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Items: 34

1.

Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks.

Schäpe P, Kwon MJ, Baumann B, Gutschmann B, Jung S, Lenz S, Nitsche B, Paege N, Schütze T, Cairns TC, Meyer V.

Nucleic Acids Res. 2019 Jan 25;47(2):559-569. doi: 10.1093/nar/gky1183.

2.

Improving Hepatitis C Identification: Technology Alone Is Not the Answer.

Nitsche B, Miller SC, Giorgio M, Berry CA, Muir A.

Health Promot Pract. 2018 Jul;19(4):506-512. doi: 10.1177/1524839917725501. Epub 2017 Sep 11.

PMID:
28893101
3.

The low affinity glucose transporter HxtB is also involved in glucose signalling and metabolism in Aspergillus nidulans.

Dos Reis TF, Nitsche BM, de Lima PB, de Assis LJ, Mellado L, Harris SD, Meyer V, Dos Santos RA, Riaño-Pachón DM, Ries LN, Goldman GH.

Sci Rep. 2017 Mar 31;7:45073. doi: 10.1038/srep45073.

4.

A Transcriptome Meta-Analysis Proposes Novel Biological Roles for the Antifungal Protein AnAFP in Aspergillus niger.

Paege N, Jung S, Schäpe P, Müller-Hagen D, Ouedraogo JP, Heiderich C, Jedamzick J, Nitsche BM, van den Hondel CA, Ram AF, Meyer V.

PLoS One. 2016 Nov 11;11(11):e0165755. doi: 10.1371/journal.pone.0165755. eCollection 2016.

5.

Transcriptomic and molecular genetic analysis of the cell wall salvage response of Aspergillus niger to the absence of galactofuranose synthesis.

Park J, Hulsman M, Arentshorst M, Breeman M, Alazi E, Lagendijk EL, Rocha MC, Malavazi I, Nitsche BM, van den Hondel CA, Meyer V, Ram AF.

Cell Microbiol. 2016 Sep;18(9):1268-84. doi: 10.1111/cmi.12624. Epub 2016 Jul 29.

6.

An inducible tool for random mutagenesis in Aspergillus niger based on the transposon Vader.

Paun L, Nitsche B, Homan T, Ram AF, Kempken F.

Appl Microbiol Biotechnol. 2016 Jul;100(14):6309-17. doi: 10.1007/s00253-016-7438-3. Epub 2016 Mar 22.

PMID:
27003267
7.

Left ventricular wall motion analysis to guide management of CRT non-responders.

Nitsche B, Eitel C, Bode K, Wetzel U, Richter S, Döring M, Hindricks G, Piorkowski C, Gaspar T.

Europace. 2015 May;17(5):778-86. doi: 10.1093/europace/euv034. Epub 2015 Mar 29.

PMID:
25825461
8.

Systems approaches to predict the functions of glycoside hydrolases during the life cycle of Aspergillus niger using developmental mutants ∆brlA and ∆flbA.

van Munster JM, Nitsche BM, Akeroyd M, Dijkhuizen L, van der Maarel MJ, Ram AF.

PLoS One. 2015 Jan 28;10(1):e0116269. doi: 10.1371/journal.pone.0116269. eCollection 2015.

9.

The Cell Factory Aspergillus Enters the Big Data Era: Opportunities and Challenges for Optimising Product Formation.

Meyer V, Fiedler M, Nitsche B, King R.

Adv Biochem Eng Biotechnol. 2015;149:91-132. doi: 10.1007/10_2014_297. Review.

PMID:
25616499
10.

The capacity of Aspergillus niger to sense and respond to cell wall stress requires at least three transcription factors: RlmA, MsnA and CrzA.

Fiedler MR, Lorenz A, Nitsche BM, van den Hondel CA, Ram AF, Meyer V.

Fungal Biol Biotechnol. 2014 Dec 1;1:5. doi: 10.1186/s40694-014-0005-8. eCollection 2014.

11.

The transcriptional repressor TupA in Aspergillus niger is involved in controlling gene expression related to cell wall biosynthesis, development, and nitrogen source availability.

Schachtschabel D, Arentshorst M, Nitsche BM, Morris S, Nielsen KF, van den Hondel CA, Klis FM, Ram AF.

PLoS One. 2013 Oct 29;8(10):e78102. doi: 10.1371/journal.pone.0078102. eCollection 2013.

12.

The transcriptomic signature of RacA activation and inactivation provides new insights into the morphogenetic network of Aspergillus niger.

Kwon MJ, Nitsche BM, Arentshorst M, Jørgensen TR, Ram AF, Meyer V.

PLoS One. 2013 Jul 24;8(7):e68946. doi: 10.1371/journal.pone.0068946. Print 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/ffb09608-0f66-4985-97a9-3da9d498b3bf.

13.

Chitinases CtcB and CfcI modify the cell wall in sporulating aerial mycelium of Aspergillus niger.

van Munster JM, Nitsche BM, Krijgsheld P, van Wijk A, Dijkhuizen L, Wösten HA, Ram AF, van der Maarel MJ.

Microbiology. 2013 Sep;159(Pt 9):1853-67. doi: 10.1099/mic.0.067967-0. Epub 2013 Jul 7.

PMID:
23832003
14.

Autophagy promotes survival in aging submerged cultures of the filamentous fungus Aspergillus niger.

Nitsche BM, Burggraaf-van Welzen AM, Lamers G, Meyer V, Ram AF.

Appl Microbiol Biotechnol. 2013 Sep;97(18):8205-18. doi: 10.1007/s00253-013-4971-1. Epub 2013 May 23.

PMID:
23700238
15.

Deletion of flbA results in increased secretome complexity and reduced secretion heterogeneity in colonies of Aspergillus niger.

Krijgsheld P, Nitsche BM, Post H, Levin AM, Müller WH, Heck AJ, Ram AF, Altelaar AF, Wösten HA.

J Proteome Res. 2013 Apr 5;12(4):1808-19. doi: 10.1021/pr301154w. Epub 2013 Mar 22.

PMID:
23461488
16.

Individually tailored left ventricular lead placement: lessons from multimodality integration between three-dimensional echocardiography and coronary sinus angiogram.

Döring M, Braunschweig F, Eitel C, Gaspar T, Wetzel U, Nitsche B, Hindricks G, Piorkowski C.

Europace. 2013 May;15(5):718-27. doi: 10.1093/europace/eus396. Epub 2013 Feb 6.

PMID:
23388184
17.

The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger.

Kwon MJ, Jørgensen TR, Nitsche BM, Arentshorst M, Park J, Ram AF, Meyer V.

BMC Genomics. 2012 Dec 13;13:701. doi: 10.1186/1471-2164-13-701.

18.

The carbon starvation response of Aspergillus niger during submerged cultivation: insights from the transcriptome and secretome.

Nitsche BM, Jørgensen TR, Akeroyd M, Meyer V, Ram AF.

BMC Genomics. 2012 Aug 8;13:380. doi: 10.1186/1471-2164-13-380.

19.

Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress.

Carvalho ND, Jørgensen TR, Arentshorst M, Nitsche BM, van den Hondel CA, Archer DB, Ram AF.

BMC Genomics. 2012 Jul 30;13:350. doi: 10.1186/1471-2164-13-350.

20.

The use of open source bioinformatics tools to dissect transcriptomic data.

Nitsche BM, Ram AF, Meyer V.

Methods Mol Biol. 2012;835:311-31. doi: 10.1007/978-1-61779-501-5_19.

PMID:
22183662
21.

New resources for functional analysis of omics data for the genus Aspergillus.

Nitsche BM, Crabtree J, Cerqueira GC, Meyer V, Ram AF, Wortman JR.

BMC Genomics. 2011 Oct 5;12:486. doi: 10.1186/1471-2164-12-486.

22.

Expression of ADAMTS1 in endothelial cells is induced by shear stress and suppressed in sprouting capillaries.

Hohberg M, Knöchel J, Hoffmann CJ, Chlench S, Wunderlich W, Alter A, Maroski J, Vorderwülbecke BJ, Da Silva-Azevedo L, Knudsen R, Lehmann R, Fiedorowicz K, Bongrazio M, Nitsche B, Hoepfner M, Styp-Rekowska B, Pries AR, Zakrzewicz A.

J Cell Physiol. 2011 Feb;226(2):350-61. doi: 10.1002/jcp.22340.

PMID:
20665671
23.

Transcriptomic insights into the physiology of Aspergillus niger approaching a specific growth rate of zero.

Jørgensen TR, Nitsche BM, Lamers GE, Arentshorst M, van den Hondel CA, Ram AF.

Appl Environ Microbiol. 2010 Aug;76(16):5344-55. doi: 10.1128/AEM.00450-10. Epub 2010 Jun 18.

24.

Reconstruction of signaling networks regulating fungal morphogenesis by transcriptomics.

Meyer V, Arentshorst M, Flitter SJ, Nitsche BM, Kwon MJ, Reynaga-Peña CG, Bartnicki-Garcia S, van den Hondel CA, Ram AF.

Eukaryot Cell. 2009 Nov;8(11):1677-91. doi: 10.1128/EC.00050-09. Epub 2009 Sep 11.

25.

The tyrosine kinase inhibitor imatinib fails to inhibit pancreatic cancer progression.

Chen J, Röcken C, Nitsche B, Hosius C, Gschaidmeier H, Kahl S, Malfertheiner P, Ebert MP.

Cancer Lett. 2006 Feb 28;233(2):328-37.

PMID:
15893416
26.

Implications of growth factor alterations in the treatment of pancreatic cancer.

Juhász M, Nitsche B, Malfertheiner P, Ebert MP.

Mol Cancer. 2003 Jan 7;2:5. Review.

27.

Rocuronium potency and recovery characteristics during steady-state desflurane, sevoflurane, isoflurane or propofol anaesthesia.

Bock M, Klippel K, Nitsche B, Bach A, Martin E, Motsch J.

Br J Anaesth. 2000 Jan;84(1):43-7.

28.

Assessment of autonomic dysreflexia in patients with spinal cord injury.

Curt A, Nitsche B, Rodic B, Schurch B, Dietz V.

J Neurol Neurosurg Psychiatry. 1997 May;62(5):473-7.

29.

[Social integration of patients of a long-term institution].

Mönking HS, Nitsche B.

Psychiatr Prax. 1997 Jan;24(1):32-6. German.

PMID:
9132779
30.

Loss of circadian blood pressure variability in complete tetraplegia.

Nitsche B, Perschak H, Curt A, Dietz V.

J Hum Hypertens. 1996 May;10(5):311-7.

PMID:
8817405
31.

Incidence and morphology of spontaneous thyroid tumours in different strains of rats.

Kaspareit-Rittinghausen J, Wiese K, Deerberg F, Nitsche B.

J Comp Pathol. 1990 May;102(4):421-32.

PMID:
2365854
32.

Rhizopus oligosporus as a cause of mucormycosis in man.

Tintelnot K, Nitsche B.

Mycoses. 1989 Mar;32(3):115-8.

PMID:
2733723
33.

Naturally-occurring neoplasms of the preputial and clitoral gland in Han:SPRD rats.

Kaspareit-Rittinghausen J, Deerberg F, Nitsche B.

Zentralbl Veterinarmed A. 1988 Sep;35(8):596-603. No abstract available.

PMID:
3142184
34.

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