KK, Weigel D, Krämer U, Koch MA, Nordborg M.

Nat Genet. 2016 Sep;48(9):1077-82. doi: 10.1038/ng.3617. Epub 2016 Jul 18.

9.

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden.

Long Q, Rabanal FA, Meng D, Huber CD, Farlow A, Platzer A, Zhang Q, Vilhjálmsson BJ, Korte A, Nizhynska V, Voronin V, Korte P, Sedman L, Mandáková T, Lysak MA, Seren Ü, Hellmann I, Nordborg M.

Nat Genet. 2013 Aug;45(8):884-890. doi: 10.1038/ng.2678. Epub 2013 Jun 23.

10.

TE-Locate: A Tool to Locate and Group Transposable Element Occurrences Using Paired-End Next-Generation Sequencing Data.

Platzer A, Nizhynska V, Long Q.

Biology (Basel). 2012 Sep 12;1(2):395-410. doi: 10.3390/biology1020395.

11.

GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis.

Böhmdorfer G, Schleiffer A, Brunmeir R, Ferscha S, Nizhynska V, Kozák J, Angelis KJ, Kreil DP, Schweizer D.

Plant J. 2011 Aug;67(3):420-33. doi: 10.1111/j.1365-313X.2011.04604.x. Epub 2011 May 20.

12.

PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing.

Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M.

PLoS One. 2011 Jan 5;6(1):e15292. doi: 10.1371/journal.pone.0015292.

13.
14.

Expression of the ubiquitin variant ubR48 decreases proteolytic activity in Arabidopsis and induces cell death.

Schlögelhofer P, Garzón M, Kerzendorfer C, Nizhynska V, Bachmair A.

Planta. 2006 Mar;223(4):684-97. Epub 2005 Oct 1.

PMID:
16200408
15.

Unorthodox mRNA start site to extend the highly structured leader of retrotransposon Tto1 mRNA increases transposition rate.

Böhmdorfer G, Hofacker IL, Garber K, Jelenic S, Nizhynska V, Hirochika H, Stadler PF, Bachmair A.

RNA. 2005 Aug;11(8):1181-91.

16.

PRT1 of Arabidopsis is a ubiquitin protein ligase of the plant N-end rule pathway with specificity for aromatic amino-terminal residues.

Stary S, Yin XJ, Potuschak T, Schlögelhofer P, Nizhynska V, Bachmair A.

Plant Physiol. 2003 Nov;133(3):1360-6. Epub 2003 Oct 9.

17.

The upstream Sal repeat-containing segment of Arabidopsis thaliana ribosomal DNA intergenic region (IGR) enhances the activity of adjacent protein-coding genes.

Schlögelhofer P, Nizhynska V, Feik N, Chambon C, Potuschak T, Wanzenböck EM, Schweizer D, Bachmair A.

Plant Mol Biol. 2002 Aug;49(6):655-67.

PMID:
12081373

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